alpha-amylase 3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ig_N_CWD1 | PF23166 | 87 - 209 | 1.6e-29 | Alpha-glucan water dikinase 1 Ig-like N-terminal domain |
| Ig_N_CWD1 | PF23166 | 276 - 393 | 2.9e-34 | Alpha-glucan water dikinase 1 Ig-like N-terminal domain |
| Alpha-amylase | PF00128 | 536 - 603 | 9.7e-13 | Alpha amylase, catalytic domain |
| Alpha-amyl_C2 | PF07821 | 840 - 896 | 6e-17 | Alpha-amylase C-terminal beta-sheet domain |
| Pec_lyase_N | PF04431 | 964 - 1011 | 6.8e-13 | Pectate lyase, N terminus |
| Pectate_lyase_4 | PF00544 | 1106 - 1308 | 2.4e-18 | Pectate lyase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2549 |
| AarI | CACCTGC | 2 cut(s) | 1207, 2455 |
| AatII | GACGTC | 1 cut(s) | 387 |
| Acc16I | TGCGCA | 1 cut(s) | 1803 |
| Acc36I | ACCTGC | 4 cut(s) | 645, 1207, 2455, 2486 |
| AccB1I | GGYRCC | 2 cut(s) | 60, 3762 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3549 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AccII | CGCG | 4 cut(s) | 218, 3249, 3254, 3719 |
| AclI | AACGTT | 3 cut(s) | 1944, 3366, 4011 |
| AclWI | GGATC | 9 cut(s) | 408, 1224, 1877, 2157, 3253, 3287, 3492, 3560, 3948 |
| AcoI | YGGCCR | 2 cut(s) | 133, 2324 |
| AcsI | RAATTY | 4 cut(s) | 556, 850, 978, 2406 |
| AcuI | CTGAAG | 8 cut(s) | 1245, 1411, 1431, 1494, 1686, 1748, 2798, 3383 |
| AcvI | CACGTG | 1 cut(s) | 3784 |
| AcyI | GRCGYC | 1 cut(s) | 384 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 629, 2639, 2640, 3109, 3236, 3253, 3549, 3573, 3655 |
| AflII | CTTAAG | 1 cut(s) | 2125 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3448 |
| AhlI | ACTAGT | 1 cut(s) | 2201 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 704, 736, 2170, 2202, 3623, 3655 |
| AleI | CACNNNNGTG | 1 cut(s) | 1797 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1767, 1799 |
| Alw21I | GWGCWC | 1 cut(s) | 1587 |
| Alw26I | GTCTC | 6 cut(s) | 227, 801, 878, 2670, 3468, 3957 |
| AlwI | GGATC | 9 cut(s) | 408, 1224, 1877, 2157, 3253, 3287, 3492, 3560, 3948 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 860, 1472, 1655, 3477 |
| Ama87I | CYCGRG | 1 cut(s) | 4052 |
| AoxI | GGCC | 9 cut(s) | 133, 422, 2324, 2642, 2766, 3066, 3111, 3182, 4062 |
| ApaI | GGGCCC | 1 cut(s) | 3186 |
| ApoI | RAATTY | 4 cut(s) | 556, 850, 978, 2406 |
| AseI | ATTAAT | 1 cut(s) | 2193 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1380, 1745, 2943 |
| AspLEI | GCGC | 5 cut(s) | 220, 1187, 1804, 3539, 4091 |
| AsuC2I | CCSGG | 6 cut(s) | 47, 58, 342, 4000, 4053, 4054 |
