Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

2792881 .. 2797956

Gene Structure 5076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG024000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGACGCCGGTGACGTTGGGCAAGGGGATCGCATTATCGGCGCAGCCGTCTTCCACCATGTGCTTGATGGTCTGCGATTCAAGGGCAACCGCCTCTCTAATCTCGAATTTATGTCCGTCGAAGCTGGTCAGGGCAGAATCATCAAACTCCCAAAATAAAAATAGCAGTAATGAATCCAGAGGAACTAAAGAGGAAACGTCGTCTCTAGAAGGGTTCTACGAAGAACTCCCTATCACAAAAAAAATTGCTGTAGTGAATTTAGTAAATGTTTCTATCAGGAAGTGCCCTGAGACAGCTAAGAATCTTCTATATTTGGAAACAGATTTACCTGATCATGTTGTTGTTGTTCACTGGGGAGTTTGCAAAGATGATGCTAAAAGATGGGAAATTCCAGCAGCCCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAAGGCTTTGCGAACCCGATTGCAGACAGGGTGTGGCATTGAATTTTTCAACTGGTTGCAGTCCAGCTTTGATAGTACTTATTTACATCAACATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

176

Amino Acids

19.53

Weight (kDa)

6.95

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	78 - 153	1e-20	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	90, 407
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	4 cut(s)	106, 256, 387, 473
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	508
AgsI	TTSAA	4 cut(s)	81, 427, 473, 481
AluBI	AGCT	3 cut(s)	124, 296, 498
AluI	AGCT	3 cut(s)	124, 296, 498
Alw26I	GTCTC	2 cut(s)	207, 284
AlwI	GGATC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	43, 395
ApoI	RAATTY	4 cut(s)	106, 256, 387, 473
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	55, 407
BccI	CCATC	2 cut(s)	61, 375
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	207, 284
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	44, 396
BlsI	GCNGC	2 cut(s)	45, 397
BmcAI	AGTACT	1 cut(s)	508
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	356, 488
BseGI	GGATG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	356, 488
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	55, 407
BsiSI	CCGG	1 cut(s)	8
BsmAI	GTCTC	2 cut(s)	207, 284
BsmBI	CGTCTC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	27, 331
BspACI	CCGC	2 cut(s)	90, 407
BspCNI	CTCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	356, 488
BssAI	RCCGGY	1 cut(s)	7
BssMI	GATC	2 cut(s)	27, 331
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	418
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	288, 297
BstF5I	GGATG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	30, 334
BstMAI	GTCTC	2 cut(s)	207, 284
BstMBI	GATC	2 cut(s)	27, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	55, 407
BstV2I	GAAGAC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	7
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	507
CviAII	CATG	2 cut(s)	58, 335
CviJI	RGCY	6 cut(s)	46, 124, 296, 398, 437, 498
CviKI_1	RGCY	6 cut(s)	46, 124, 296, 398, 437, 498
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	2 cut(s)	288, 297
DpnI	GATC	2 cut(s)	29, 333
DpnII	GATC	2 cut(s)	27, 331
DraIII	CACNNNGTG	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	2 cut(s)	61, 338
FaiI	YATR	4 cut(s)	59, 112, 310, 336
FatI	CATG	2 cut(s)	57, 334
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	44, 396
FokI	GGATG	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	44, 396
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	44, 396
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	61, 338
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	4 cut(s)	77, 137, 173, 301
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188III	TCNNGA	4 cut(s)	103, 177, 206, 277
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	2 cut(s)	121, 202
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	2 cut(s)	14, 197
HpyCH4V	TGCA	3 cut(s)	363, 454, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	288, 297
HpySE526I	ACGT	2 cut(s)	14, 197
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	61, 338
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	27, 331
Lsp1109I	GCAGC	2 cut(s)	55, 407
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	14, 197
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	29, 333
MboI	GATC	2 cut(s)	27, 331
MboII	GAAGA	3 cut(s)	42, 233, 296
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	5 cut(s)	106, 243, 256, 387, 473
MnlI	CCTC	3 cut(s)	103, 173, 184
MseI	TTAA	1 cut(s)	529
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	2 cut(s)	27, 331
NlaIII	CATG	2 cut(s)	61, 338
NmuCI	GTSAC	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 44
PfeI	GAWTC	4 cut(s)	77, 137, 173, 301
PkrI	GCNGC	2 cut(s)	45, 397
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	529
SatI	GCNGC	2 cut(s)	44, 396
Sau3AI	GATC	2 cut(s)	27, 331
ScaI	AGTACT	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	6 cut(s)	17, 126, 200, 298, 331, 500
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	249
SgrAI	CRCCGGYG	1 cut(s)	7
Sse9I	AATT	5 cut(s)	106, 243, 256, 387, 473
SsiI	CCGC	2 cut(s)	90, 407
SspMI	CTAG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	2 cut(s)	17, 200
TaqI	TCGA	2 cut(s)	104, 119
TasI	AATT	5 cut(s)	106, 243, 256, 387, 473
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	4 cut(s)	77, 137, 173, 301
Tru1I	TTAA	1 cut(s)	529
Tru9I	TTAA	1 cut(s)	529
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	43, 395
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	356
XapI	RAATTY	4 cut(s)	106, 256, 387, 473
XbaI	TCTAGA	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.