Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

15915766 .. 15916816

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG155700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGACGATGCTGGTTTGCGAACGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTAGGAATGCTAGTGCTGAGGCTCTACTACTTGGTTCTCATTTGGATACTGTTGTTGAGGCCAGGATATTTGATGGTGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTGTAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATAGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGATTCAAAATCAGTTTGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTTGGAGTTGTTAAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

135

Amino Acids

14.86

Weight (kDa)

5.11

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	2 cut(s)	48, 365
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	251, 318, 352
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	194, 304
AluI	AGCT	2 cut(s)	194, 304
Alw21I	GWGCWC	1 cut(s)	294
AoxI	GGCC	2 cut(s)	123, 358
ApeKI	GCWGC	3 cut(s)	185, 298, 301
ApoI	RAATTY	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	152
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	172, 310, 313
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	3 cut(s)	186, 299, 302
BlsI	GCNGC	3 cut(s)	187, 300, 303
Bme1390I	CCNGG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	206, 371
BseBI	CCWGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	72, 319
BseNI	ACTGG	2 cut(s)	206, 371
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	172, 310, 313
BshFI	GGCC	2 cut(s)	125, 360
BsiHKAI	GWGCWC	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	125, 360
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	46
BspANI	GGCC	2 cut(s)	125, 360
BspCNI	CTCAG	2 cut(s)	73, 318
BspTI	CTTAAG	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	206, 371
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	115
BstAFI	CTTAAG	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	81, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 298
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	172, 310, 313
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	125, 360
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	47, 364
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	5 cut(s)	86, 125, 194, 304, 360
CviKI_1	RGCY	5 cut(s)	86, 125, 194, 304, 360
CviQI	GTAC	2 cut(s)	47, 364
DdeI	CTNAG	2 cut(s)	81, 305
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	53
FaiI	YATR	6 cut(s)	51, 176, 275, 312, 335, 406
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	186, 299, 302
Fsp4HI	GCNGC	3 cut(s)	186, 299, 302
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	3 cut(s)	186, 299, 302
HaeIII	GGCC	2 cut(s)	125, 360
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	2 cut(s)	314, 342
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	220, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 298
HpyF3I	CTNAG	2 cut(s)	81, 305
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	53
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	6 cut(s)	112, 139, 180, 219, 352, 374
Lsp1109I	GCAGC	3 cut(s)	172, 310, 313
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	241, 280
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	2 cut(s)	198, 246
MnlI	CCTC	5 cut(s)	55, 76, 115, 280, 395
MseI	TTAA	2 cut(s)	261, 398
MspCI	CTTAAG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	191, 298
NlaIII	CATG	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	241
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	314, 342
PkrI	GCNGC	3 cut(s)	187, 300, 303
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	358
RsaI	GTAC	2 cut(s)	48, 365
RsaNI	GTAC	2 cut(s)	47, 364
SaqAI	TTAA	2 cut(s)	261, 398
SatI	GCNGC	3 cut(s)	186, 299, 302
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	4 cut(s)	26, 161, 196, 306
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	198, 246
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	198, 246
TatI	WGTACW	2 cut(s)	46, 363
TfiI	GAWTC	2 cut(s)	314, 342
Tru1I	TTAA	2 cut(s)	261, 398
Tru9I	TTAA	2 cut(s)	261, 398
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	185, 298, 301
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	159, 163
TspRI	CASTG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	260
XapI	RAATTY	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.