Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

54810754 .. 54815494

Gene Structure 4741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG403000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGTTTGAGCCATGGAGCTTTGGGGAAGTTATCCAACTTATTTTACAAGGCAGAATCATCAAACTCCCAAAATAAAAATAGCAGTAATGAATCCAGAGGAACTAAAGAGGAAACGTCGTCTCTGGAAGGGTTCTACGAAGAACTCCCTATCGCAAAAAAAATTGCTGTAGTGAATTTAGTAACTGTTTCTGTCAGGAAGTGCCCTGAGACAGCTAAGAATCTTCTATATTTGGAAACAGATTTACCTGATCATGTTGTTGTTGTTCACTGGGGAGTTTGCAAAGATGATGCTAAAAGATGGGAAATTCCAGCAGCCCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAAGGCTTTGCGAACCCGACTGCAGCAAAAGGAGGGAGCAAATGGACGTTGGGCATTGTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

138

Amino Acids

15.39

Weight (kDa)

8.53

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	52 - 130	1.7e-22	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	326
AcsI	RAATTY	2 cut(s)	175, 306
AgsI	TTSAA	1 cut(s)	346
AluBI	AGCT	2 cut(s)	20, 215
AluI	AGCT	2 cut(s)	20, 215
Alw26I	GTCTC	2 cut(s)	126, 203
ApeKI	GCWGC	2 cut(s)	314, 373
ApoI	RAATTY	2 cut(s)	175, 306
BaeGI	GKGCMC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	326, 385
BccI	CCATC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	126, 203
BfmI	CTRYAG	2 cut(s)	168, 371
BisI	GCNGC	2 cut(s)	315, 374
BlsI	GCNGC	2 cut(s)	316, 375
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	326, 385
BsmAI	GTCTC	2 cut(s)	126, 203
BsmBI	CGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	187, 337
BstDEI	CTNAG	2 cut(s)	207, 216
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	2 cut(s)	126, 203
BstMBI	GATC	1 cut(s)	250
BstSFI	CTRYAG	2 cut(s)	168, 371
BstSLI	GKGCMC	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	326, 385
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	268
CviAII	CATG	2 cut(s)	14, 254
CviJI	RGCY	5 cut(s)	12, 20, 215, 317, 356
CviKI_1	RGCY	5 cut(s)	12, 20, 215, 317, 356
DdeI	CTNAG	2 cut(s)	207, 216
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	2 cut(s)	17, 257
FaiI	YATR	3 cut(s)	15, 229, 255
FatI	CATG	2 cut(s)	13, 253
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	315, 374
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	315, 374
GluI	GCNGC	2 cut(s)	315, 374
Hin1II	CATG	2 cut(s)	17, 257
HinfI	GANTC	3 cut(s)	56, 92, 220
Hpy166II	GTNNAC	2 cut(s)	268, 411
Hpy188III	TCNNGA	3 cut(s)	96, 125, 196
Hpy8I	GTNNAC	2 cut(s)	268, 411
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	187, 337
HpyCH4IV	ACGT	2 cut(s)	116, 397
HpyCH4V	TGCA	2 cut(s)	282, 373
HpyF3I	CTNAG	2 cut(s)	207, 216
HpySE526I	ACGT	2 cut(s)	116, 397
Hsp92II	CATG	2 cut(s)	17, 257
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	2 cut(s)	17, 386
LpnPI	CCDG	8 cut(s)	109, 110, 181, 219, 256, 261, 324, 342
Lsp1109I	GCAGC	2 cut(s)	326, 385
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	2 cut(s)	116, 397
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	152, 215
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	3 cut(s)	162, 175, 306
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	92, 103, 376
NcoI	CCATGG	1 cut(s)	13
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	17, 257
PfeI	GAWTC	3 cut(s)	56, 92, 220
PkrI	GCNGC	2 cut(s)	316, 375
PstI	CTGCAG	1 cut(s)	375
SatI	GCNGC	2 cut(s)	315, 374
Sau3AI	GATC	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	5 cut(s)	22, 119, 217, 250, 400
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	168, 371
Sse9I	AATT	3 cut(s)	162, 175, 306
SsiI	CCGC	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	187, 337
TaiI	ACGT	2 cut(s)	119, 400
TasI	AATT	3 cut(s)	162, 175, 306
TfiI	GAWTC	3 cut(s)	56, 92, 220
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	2 cut(s)	314, 373
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	275
XapI	RAATTY	2 cut(s)	175, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.