| AsuNHI | GCTAGC | 1 cut(s) | 2084 |
| AvaI | CYCGRG | 1 cut(s) | 4052 |
| AvaII | GGWCC | 7 cut(s) | 1314, 2615, 2655, 3056, 3269, 3501, 4003 |
| AxyI | CCTNAGG | 1 cut(s) | 1504 |
| BaeGI | GKGCMC | 2 cut(s) | 881, 3186 |
| BalI | TGGCCA | 1 cut(s) | 2326 |
| BanI | GGYRCC | 2 cut(s) | 60, 3762 |
| BanII | GRGCYC | 2 cut(s) | 1587, 3186 |
| BauI | CACGAG | 2 cut(s) | 2331, 2993 |
| BbrPI | CACGTG | 1 cut(s) | 3784 |
| BbsI | GAAGAC | 2 cut(s) | 2446, 2824 |
| Bbv12I | GWGCWC | 1 cut(s) | 1587 |
| BbvCI | CCTCAGC | 1 cut(s) | 89 |
| BceAI | ACGGC | 2 cut(s) | 185, 4027 |
| BclI | TGATCA | 3 cut(s) | 925, 1948, 3468 |
| BcnI | CCSGG | 6 cut(s) | 47, 58, 342, 4000, 4053, 4054 |
| BcoDI | GTCTC | 6 cut(s) | 227, 801, 878, 2670, 3468, 3957 |
| BcuI | ACTAGT | 1 cut(s) | 2201 |
| BfaI | CTAG | 9 cut(s) | 792, 800, 1616, 2085, 2202, 2735, 4077, 4094, 4120 |
| BfmI | CTRYAG | 7 cut(s) | 843, 1043, 1203, 1417, 1647, 2448, 2479 |
| BfoI | RGCGCY | 2 cut(s) | 3540, 4092 |
| BfrI | CTTAAG | 1 cut(s) | 2125 |
| BfuAI | ACCTGC | 4 cut(s) | 645, 1207, 2455, 2486 |
| BglII | AGATCT | 3 cut(s) | 273, 2483, 2737 |
| BmcAI | AGTACT | 2 cut(s) | 1770, 2897 |
| Bme18I | GGWCC | 7 cut(s) | 1314, 2615, 2655, 3056, 3269, 3501, 4003 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3448 |
| BmeT110I | CYCGRG | 1 cut(s) | 4052 |
| BmrI | ACTGGG | 1 cut(s) | 370 |
| BmtI | GCTAGC | 1 cut(s) | 2088 |
| BmuI | ACTGGG | 1 cut(s) | 370 |
| BpiI | GAAGAC | 2 cut(s) | 2446, 2824 |
| BpmI | CTGGAG | 2 cut(s) | 1687, 2404 |
| Bpu10I | CCTNAGC | 2 cut(s) | 89, 2000 |
| BpuEI | CTTGAG | 3 cut(s) | 266, 2687, 3675 |
| BpuMI | CCSGG | 6 cut(s) | 47, 58, 342, 4000, 4053, 4054 |
| Bsa29I | ATCGAT | 1 cut(s) | 3348 |
| BsaAI | YACGTR | 1 cut(s) | 3784 |
| BsaBI | GATNNNNATC | 2 cut(s) | 528, 2154 |
| BsaHI | GRCGYC | 1 cut(s) | 384 |
| BsaI | GGTCTC | 1 cut(s) | 801 |
| BsaWI | WCCGGW | 1 cut(s) | 2517 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 77, 107, 1767, 1797, 3351, 3381 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 629, 2639, 2640, 3109, 3236, 3253, 3549, 3573, 3655 |
| Bse118I | RCCGGY | 2 cut(s) | 3167, 3458 |
| Bse1I | ACTGG | 8 cut(s) | 264, 365, 586, 2368, 2387, 2704, 2903, 3947 |
| Bse21I | CCTNAGG | 1 cut(s) | 1504 |
| Bse3DI | GCAATG | 5 cut(s) | 658, 1165, 2610, 3666, 3870 |
| Bse8I | GATNNNNATC | 2 cut(s) | 528, 2154 |
| BseCI | ATCGAT | 1 cut(s) | 3348 |
| BseJI | GATNNNNATC | 2 cut(s) | 528, 2154 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 629, 2639, 2640, 3109, 3236, 3253, 3549, 3573, 3655 |
