Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

15797386 .. 15800480

Gene Structure 3095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG169500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACAGTTGTTACACGTGTCTCCCACAGAACCCATTCCGCCATTAGTCCCACCTCCGTTTTGGCTCTGGCTTGCCATTTCTTGCTTCTGGTAAGTGATGGTGATGGTTATCTTGAGAGGATATTCTTTGAGACCAGCAGCTGTGAGGGCTGGAAATCTTATCTGCGAATGGATGGAAGATGCTGGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTAGGAATGCTAGTGCTGAGGCTCTACTACTTGGTTCTCATTTGGATACTGTTGTTGAGGCCAGGATATTTGATGGAAATTACTCTTTGGTGGCGCTGCTAGAGTTCCAACTACTAATATCATGTTGCTTTTGCTCAACATCTATTCACATTGAAGAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAATGCATAGCTGGACAGACAAGACTAAAGGTAACATTCGCCGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTGTATGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCACAATTGATCGTTTGGATGAAGTACCTGTATTAATGTCTGGAGCAGGACATGGTGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGATTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTCCCCTGAAGAACATGTATTGGATGATGATGTTTGGGCGTCTGGTTTGGCAATCCTGGCATTCATTGAGACATTACTGTATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

258

Amino Acids

28.48

Weight (kDa)

