Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

61834197 .. 61842154

Gene Structure 7958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG416800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTCGGAGGACCAGTGATTTGATGCTGTTCTGCATCTACCCGGTAAGAGTACGGCTGTCGTCTTTGACCATAAGTGTCAGAGGTATTCTCGAGCAAGAAATAGTAAAGGTTGCAGCTATGATCCTCCATATGACCTTAAACAGGGCTTACAGAAGGCAGTGCAAACTTCACCAAGAGTGCTGCAACATCGAACGTCAAATTTCAGGAGCTTTGGGGAAGTTATCCAACTTATTTTACAAGGCAGAATCATCAAACTCCCAAAATAAAAATAGCAGTAATGAATCCAGAGGAACTAAAGAGGAAACGTCGTCTCTGGAAGGGTTCTACGAAGAACTCCCTATCGCAAAAAAAATTGCTGTAGTGAATTTAGTAACTGTTTCTGTCAGGAAGTGCCCTGAGACAGCTAAGAATCTTCTATATTTGGAAACAGATTTACCTGATCATGTTGTTGTTGTTCACTGGGGAGTTTGCAAAGATGATGCTAAAAGATGGGAAATTCCAGCAGCCCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAAGGCTTTGCGAACCCGACTGCAGCAAAAGGAGGGAGCAAATGGACGTTGGGCATTCACAAATAACTCACCTGCTGCAACAAAGGAGGATCAATATGAAGGTGCTGATGTAGATGAGGGAAGTGCAGAAGAAATAGATGAAAGTTCTTTTACTGAATATGCCAATGGAATAATAAATGAAATAAGGACCTTGGTGAGTGGCATTTCCTCTGAGAAGAGTCGAAGGACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCAAGAAATAGAAAAATTGGCTGCTGAAGCCTATAGTATCTTCAGAAGCACTGTTCCCACATTTACTGAGGAAGCTATTTCAGAATCTGAAGAATTAGCACCCTCTGAAAATAACCTCAGGGACAGGCACGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

312

Amino Acids

35.04

Weight (kDa)