| BseMI | GCAATG | 5 cut(s) | 658, 1165, 2610, 3666, 3870 |
| BseNI | ACTGG | 8 cut(s) | 264, 365, 586, 2368, 2387, 2704, 2903, 3947 |
| BseRI | GAGGAG | 3 cut(s) | 85, 2987, 3372 |
| BseSI | GKGCMC | 2 cut(s) | 881, 3186 |
| BsgI | GTGCAG | 4 cut(s) | 341, 1272, 1887, 1920 |
| Bsh1236I | CGCG | 4 cut(s) | 218, 3249, 3254, 3719 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3717 |
| BshFI | GGCC | 9 cut(s) | 135, 424, 2326, 2644, 2768, 3068, 3113, 3184, 4064 |
| BshNI | GGYRCC | 2 cut(s) | 60, 3762 |
| BshVI | ATCGAT | 1 cut(s) | 3348 |
| BsiEI | CGRYCG | 1 cut(s) | 3717 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1587 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4052 |
| BslFI | GGGAC | 4 cut(s) | 1522, 3042, 4016, 4069 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 629, 2639, 2640, 3109, 3236, 3253, 3549, 3573, 3655 |
| BsmAI | GTCTC | 6 cut(s) | 227, 801, 878, 2670, 3468, 3957 |
| BsmFI | GGGAC | 4 cut(s) | 1522, 3042, 4016, 4069 |
| BsmI | GAATGC | 3 cut(s) | 1380, 1745, 3759 |
| BsnI | GGCC | 9 cut(s) | 135, 424, 2326, 2644, 2768, 3068, 3113, 3184, 4064 |
| Bso31I | GGTCTC | 1 cut(s) | 801 |
| BsoBI | CYCGRG | 1 cut(s) | 4052 |
| Bsp120I | GGGCCC | 1 cut(s) | 3182 |
| Bsp1286I | GDGCHC | 3 cut(s) | 881, 1587, 3186 |
| Bsp19I | CCATGG | 1 cut(s) | 3567 |
| BspANI | GGCC | 9 cut(s) | 135, 424, 2326, 2644, 2768, 3068, 3113, 3184, 4064 |
| BspDI | ATCGAT | 1 cut(s) | 3348 |
| BspFNI | CGCG | 4 cut(s) | 218, 3249, 3254, 3719 |
| BspHI | TCATGA | 1 cut(s) | 3603 |
| BspMAI | CTGCAG | 3 cut(s) | 1047, 1207, 2452 |
| BspMI | ACCTGC | 4 cut(s) | 645, 1207, 2455, 2486 |
| BspOI | GCTAGC | 1 cut(s) | 2088 |
| BspPI | GGATC | 9 cut(s) | 408, 1224, 1877, 2157, 3253, 3287, 3492, 3560, 3948 |
| BspT107I | GGYRCC | 2 cut(s) | 60, 3762 |
| BspTI | CTTAAG | 1 cut(s) | 2125 |
| BspTNI | GGTCTC | 1 cut(s) | 801 |
| BsrDI | GCAATG | 5 cut(s) | 658, 1165, 2610, 3666, 3870 |
| BsrFI | RCCGGY | 2 cut(s) | 3167, 3458 |
| BsrI | ACTGG | 8 cut(s) | 264, 365, 586, 2368, 2387, 2704, 2903, 3947 |
| BssAI | RCCGGY | 2 cut(s) | 3167, 3458 |
| BssNI | GRCGYC | 1 cut(s) | 384 |
| BssSI | CACGAG | 2 cut(s) | 2331, 2993 |
| BssT1I | CCWWGG | 4 cut(s) | 1537, 3042, 3567, 3758 |
| Bst2BI | CACGAG | 2 cut(s) | 2331, 2993 |
| Bst6I | CTCTTC | 7 cut(s) | 30, 342, 601, 1337, 2668, 3402, 3536 |
| BstACI | GRCGYC | 1 cut(s) | 384 |
| BstAFI | CTTAAG | 1 cut(s) | 2125 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1874 |
| BstBAI | YACGTR | 1 cut(s) | 3784 |
| BstC8I | GCNNGC | 5 cut(s) | 1997, 2086, 2090, 3088, 3092 |
