Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

64725266 .. 64743672

Gene Structure 18407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGGTGGAGAGGAAGTGAAAATCGAAGAACTACATAAAGGTTCTAGGTGGTTGGTTGGGCTGATTGGGGAAAATGGTGGAGCTGCAGACGCCAAAAATCTACGGGTGAAGGCAGAATCATCAAACTCCCAAAATAAAAATAGCAGTAATGAATCCAGAGGAACTAAAGAGGAAACGAGGTCTCTAGAAGGGTTCTACGAAGAACTCCCTATCGCAAAAAAAATTGCTGTAGTGAATTCATGTTTCACGGACATCTTGAACATTGTGAGAACCAATTTAGAGGTGATCACCAAAATAACGTTCAACGCAAATAACTCACCTCCTGCAGCAAAGGAGGATCAATCTGAAGGTGCTGATGTAGATGAGGGAAGTGCAGAAGAAATAGATGAAAGTTCTTTTACTGAATATGCCAATGGAATAATAAATGATATAAGGACCCTGGTGAGTGGCATTTCCTCTGAGAAGAGTCGAAAGACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCCAAAGAAGCACAAGAAAGGACAGGCACGAGATTTGGAATATCGTGCCAAGGTTTTAATTGGGAATCTCATAAATCTGGAAGATGGTACATACTACATGGAGCTCAAAGATAAAGCTGCTGAATTGTCTTCACTAGGTTTCACTGTGATTTGGTTACCACCCCCTACAGATTCTGTGTCGCCTAAAGGGTACGTGCCGACGGATTTGTATAATCTGAACTCCAGTGCATTGGTATCAGGTCTCAGTTATGCTCCATTCGAGTCATCGTCGCAGAAATACTTGACGGACAATGGGAGTGTCTTTATGACCAAGGTGGGTATTTCATTATCAATGGTAGTGAGACAAAGCCCAGCTATCTCCGACCAAATTCGCCGACCTCTTCCTCATCTTGCATCTCAATTATTGGTTCCCAATACATCATCACGTCCTCATCATCAACCTTACCATGATTGGTCGATGGTGAATTTGAACTCTGCATTTTTGTTTTCTGCAATAGCTCTTCGGTTAATTTCCGACAATCTCTGGGCATCAGGTTTCTCAAGATTTGCATCCCCAAAAGAAACATTTAACAAGTCATCCTTATCCCTCTCCCTCGAAAGTTTCTCCCAATACTTGGTCAAGTATCCAGCACCGGCAGCTGCTGCGAGCCTGCGACAACCCACAAATCCATATCCACTATCCCTTCTAACAAAGAGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

402

Amino Acids

44.1

Weight (kDa)

