Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

51850612 .. 51851451

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG254500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCATAGCAAAAGAAGGGAGCAAATGGACGGCAATGACTTCTACATTCCCCTTTCAAGCACAAATAACTCACCTGCTGCAACAAAGGAGGATCAATCTGAAGGTGCTGATGTAGATGAGGGAAGTGCAGAAGAAATAGATGAAAGTTCTTTTACTGAATATGCCAATGGAATAATAAATGAAATTAGGACCTTGGTGAGTGGCATTTCCTCTGAGAAGAGTCGAAAGACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCAAGAAATAGAAAAATTGGCTGTTGAAGCCTATAGTATCTTCAGAAGCACTGTTCCCACATTTATTAAGCTATTTCAGAATCTGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

117

Amino Acids

13.1

Weight (kDa)

4.75

Isoelectric Point (pI)

68.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	99
AcuI	CTGAAG	2 cut(s)	120, 286
AgsI	TTSAA	3 cut(s)	57, 263, 287
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
AlwI	GGATC	1 cut(s)	99
AlwNI	CAGNNNCTG	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	63, 208
AvaII	GGWCC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	213
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	189
CviJI	RGCY	3 cut(s)	281, 290, 331
CviKI_1	RGCY	3 cut(s)	281, 290, 331
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	120, 286
EcoO109I	RGGNCCY	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	192
FaiI	YATR	3 cut(s)	6, 162, 294
Fnu4HI	GCNGC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	220, 340
HphI	GGTGA	2 cut(s)	63, 208
Hpy188I	TCNGA	5 cut(s)	100, 214, 305, 339, 345
Hpy188III	TCNNGA	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	9, 95
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	4, 80, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	1 cut(s)	87
Lsp1109I	GCAGC	1 cut(s)	64
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	4 cut(s)	143, 229, 251, 292
MluCI	AATT	3 cut(s)	183, 275, 349
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	82, 112, 220
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	189
PspPPI	RGGWCCY	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	229
SetI	ASST	4 cut(s)	76, 106, 194, 333
SfcI	CTRYAG	1 cut(s)	292
SgeI	CNNG	5 cut(s)	69, 86, 205, 260, 275
SinI	GGWCC	1 cut(s)	189
Sse9I	AATT	3 cut(s)	183, 275, 349
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	223
TasI	AATT	3 cut(s)	183, 275, 349
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	156, 195
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.