| BstDSI | CCRYGG | 2 cut(s) | 130, 3567 |
| BstEII | GGTNACC | 2 cut(s) | 1635, 3901 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3234 |
| BstFNI | CGCG | 4 cut(s) | 218, 3249, 3254, 3719 |
| BstH2I | RGCGCY | 2 cut(s) | 3540, 4092 |
| BstHHI | GCGC | 5 cut(s) | 220, 1187, 1804, 3539, 4091 |
| BstMAI | GTCTC | 6 cut(s) | 227, 801, 878, 2670, 3468, 3957 |
| BstMCI | CGRYCG | 1 cut(s) | 3717 |
| BstNSI | RCATGY | 2 cut(s) | 1678, 3090 |
| BstPI | GGTNACC | 2 cut(s) | 1635, 3901 |
| BstSFI | CTRYAG | 7 cut(s) | 843, 1043, 1203, 1417, 1647, 2448, 2479 |
| BstSLI | GKGCMC | 2 cut(s) | 881, 3186 |
| BstUI | CGCG | 4 cut(s) | 218, 3249, 3254, 3719 |
| BstV2I | GAAGAC | 2 cut(s) | 2446, 2824 |
| BstX2I | RGATCY | 4 cut(s) | 273, 2483, 2737, 3953 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1757 |
| BstYI | RGATCY | 4 cut(s) | 273, 2483, 2737, 3953 |
| Bsu15I | ATCGAT | 1 cut(s) | 3348 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1504 |
| BsuRI | GGCC | 9 cut(s) | 135, 424, 2326, 2644, 2768, 3068, 3113, 3184, 4064 |
| BsuTUI | ATCGAT | 1 cut(s) | 3348 |
| BtgI | CCRYGG | 2 cut(s) | 130, 3567 |
| BtgZI | GCGATG | 2 cut(s) | 3525, 3531 |
| BtsI | GCAGTG | 3 cut(s) | 162, 397, 3612 |
| BveI | ACCTGC | 4 cut(s) | 645, 1207, 2455, 2486 |
| Cac8I | GCNNGC | 5 cut(s) | 1997, 2086, 2090, 3088, 3092 |
| CaiI | CAGNNNCTG | 4 cut(s) | 860, 1472, 1655, 3477 |
| CciI | TCATGA | 1 cut(s) | 3603 |
| CfoI | GCGC | 5 cut(s) | 220, 1187, 1804, 3539, 4091 |
| Cfr10I | RCCGGY | 2 cut(s) | 3167, 3458 |
| Cfr9I | CCCGGG | 1 cut(s) | 4052 |
| ClaI | ATCGAT | 1 cut(s) | 3348 |
| CseI | GACGC | 4 cut(s) | 3092, 3130, 3260, 3605 |
| CsiI | ACCWGGT | 2 cut(s) | 427, 2617 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1897, 1932, 3442, 3477 |
| DraI | TTTAAA | 1 cut(s) | 1851 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3448 |
| EaeI | YGGCCR | 2 cut(s) | 133, 2324 |
| Eam1104I | CTCTTC | 7 cut(s) | 30, 342, 601, 1337, 2668, 3402, 3536 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3448 |
| EarI | CTCTTC | 7 cut(s) | 30, 342, 601, 1337, 2668, 3402, 3536 |
| EciI | GGCGGA | 1 cut(s) | 987 |
| Ecl136II | GAGCTC | 1 cut(s) | 1585 |
| Eco130I | CCWWGG | 4 cut(s) | 1537, 3042, 3567, 3758 |
| Eco24I | GRGCYC | 2 cut(s) | 1587, 3186 |
| Eco31I | GGTCTC | 1 cut(s) | 801 |
| Eco32I | GATATC | 1 cut(s) | 1978 |
| Eco47I | GGWCC | 7 cut(s) | 1314, 2615, 2655, 3056, 3269, 3501, 4003 |
| Eco53kI | GAGCTC | 1 cut(s) | 1585 |
| Eco57I | CTGAAG | 8 cut(s) | 1245, 1411, 1431, 1494, 1686, 1748, 2798, 3383 |