5.71

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	116 - 198	7.6e-22	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	622
Acc36I	ACCTGC	1 cut(s)	622
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	2 cut(s)	118, 639
AcsI	RAATTY	3 cut(s)	201, 367, 498
AcuI	CTGAAG	3 cut(s)	826, 846, 909
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	538, 803
AluBI	AGCT	4 cut(s)	119, 212, 407, 875
AluI	AGCT	4 cut(s)	119, 212, 407, 875
Alw26I	GTCTC	2 cut(s)	318, 395
AlwI	GGATC	2 cut(s)	118, 639
AlwNI	CAGNNNCTG	1 cut(s)	887
Ama87I	CYCGRG	1 cut(s)	92
ApeKI	GCWGC	6 cut(s)	116, 183, 506, 565, 617, 821
ApoI	RAATTY	3 cut(s)	201, 367, 498
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	795
AspS9I	GGNCC	2 cut(s)	12, 729
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	164, 603, 748
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	2 cut(s)	12, 729
AxyI	CCTNAGG	1 cut(s)	917
BaeGI	GKGCMC	1 cut(s)	398
BbvI	GCAGC	6 cut(s)	128, 170, 518, 577, 604, 808
BccI	CCATC	1 cut(s)	486
BceAI	ACGGC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	318, 395
BfmI	CTRYAG	3 cut(s)	360, 563, 832
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	6 cut(s)	117, 184, 507, 566, 618, 822
BlsI	GCNGC	6 cut(s)	118, 185, 508, 567, 619, 823
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	12, 729
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	12, 729
BmrFI	CCNGG	1 cut(s)	44
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	3 cut(s)	15, 45, 472
BmuI	ACTGGG	1 cut(s)	472
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	732
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	15, 467
Bse21I	CCTNAGG	1 cut(s)	917
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	4 cut(s)	390, 744, 858, 931
BseNI	ACTGG	2 cut(s)	15, 467
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	6 cut(s)	128, 170, 518, 577, 604, 808
BsgI	GTGCAG	1 cut(s)	687
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	935
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	318, 395
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	935
BsmI	GAATGC	2 cut(s)	596, 795
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	123, 442, 631
BspACI	CCGC	1 cut(s)	518
BspCNI	CTCAG	4 cut(s)	391, 745, 859, 930
BspMAI	CTGCAG	1 cut(s)	567
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	2 cut(s)	118, 639
BsrI	ACTGG	2 cut(s)	15, 467
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	3 cut(s)	123, 442, 631
BssT1I	CCWWGG	1 cut(s)	732
Bst4CI	ACNGT	3 cut(s)	379, 529, 853
Bst6I	CTCTTC	1 cut(s)	752
BstDEI	CTNAG	5 cut(s)	399, 408, 753, 867, 917
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	3 cut(s)	126, 445, 634
BstMAI	GTCTC	2 cut(s)	318, 395
BstMBI	GATC	3 cut(s)	123, 442, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	827
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	3 cut(s)	360, 563, 832
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	6 cut(s)	128, 170, 518, 577, 604, 808
Bsu36I	CCTNAGG	1 cut(s)	917
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	4 cut(s)	22, 167, 460, 849
BveI	ACCTGC	1 cut(s)	622
CaiI	CAGNNNCTG	1 cut(s)	887
Cfr13I	GGNCC	2 cut(s)	12, 729
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	1 cut(s)	446
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	5 cut(s)	399, 408, 753, 867, 917
DpnI	GATC	3 cut(s)	125, 444, 633
DpnII	GATC	3 cut(s)	123, 442, 631
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
EciI	GGCGGA	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	732
Eco47I	GGWCC	2 cut(s)	12, 729
Eco57I	CTGAAG	3 cut(s)	826, 846, 909
Eco81I	CCTNAGG	1 cut(s)	917
Eco88I	CYCGRG	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	1 cut(s)	449
FaiI	YATR	9 cut(s)	74, 122, 132, 134, 421, 447, 639, 702, 834
FaqI	GGGAC	1 cut(s)	935
FatI	CATG	1 cut(s)	445
FauNDI	CATATG	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	6 cut(s)	117, 184, 507, 566, 618, 822
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	6 cut(s)	117, 184, 507, 566, 618, 822
GluI	GCNGC	6 cut(s)	117, 184, 507, 566, 618, 822
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	449
HinfI	GANTC	5 cut(s)	248, 284, 412, 760, 884
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	164, 603, 748
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	7 cut(s)	9, 83, 754, 845, 883, 889, 907
Hpy188III	TCNNGA	6 cut(s)	92, 207, 288, 317, 388, 803
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	4 cut(s)	150, 314, 635, 759
HpyCH4III	ACNGT	3 cut(s)	379, 529, 853
HpyCH4IV	ACGT	3 cut(s)	196, 308, 589
HpyCH4V	TGCA	8 cut(s)	36, 116, 165, 186, 474, 565, 620, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	827
HpyF3I	CTNAG	5 cut(s)	399, 408, 753, 867, 917
HpySE526I	ACGT	3 cut(s)	196, 308, 589
Hsp92II	CATG	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	123, 442, 631
LmnI	GCTCC	2 cut(s)	209, 578
Lsp1109I	GCAGC	6 cut(s)	128, 170, 518, 577, 604, 808
LweI	GCATC	3 cut(s)	15, 45, 472
MaeII	ACGT	3 cut(s)	196, 308, 589
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	125, 444, 633
MboI	GATC	3 cut(s)	123, 442, 631
MboII	GAAGA	7 cut(s)	344, 407, 683, 769, 791, 832, 902
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	6 cut(s)	201, 354, 367, 498, 815, 893
MlyI	GAGTC	1 cut(s)	769
MmeI	TCCRAC	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	1 cut(s)	140
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	44
Mva1269I	GAATGC	2 cut(s)	596, 795
MwoI	GCNNNNNNNGC	1 cut(s)	827
NciI	CCSGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	132
NdeII	GATC	3 cut(s)	123, 442, 631
NlaIII	CATG	1 cut(s)	449
PaeR7I	CTCGAG	1 cut(s)	92
PaqCI	CACCTGC	1 cut(s)	622
PctI	GAATGC	2 cut(s)	596, 795
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	4 cut(s)	248, 284, 412, 884
PkrI	GCNGC	6 cut(s)	118, 185, 508, 567, 619, 823
PleI	GAGTC	1 cut(s)	768
PpsI	GAGTC	1 cut(s)	768
PpuMI	RGGWCCY	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	729
PspPI	GGNCC	2 cut(s)	12, 729
PspPPI	RGGWCCY	1 cut(s)	729
PstI	CTGCAG	1 cut(s)	567
PstNI	CAGNNNCTG	1 cut(s)	887
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	6 cut(s)	117, 184, 507, 566, 618, 822
Sau3AI	GATC	3 cut(s)	123, 442, 631
Sau96I	GGNCC	2 cut(s)	12, 729
SchI	GAGTC	1 cut(s)	769
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	398
SfaNI	GCATC	3 cut(s)	15, 45, 472
SfcI	CTRYAG	3 cut(s)	360, 563, 832
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	2 cut(s)	12, 729
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	6 cut(s)	201, 354, 367, 498, 815, 893
SsiI	CCGC	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	3 cut(s)	379, 529, 853
TaiI	ACGT	3 cut(s)	199, 311, 592
TaqI	TCGA	3 cut(s)	93, 192, 763
TasI	AATT	6 cut(s)	201, 354, 367, 498, 815, 893
TfiI	GAWTC	4 cut(s)	248, 284, 412, 884
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	4 cut(s)	22, 167, 467, 856
TseI	GCWGC	6 cut(s)	116, 183, 506, 565, 617, 821
TspDTI	ATGAA	4 cut(s)	297, 654, 696, 735
TspRI	CASTG	4 cut(s)	22, 167, 467, 856
VpaK11BI	GGWCC	2 cut(s)	12, 729
XagI	CCTNNNNNAGG	1 cut(s)	142
XapI	RAATTY	3 cut(s)	201, 367, 498
XhoI	CTCGAG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.