Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

35499067 .. 35500005

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG268600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCAAAAAAAATTGCTGTAGTGAATTCAGTAACTGTTTCTGTCAGGAAGTGCCCTGAGACAGCTAAGAATCTTCTATATTTGGAAATAGATTTACCTGATCATGTTGTTGTTCACTGGGGAGTTTGCAAAGATGATGCTAAAAGATGGGAAATTCCAGCAGCTCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAAGGCTTTGCGAACTCGACTGCAGCAAAAGGAGGGAGCAAATGGACGTTGGGCATTGTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

87

Amino Acids

9.83

Weight (kDa)

9.3

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	4 - 79	5.6e-24	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	25, 153
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	2 cut(s)	65, 164
AluI	AGCT	2 cut(s)	65, 164
Alw26I	GTCTC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	161, 220
ApoI	RAATTY	2 cut(s)	25, 153
BaeGI	GKGCMC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	173, 232
BccI	CCATC	1 cut(s)	141
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	53
BfmI	CTRYAG	2 cut(s)	18, 218
BisI	GCNGC	2 cut(s)	162, 221
BlsI	GCNGC	2 cut(s)	163, 222
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	173, 232
BsmAI	GTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	37, 184
BstDEI	CTNAG	2 cut(s)	57, 66
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	100
BstSFI	CTRYAG	2 cut(s)	18, 218
BstSLI	GKGCMC	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	173, 232
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	35
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	3 cut(s)	65, 164, 203
CviKI_1	RGCY	3 cut(s)	65, 164, 203
DdeI	CTNAG	2 cut(s)	57, 66
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	25
FaeI	CATG	1 cut(s)	107
FaiI	YATR	2 cut(s)	79, 105
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	162, 221
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	162, 221
GluI	GCNGC	2 cut(s)	162, 221
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	115, 258
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	115, 258
HpyCH4III	ACNGT	2 cut(s)	37, 184
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	129, 220
HpyF3I	CTNAG	2 cut(s)	57, 66
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	169, 233
LpnPI	CCDG	6 cut(s)	31, 69, 103, 111, 171, 189
Lsp1109I	GCAGC	2 cut(s)	173, 232
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	3 cut(s)	12, 25, 153
MnlI	CCTC	1 cut(s)	223
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	163, 222
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	35
SatI	GCNGC	2 cut(s)	162, 221
Sau3AI	GATC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	4 cut(s)	67, 100, 166, 247
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	2 cut(s)	18, 218
SgeI	CNNG	9 cut(s)	58, 68, 110, 116, 130, 170, 188, 205, 225
Sse9I	AATT	3 cut(s)	12, 25, 153
SsiI	CCGC	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	37, 184
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	214
TasI	AATT	3 cut(s)	12, 25, 153
TfiI	GAWTC	1 cut(s)	70
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	2 cut(s)	161, 220
TspRI	CASTG	1 cut(s)	122
XapI	RAATTY	2 cut(s)	25, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.