| Eco72I | CACGTG | 1 cut(s) | 3784 |
| Eco81I | CCTNAGG | 1 cut(s) | 1504 |
| Eco88I | CYCGRG | 1 cut(s) | 4052 |
| Eco91I | GGTNACC | 2 cut(s) | 1635, 3901 |
| EcoICRI | GAGCTC | 1 cut(s) | 1585 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3234 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1314, 3269, 4003 |
| EcoO65I | GGTNACC | 2 cut(s) | 1635, 3901 |
| EcoRI | GAATTC | 1 cut(s) | 850 |
| EcoRV | GATATC | 1 cut(s) | 1978 |
| EcoT14I | CCWWGG | 4 cut(s) | 1537, 3042, 3567, 3758 |
| EcoT22I | ATGCAT | 1 cut(s) | 2422 |
| EcoT38I | GRGCYC | 2 cut(s) | 1587, 3186 |
| ErhI | CCWWGG | 4 cut(s) | 1537, 3042, 3567, 3758 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 609, 641, 2229, 2261 |
| FaqI | GGGAC | 4 cut(s) | 1522, 3042, 4016, 4069 |
| FauNDI | CATATG | 1 cut(s) | 2137 |
| FbaI | TGATCA | 3 cut(s) | 925, 1948, 3468 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| FriOI | GRGCYC | 2 cut(s) | 1587, 3186 |
| FspBI | CTAG | 9 cut(s) | 792, 800, 1616, 2085, 2202, 2735, 4077, 4094, 4120 |
| FspI | TGCGCA | 1 cut(s) | 1803 |
| GlaI | GCGC | 5 cut(s) | 219, 1186, 1803, 3538, 4090 |
| GsuI | CTGGAG | 2 cut(s) | 1687, 2404 |
| HaeII | RGCGCY | 2 cut(s) | 3540, 4092 |
| HaeIII | GGCC | 9 cut(s) | 135, 424, 2326, 2644, 2768, 3068, 3113, 3184, 4064 |
| HgaI | GACGC | 4 cut(s) | 3092, 3130, 3260, 3605 |
| HhaI | GCGC | 5 cut(s) | 220, 1187, 1804, 3539, 4091 |
| Hin1I | GRCGYC | 1 cut(s) | 384 |
| Hin6I | GCGC | 5 cut(s) | 218, 1185, 1802, 3537, 4089 |
| HinP1I | GCGC | 5 cut(s) | 218, 1185, 1802, 3537, 4089 |
| HincII | GTYRAC | 2 cut(s) | 6, 2866 |
| HindII | GTYRAC | 2 cut(s) | 6, 2866 |
| Hpy166II | GTNNAC | 7 cut(s) | 6, 1083, 2866, 2992, 3226, 3790, 3918 |
| Hpy8I | GTNNAC | 7 cut(s) | 6, 1083, 2866, 2992, 3226, 3790, 3918 |
| Hpy99I | CGWCG | 8 cut(s) | 10, 389, 1684, 3086, 3254, 3584, 3587, 3599 |
| HpyCH4IV | ACGT | 9 cut(s) | 384, 1069, 1944, 2988, 3366, 3435, 3546, 3783, 4011 |
| HpySE526I | ACGT | 9 cut(s) | 384, 1069, 1944, 2988, 3366, 3435, 3546, 3783, 4011 |
| Hsp92I | GRCGYC | 1 cut(s) | 384 |
| HspAI | GCGC | 5 cut(s) | 218, 1185, 1802, 3537, 4089 |
| KflI | GGGWCCC | 1 cut(s) | 4003 |
| Ksp22I | TGATCA | 3 cut(s) | 925, 1948, 3468 |
| MabI | ACCWGGT | 2 cut(s) | 427, 2617 |
| MaeI | CTAG | 9 cut(s) | 792, 800, 1616, 2085, 2202, 2735, 4077, 4094, 4120 |
| MaeII | ACGT | 9 cut(s) | 384, 1069, 1944, 2988, 3366, 3435, 3546, 3783, 4011 |
| MfeI | CAATTG | 1 cut(s) | 543 |
| MflI | RGATCY | 4 cut(s) | 273, 2483, 2737, 3953 |