6.64

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1120
AclI	AACGTT	1 cut(s)	299
AclWI	GGATC	1 cut(s)	345
AcsI	RAATTY	3 cut(s)	235, 873, 970
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	595, 698
AfiI	CCNNNNNNNGG	1 cut(s)	1120
AgsI	TTSAA	3 cut(s)	259, 304, 976
AjiI	CACGTC	1 cut(s)	932
AjnI	CCWGG	1 cut(s)	438
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	6 cut(s)	83, 610, 623, 860, 1004, 1145
AluI	AGCT	6 cut(s)	83, 610, 623, 860, 1004, 1145
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	3 cut(s)	186, 752, 841
AlwI	GGATC	1 cut(s)	345
AlwNI	CAGNNNCTG	2 cut(s)	680, 1148
ApeKI	GCWGC	6 cut(s)	83, 326, 623, 1142, 1145, 1148
ApoI	RAATTY	3 cut(s)	235, 873, 970
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	6 cut(s)	118, 280, 295, 309, 454, 979
AvaII	GGWCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	612
BauI	CACGAG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	6 cut(s)	70, 338, 610, 1132, 1135, 1154
BccI	CCATC	2 cut(s)	584, 958
BciT130I	CCWGG	1 cut(s)	440
BciVI	GTATCC	1 cut(s)	1140
BclI	TGATCA	1 cut(s)	285
BcoDI	GTCTC	3 cut(s)	186, 752, 841
BfaI	CTAG	3 cut(s)	45, 185, 641
BfmI	CTRYAG	4 cut(s)	84, 228, 324, 672
BfuI	GTATCC	1 cut(s)	1140
BisI	GCNGC	6 cut(s)	84, 327, 624, 1143, 1146, 1149
BlsI	GCNGC	6 cut(s)	85, 328, 625, 1144, 1147, 1150
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	435
BmgBI	CACGTC	1 cut(s)	932
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	2 cut(s)	437, 915
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	3 cut(s)	908, 1043, 1064
BpiI	GAAGAC	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	1030
BsaAI	YACGTR	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	1054
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	2 cut(s)	186, 752
BsaJI	CCNNGG	3 cut(s)	438, 555, 816
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	1120
Bse118I	RCCGGY	1 cut(s)	1138
Bse1I	ACTGG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	1054
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	3 cut(s)	438, 555, 816
BseGI	GGATG	2 cut(s)	1055, 1082
BseJI	GATNNNNATC	1 cut(s)	1054
BseLI	CCNNNNNNNGG	1 cut(s)	1120
BseMII	CTCAG	2 cut(s)	450, 763
BseNI	ACTGG	1 cut(s)	729
BseXI	GCAGC	6 cut(s)	70, 338, 610, 1132, 1135, 1154
BseYI	CCCAGC	1 cut(s)	856
BsgI	GTGCAG	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	1 cut(s)	1139
BslI	CCNNNNNNNGG	1 cut(s)	1120
BsmAI	GTCTC	3 cut(s)	186, 752, 841
BsmI	GAATGC	1 cut(s)	501
Bso31I	GGTCTC	2 cut(s)	186, 752
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	2 cut(s)	285, 337
BspCNI	CTCAG	2 cut(s)	451, 762
BspLI	GGNNCC	2 cut(s)	437, 915
BspMAI	CTGCAG	2 cut(s)	88, 328
BspPI	GGATC	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	1011
BspTNI	GGTCTC	2 cut(s)	186, 752
BsrFI	RCCGGY	1 cut(s)	1138
BsrI	ACTGG	1 cut(s)	729
BssAI	RCCGGY	1 cut(s)	1138
BssECI	CCNNGG	3 cut(s)	438, 555, 816
BssMI	GATC	2 cut(s)	285, 337
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	2 cut(s)	555, 816
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	3 cut(s)	458, 891, 1011
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	1148
BstBAI	YACGTR	1 cut(s)	700
BstC8I	GCNNGC	2 cut(s)	1153, 1157
BstDEI	CTNAG	2 cut(s)	459, 749
BstEII	GGTNACC	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	1055, 1082
BstKTI	GATC	2 cut(s)	288, 340
BstMAI	GTCTC	3 cut(s)	186, 752, 841
BstMBI	GATC	2 cut(s)	285, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 1142, 1148
BstNI	CCWGG	1 cut(s)	440
BstPI	GGTNACC	1 cut(s)	660
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	4 cut(s)	84, 228, 324, 672
BstV1I	GCAGC	6 cut(s)	70, 338, 610, 1132, 1135, 1154
BstV2I	GAAGAC	1 cut(s)	627
BstXI	CCANNNNNNTGG	1 cut(s)	736
BsuI	GTATCC	1 cut(s)	1140
BtrI	CACGTC	1 cut(s)	932
BtsCI	GGATG	2 cut(s)	1055, 1082
BtsIMutI	CAGTG	2 cut(s)	648, 736
Cac8I	GCNNGC	2 cut(s)	1153, 1157
CaiI	CAGNNNCTG	2 cut(s)	680, 1148
Cfr10I	RCCGGY	1 cut(s)	1138
Cfr13I	GGNCC	1 cut(s)	435
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	594, 697
CviAII	CATG	3 cut(s)	240, 604, 953
CviQI	GTAC	2 cut(s)	594, 697
DdeI	CTNAG	2 cut(s)	459, 749
DpnI	GATC	2 cut(s)	287, 339
DpnII	GATC	2 cut(s)	285, 337
Eam1104I	CTCTTC	3 cut(s)	458, 891, 1011
EarI	CTCTTC	3 cut(s)	458, 891, 1011
Ecl136II	GAGCTC	1 cut(s)	610
Eco130I	CCWWGG	2 cut(s)	555, 816
Eco24I	GRGCYC	1 cut(s)	612
Eco31I	GGTCTC	2 cut(s)	186, 752
Eco47I	GGWCC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	366
