Rh6DG025600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000937
Physical Location & Seq
Forward (+)
2235067 .. 2236486
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG025600.1

Sequence Viewer

Length: 237 bp
ATGATGAGAGTTTTACGAGATGATGATGCAGAAGGTCAGAATACTCGGGAACAGACAGAGAGAATACCTAATGATCAAGCTTTTACTGCTGTTTCTCATATGGACACTGATTGTGAAACTATATCAATAAAACGAAGACAGGAAGCTGAGAAAGAGAAGTTTTCTGACACTCTCAGAGTTGGTGCTTGGAGGTTGCATGTATTCAAGAATCTGGGAAGGCCAGATTTTTCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.1

Weight (kDa)

5.63

Isoelectric Point (pI)

24.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 2 cut(s) 80, 146
AluI AGCT 2 cut(s) 80, 146
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 142
BclI TGATCA 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 45
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 142
BseMII CTCAG 2 cut(s) 138, 187
BshFI GGCC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 45
BsnI GGCC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 45
Bsp143I GATC 1 cut(s) 73
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 2 cut(s) 139, 186
BssMI GATC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 147, 173
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 105
CviAII CATG 2 cut(s) 197, 234
CviJI RGCY 3 cut(s) 80, 146, 220
CviKI_1 RGCY 3 cut(s) 80, 146, 220
DdeI CTNAG 2 cut(s) 147, 173
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 45
FaeI CATG 2 cut(s) 200, 237
FaiI YATR 5 cut(s) 99, 101, 122, 198, 235
FatI CATG 2 cut(s) 196, 233
FauNDI CATATG 1 cut(s) 99
FbaI TGATCA 1 cut(s) 73
HaeIII GGCC 1 cut(s) 220
Hin1II CATG 2 cut(s) 200, 237
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 1 cut(s) 208
Hpy188I TCNGA 3 cut(s) 39, 166, 176
Hpy188III TCNNGA 2 cut(s) 47, 205
HpyAV CCTTC 2 cut(s) 26, 210
HpyCH4V TGCA 3 cut(s) 29, 196, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 147, 173
Hsp92II CATG 2 cut(s) 200, 237
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 2 cut(s) 125, 197
LweI GCATC 1 cut(s) 16
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 147
MnlI CCTC 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeI CATATG 1 cut(s) 99
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 200, 237
NspI RCATGY 1 cut(s) 200
PfeI GAWTC 1 cut(s) 208
Sau3AI GATC 1 cut(s) 73
SetI ASST 5 cut(s) 37, 70, 82, 148, 194
SfaNI GCATC 1 cut(s) 16
TfiI GAWTC 1 cut(s) 208
TscAI CASTG 1 cut(s) 112
TspRI CASTG 1 cut(s) 112
XceI RCATGY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.