| MhlI | GDGCHC | 3 cut(s) | 881, 1587, 3186 |
| MlsI | TGGCCA | 1 cut(s) | 2326 |
| MluNI | TGGCCA | 1 cut(s) | 2326 |
| MlyI | GAGTC | 7 cut(s) | 1354, 2425, 2805, 3200, 3458, 3582, 3935 |
| MmeI | TCCRAC | 9 cut(s) | 472, 640, 735, 2238, 2296, 2516, 3567, 3654, 3909 |
| Mox20I | TGGCCA | 1 cut(s) | 2326 |
| Mph1103I | ATGCAT | 1 cut(s) | 2422 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1380, 1745, 2943 |
| MscI | TGGCCA | 1 cut(s) | 2326 |
| MseI | TTAA | 8 cut(s) | 444, 780, 1545, 1850, 2067, 2126, 2193, 3438 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1797 |
| Msp20I | TGGCCA | 1 cut(s) | 2326 |
| MspA1I | CMGCKG | 3 cut(s) | 1797, 2213, 2915 |
| MspCI | CTTAAG | 1 cut(s) | 2125 |
| MunI | CAATTG | 1 cut(s) | 543 |
| Mva1269I | GAATGC | 3 cut(s) | 1380, 1745, 3759 |
| MvnI | CGCG | 4 cut(s) | 218, 3249, 3254, 3719 |
| NciI | CCSGG | 6 cut(s) | 47, 58, 342, 4000, 4053, 4054 |
| NcoI | CCATGG | 1 cut(s) | 3567 |
| NdeI | CATATG | 1 cut(s) | 2137 |
| NheI | GCTAGC | 1 cut(s) | 2084 |
| NmeAIII | GCCGAG | 2 cut(s) | 2744, 2959 |
| NmuCI | GTSAC | 8 cut(s) | 1659, 2378, 2621, 2799, 3098, 3196, 3335, 3901 |
| NsbI | TGCGCA | 1 cut(s) | 1803 |
| NsiI | ATGCAT | 1 cut(s) | 2422 |
| NspI | RCATGY | 2 cut(s) | 1678, 3090 |
| OliI | CACNNNNGTG | 1 cut(s) | 1797 |
| PaeI | GCATGC | 1 cut(s) | 3090 |
| PagI | TCATGA | 1 cut(s) | 3603 |
| PaqCI | CACCTGC | 2 cut(s) | 1207, 2455 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 3060, 3552, 3591 |
| PctI | GAATGC | 3 cut(s) | 1380, 1745, 3759 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1380, 1745, 2943 |
| PflFI | GACNNNGTC | 1 cut(s) | 2619 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3549 |
| PfoI | TCCNGGA | 1 cut(s) | 2437 |
| PleI | GAGTC | 7 cut(s) | 1353, 2425, 2805, 3200, 3457, 3582, 3934 |
| PmaCI | CACGTG | 1 cut(s) | 3784 |
| PmlI | CACGTG | 1 cut(s) | 3784 |
| PpsI | GAGTC | 7 cut(s) | 1353, 2425, 2805, 3200, 3457, 3582, 3934 |
| Ppu21I | YACGTR | 1 cut(s) | 3784 |
| PpuMI | RGGWCCY | 3 cut(s) | 1314, 3269, 4003 |
| PshBI | ATTAAT | 1 cut(s) | 2193 |
| PsiI | TTATAA | 1 cut(s) | 2549 |
| Psp124BI | GAGCTC | 1 cut(s) | 1587 |
| Psp1406I | AACGTT | 3 cut(s) | 1944, 3366, 4011 |
| Psp5II | RGGWCCY | 3 cut(s) | 1314, 3269, 4003 |
| PspCI | CACGTG | 1 cut(s) | 3784 |
| PspEI | GGTNACC | 2 cut(s) | 1635, 3901 |
| PspOMI | GGGCCC | 1 cut(s) | 3182 |
| PspPPI | RGGWCCY | 3 cut(s) | 1314, 3269, 4003 |
| PstI | CTGCAG | 3 cut(s) | 1047, 1207, 2452 |
| PstNI | CAGNNNCTG | 4 cut(s) | 860, 1472, 1655, 3477 |