Eco91I	GGTNACC	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	610
EcoO109I	RGGNCCY	1 cut(s)	435
EcoO65I	GGTNACC	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	555, 816
EcoT38I	GRGCYC	1 cut(s)	612
ErhI	CCWWGG	2 cut(s)	555, 816
FaeI	CATG	3 cut(s)	243, 607, 956
FalI	AAGNNNNNCTT	2 cut(s)	1070, 1102
FatI	CATG	3 cut(s)	239, 603, 952
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	84, 327, 624, 1143, 1146, 1149
FokI	GGATG	2 cut(s)	1042, 1069
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	6 cut(s)	84, 327, 624, 1143, 1146, 1149
FspBI	CTAG	3 cut(s)	45, 185, 641
GluI	GCNGC	6 cut(s)	84, 327, 624, 1143, 1146, 1149
GsaI	CCCAGC	1 cut(s)	860
GsuI	CTGGAG	1 cut(s)	712
HapII	CCGG	1 cut(s)	1139
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	243, 607, 956
HinfI	GANTC	6 cut(s)	116, 152, 466, 571, 677, 767
HpaII	CCGG	1 cut(s)	1139
HphI	GGTGA	6 cut(s)	118, 280, 295, 309, 454, 979
Hpy188I	TCNGA	5 cut(s)	346, 460, 723, 868, 1021
Hpy188III	TCNNGA	5 cut(s)	156, 185, 256, 584, 1047
Hpy99I	CGWCG	2 cut(s)	709, 778
HpyAV	CCTTC	4 cut(s)	103, 182, 341, 1199
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	3 cut(s)	299, 699, 931
HpyCH4V	TGCA	8 cut(s)	86, 326, 374, 734, 899, 983, 998, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 1142, 1148
HpyF3I	CTNAG	2 cut(s)	459, 749
HpySE526I	ACGT	3 cut(s)	299, 699, 931
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	243, 607, 956
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	285, 337
LguI	GCTCTTC	1 cut(s)	1011
LmnI	GCTCC	3 cut(s)	80, 607, 763
Lsp1109I	GCAGC	6 cut(s)	70, 338, 610, 1132, 1135, 1154
LweI	GCATC	3 cut(s)	908, 1043, 1064
MaeI	CTAG	3 cut(s)	45, 185, 641
MaeII	ACGT	3 cut(s)	299, 699, 931
MaeIII	GTNAC	1 cut(s)	660
MalI	GATC	2 cut(s)	287, 339
MboI	GATC	2 cut(s)	285, 337
MboII	GAAGA	9 cut(s)	38, 212, 389, 475, 497, 599, 627, 878, 998
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	9 cut(s)	222, 235, 274, 564, 629, 873, 905, 970, 1014
MlyI	GAGTC	2 cut(s)	475, 776
MmeI	TCCRAC	2 cut(s)	891, 1044
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	3 cut(s)	563, 1013, 1074
MspA1I	CMGCKG	1 cut(s)	1145
MspI	CCGG	1 cut(s)	1139
MspR9I	CCNGG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	3 cut(s)	89, 1142, 1148
NdeII	GATC	2 cut(s)	285, 337
NlaIII	CATG	3 cut(s)	243, 607, 956
NlaIV	GGNNCC	2 cut(s)	437, 915
PciSI	GCTCTTC	1 cut(s)	1011
PctI	GAATGC	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	4 cut(s)	116, 152, 571, 677
PflMI	CCANNNNNTGG	1 cut(s)	1120
PkrI	GCNGC	6 cut(s)	85, 328, 625, 1144, 1147, 1150
PleI	GAGTC	2 cut(s)	474, 775
PpsI	GAGTC	2 cut(s)	474, 775
Ppu21I	YACGTR	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	612
Psp1406I	AACGTT	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	438
PspEI	GGTNACC	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	437, 915
PspPI	GGNCC	1 cut(s)	435
PspPPI	RGGWCCY	1 cut(s)	435
PstI	CTGCAG	2 cut(s)	88, 328
PstNI	CAGNNNCTG	2 cut(s)	680, 1148
PvuII	CAGCTG	1 cut(s)	1145
RsaI	GTAC	2 cut(s)	595, 698
RsaNI	GTAC	2 cut(s)	594, 697
SacI	GAGCTC	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	1011
SaqAI	TTAA	3 cut(s)	563, 1013, 1074
SatI	GCNGC	6 cut(s)	84, 327, 624, 1143, 1146, 1149
Sau3AI	GATC	2 cut(s)	285, 337
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	2 cut(s)	475, 776
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	3 cut(s)	908, 1043, 1064
SfcI	CTRYAG	4 cut(s)	84, 228, 324, 672
SinI	GGWCC	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	1045
SmoI	CTYRAG	1 cut(s)	1045
Sse9I	AATT	9 cut(s)	222, 235, 274, 564, 629, 873, 905, 970, 1014
SspMI	CTAG	3 cut(s)	45, 185, 641
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	2 cut(s)	555, 816
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	3 cut(s)	302, 702, 934
TaqI	TCGA	5 cut(s)	24, 469, 765, 962, 1101
TasI	AATT	9 cut(s)	222, 235, 274, 564, 629, 873, 905, 970, 1014
TfiI	GAWTC	4 cut(s)	116, 152, 571, 677
Tru1I	TTAA	3 cut(s)	563, 1013, 1074
Tru9I	TTAA	3 cut(s)	563, 1013, 1074
TscAI	CASTG	2 cut(s)	655, 736
TseI	GCWGC	6 cut(s)	83, 326, 623, 1142, 1145, 1148
TspDTI	ATGAA	4 cut(s)	165, 228, 402, 819
TspGWI	ACGGA	3 cut(s)	263, 722, 806
TspRI	CASTG	2 cut(s)	655, 736
Van91I	CCANNNNNTGG	1 cut(s)	1120
VpaK11BI	GGWCC	1 cut(s)	435
XapI	RAATTY	3 cut(s)	235, 873, 970
XbaI	TCTAGA	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	3 cut(s)	45, 185, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.