5.42

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	39, 667
AcuI	CTGAAG	1 cut(s)	717
AcvI	CACGTG	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	728
AfaI	GTAC	3 cut(s)	210, 393, 591
AflIII	ACRYGT	3 cut(s)	14, 16, 703
AgsI	TTSAA	1 cut(s)	380
AjiI	CACGTC	1 cut(s)	500
AjnI	CCWGG	2 cut(s)	287, 744
AluBI	AGCT	3 cut(s)	141, 437, 506
AluI	AGCT	3 cut(s)	141, 437, 506
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	4 cut(s)	25, 125, 639, 752
Alw44I	GTGCAC	1 cut(s)	565
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	2 cut(s)	285, 386
ApaLI	GTGCAC	1 cut(s)	565
ApeKI	GCWGC	2 cut(s)	138, 322
AseI	ATTAAT	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	569
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
BbrPI	CACGTG	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	150, 309
BccI	CCATC	4 cut(s)	92, 98, 167, 293
BceAI	ACGGC	1 cut(s)	452
BciT130I	CCWGG	2 cut(s)	289, 746
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	4 cut(s)	25, 125, 639, 752
BfaI	CTAG	3 cut(s)	237, 326, 416
BfoI	RGCGCY	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	2 cut(s)	139, 323
BlsI	GCNGC	2 cut(s)	140, 324
Bme1390I	CCNGG	2 cut(s)	289, 746
BmgBI	CACGTC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	386
BmrFI	CCNGG	2 cut(s)	289, 746
BmsI	GCATC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	2 cut(s)	17, 479
BsaBI	GATNNNNATC	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	728
BsaI	GGTCTC	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	630
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	289, 746
BseGI	GGATG	3 cut(s)	178, 589, 718
BseJI	GATNNNNATC	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	690
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	150, 309
BshFI	GGCC	2 cut(s)	287, 388
BsiHKAI	GWGCWC	1 cut(s)	569
BslFI	GGGAC	2 cut(s)	33, 510
BsmAI	GTCTC	4 cut(s)	25, 125, 639, 752
BsmFI	GGGAC	2 cut(s)	33, 510
BsmI	GAATGC	2 cut(s)	238, 749
BsnI	GGCC	2 cut(s)	287, 388
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	574
BspACI	CCGC	2 cut(s)	39, 667
BspANI	GGCC	2 cut(s)	287, 388
BspCNI	CTCAG	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	630
BsrGI	TGTACA	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	399
BssMI	GATC	1 cut(s)	574
BssNI	GRCGYC	1 cut(s)	728
Bst2UI	CCWGG	2 cut(s)	289, 746
Bst4CI	ACNGT	3 cut(s)	7, 277, 768
BstACI	GRCGYC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	208
BstBAI	YACGTR	2 cut(s)	17, 479
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	243, 645
BstF5I	GGATG	3 cut(s)	178, 589, 718
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	4 cut(s)	25, 125, 639, 752
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 746
BstNI	CCWGG	2 cut(s)	289, 746
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	2 cut(s)	287, 744
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	2 cut(s)	150, 309
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	287, 388
BtrI	CACGTC	1 cut(s)	500
BtsCI	GGATG	3 cut(s)	178, 589, 718
Cac8I	GCNNGC	1 cut(s)	73
CaiI	CAGNNNCTG	1 cut(s)	141
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	386
CseI	GACGC	1 cut(s)	717
Csp6I	GTAC	3 cut(s)	209, 392, 590
CviAII	CATG	5 cut(s)	212, 348, 493, 617, 704
CviQI	GTAC	3 cut(s)	209, 392, 590
DdeI	CTNAG	2 cut(s)	243, 645
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
EciI	GGCGGA	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	717
Eco72I	CACGTG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	287, 744
EcoT22I	ATGCAT	1 cut(s)	434
FaeI	CATG	5 cut(s)	215, 351, 496, 620, 707
FaqI	GGGAC	2 cut(s)	33, 510
FatI	CATG	5 cut(s)	211, 347, 492, 616, 703
Fnu4HI	GCNGC	2 cut(s)	139, 323
FokI	GGATG	3 cut(s)	185, 596, 725
Fsp4HI	GCNGC	2 cut(s)	139, 323
FspBI	CTAG	3 cut(s)	237, 326, 416
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	2 cut(s)	139, 323
GsuI	CTGGAG	1 cut(s)	627
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	2 cut(s)	287, 388
HgaI	GACGC	1 cut(s)	717
HhaI	GCGC	1 cut(s)	322
Hin1I	GRCGYC	1 cut(s)	728
Hin1II	CATG	5 cut(s)	215, 351, 496, 620, 707
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188III	TCNNGA	2 cut(s)	113, 606
Hpy8I	GTNNAC	1 cut(s)	567
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	3 cut(s)	7, 277, 768
HpyCH4IV	ACGT	3 cut(s)	16, 478, 499
HpyCH4V	TGCA	4 cut(s)	432, 482, 567, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 746
HpyF3I	CTNAG	2 cut(s)	243, 645
HpySE526I	ACGT	3 cut(s)	16, 478, 499
Hsp92I	GRCGYC	1 cut(s)	728
Hsp92II	CATG	5 cut(s)	215, 351, 496, 620, 707
HspAI	GCGC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	1 cut(s)	608
Lsp1109I	GCAGC	2 cut(s)	150, 309
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	3 cut(s)	237, 326, 416
MaeII	ACGT	3 cut(s)	16, 478, 499
MaeIII	GTNAC	3 cut(s)	10, 457, 686
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	3 cut(s)	189, 392, 710
MfeI	CAATTG	2 cut(s)	483, 570
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	4 cut(s)	304, 483, 518, 570
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	9 cut(s)	64, 111, 139, 217, 238, 277, 423, 668, 671
Mph1103I	ATGCAT	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	3 cut(s)	426, 599, 641
MspA1I	CMGCKG	2 cut(s)	141, 669
MspR9I	CCNGG	2 cut(s)	289, 746
MunI	CAATTG	2 cut(s)	483, 570
Mva1269I	GAATGC	2 cut(s)	238, 749
MvaI	CCWGG	2 cut(s)	289, 746
MwoI	GCNNNNNNNGC	2 cut(s)	147, 746
NdeII	GATC	1 cut(s)	574
NlaIII	CATG	5 cut(s)	215, 351, 496, 620, 707
NmuCI	GTSAC	1 cut(s)	686
NsiI	ATGCAT	1 cut(s)	434
NspI	RCATGY	1 cut(s)	707
PciI	ACATGT	1 cut(s)	703
PctI	GAATGC	2 cut(s)	238, 749
PdmI	GAANNNNTTC	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	140, 324
PmaCI	CACGTG	1 cut(s)	17
PmlI	CACGTG	1 cut(s)	17
Ppu21I	YACGTR	2 cut(s)	17, 479
PscI	ACATGT	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	287, 744
PspCI	CACGTG	1 cut(s)	17
PspGI	CCWGG	2 cut(s)	287, 744
PspPI	GGNCC	1 cut(s)	386
PstNI	CAGNNNCTG	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	141
RsaI	GTAC	3 cut(s)	210, 393, 591
RsaNI	GTAC	3 cut(s)	209, 392, 590
SaqAI	TTAA	3 cut(s)	426, 599, 641
SatI	GCNGC	2 cut(s)	139, 323
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	289, 746
SduI	GDGCHC	1 cut(s)	569
SfaNI	GCATC	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	4 cut(s)	304, 483, 518, 570
SsiI	CCGC	2 cut(s)	39, 667
SspMI	CTAG	3 cut(s)	237, 326, 416
StyD4I	CCNGG	2 cut(s)	287, 744
TaaI	ACNGT	3 cut(s)	7, 277, 768
TaiI	ACGT	3 cut(s)	19, 481, 502
TaqI	TCGA	2 cut(s)	217, 673
TasI	AATT	4 cut(s)	304, 483, 518, 570
TatI	WGTACW	2 cut(s)	208, 391
Tru1I	TTAA	3 cut(s)	426, 599, 641
Tru9I	TTAA	3 cut(s)	426, 599, 641
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	2 cut(s)	138, 322
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	3 cut(s)	531, 600, 742
TspGWI	ACGGA	1 cut(s)	46
VneI	GTGCAC	1 cut(s)	565
VspI	ATTAAT	1 cut(s)	599
XceI	RCATGY	1 cut(s)	707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	3 cut(s)	237, 326, 416
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.