| PsuI | RGATCY | 4 cut(s) | 273, 2483, 2737, 3953 |
| PsyI | GACNNNGTC | 1 cut(s) | 2619 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1797 |
| SacI | GAGCTC | 1 cut(s) | 1587 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 8 cut(s) | 444, 780, 1545, 1850, 2067, 2126, 2193, 3438 |
| ScaI | AGTACT | 2 cut(s) | 1770, 2897 |
| SchI | GAGTC | 7 cut(s) | 1354, 2425, 2805, 3200, 3458, 3582, 3935 |
| SduI | GDGCHC | 3 cut(s) | 881, 1587, 3186 |
| SexAI | ACCWGGT | 2 cut(s) | 427, 2617 |
| SfcI | CTRYAG | 7 cut(s) | 843, 1043, 1203, 1417, 1647, 2448, 2479 |
| SinI | GGWCC | 7 cut(s) | 1314, 2615, 2655, 3056, 3269, 3501, 4003 |
| SmaI | CCCGGG | 1 cut(s) | 4054 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1797 |
| SmlI | CTYRAG | 4 cut(s) | 245, 2125, 2666, 3690 |
| SmoI | CTYRAG | 4 cut(s) | 245, 2125, 2666, 3690 |
| SpeI | ACTAGT | 1 cut(s) | 2201 |
| SphI | GCATGC | 1 cut(s) | 3090 |
| SspI | AATATT | 1 cut(s) | 1530 |
| SspMI | CTAG | 9 cut(s) | 792, 800, 1616, 2085, 2202, 2735, 4077, 4094, 4120 |
| SstI | GAGCTC | 1 cut(s) | 1587 |
| StyI | CCWWGG | 4 cut(s) | 1537, 3042, 3567, 3758 |
| TaiI | ACGT | 9 cut(s) | 387, 1072, 1947, 2991, 3369, 3438, 3549, 3786, 4014 |
| TaqI | TCGA | 8 cut(s) | 5, 1039, 1348, 3081, 3135, 3348, 3555, 3594 |
| TatI | WGTACW | 6 cut(s) | 332, 597, 1136, 1768, 2895, 3915 |
| TauI | GCSGC | 4 cut(s) | 2213, 2582, 2915, 3174 |
| Tru1I | TTAA | 8 cut(s) | 444, 780, 1545, 1850, 2067, 2126, 2193, 3438 |
| Tru9I | TTAA | 8 cut(s) | 444, 780, 1545, 1850, 2067, 2126, 2193, 3438 |
| TseFI | GTSAC | 8 cut(s) | 1659, 2378, 2621, 2799, 3098, 3196, 3335, 3901 |
| Tsp45I | GTSAC | 8 cut(s) | 1659, 2378, 2621, 2799, 3098, 3196, 3335, 3901 |
| TspGWI | ACGGA | 5 cut(s) | 119, 929, 1697, 2900, 3600 |
| TspMI | CCCGGG | 1 cut(s) | 4052 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2619 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3549 |
| Vha464I | CTTAAG | 1 cut(s) | 2125 |
| VpaK11BI | GGWCC | 7 cut(s) | 1314, 2615, 2655, 3056, 3269, 3501, 4003 |
| VspI | ATTAAT | 1 cut(s) | 2193 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3234 |
| XapI | RAATTY | 4 cut(s) | 556, 850, 978, 2406 |
| XbaI | TCTAGA | 2 cut(s) | 799, 4093 |
| XceI | RCATGY | 2 cut(s) | 1678, 3090 |
| XmaI | CCCGGG | 1 cut(s) | 4052 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1380, 1745, 2943 |
| XspI | CTAG | 9 cut(s) | 792, 800, 1616, 2085, 2202, 2735, 4077, 4094, 4120 |
| ZraI | GACGTC | 1 cut(s) | 385 |
| ZrmI | AGTACT | 2 cut(s) | 1770, 2897 |
| Zsp2I | ATGCAT | 1 cut(s) | 2422 |