Rroxscaffold_7G00169140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000937
Physical Location & Seq
Forward (+)
9835841 .. 9840692
4852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169140.1

Sequence Viewer

Length: 420 bp
ATGGTTGGGTTTGTACAATGCGAACTGACTTATTTAGAATTTATTATGATATATTTGTTAAGCATTTATTTAGAACAGCTATATTATAAACCAGGTAATGTGGTCTACGGGTACCAGGGAATCTCACTGTTTTTGCTTCTTTCATTGGTCAATCTGACCAGACTCTACGAAAGTTTGGCGTTTAATTTTTCCAGTGGTTTCAGTTCAGTAATGGCAGCAAAGAGTAGAAAAGTAAAAATGAGGAGAGTTTCACGAGATGATGATGCAGAACATCAGAATACTCGGGAACAGACAGAGAAAATACCTAATGATCAAGCTTTCACTGCTGTTTCTCATATGGACACTGATTGTGAAACTATATCAATAAAGCGAAGACAGGATTGTCAAAGAAGATCGAAAAGATTGAAAGGGGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.11

Weight (kDa)

9.01

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AasI GACNNNNNNGTC 1 cut(s) 381
Acc65I GGTACC 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 38
AfaI GTAC 2 cut(s) 15, 113
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 2 cut(s) 91, 114
AluBI AGCT 2 cut(s) 79, 317
AluI AGCT 2 cut(s) 79, 317
Ama87I CYCGRG 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 38
Asp718I GGTACC 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 282
BanI GGYRCC 1 cut(s) 111
BauI CACGAG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 227
BciT130I CCWGG 2 cut(s) 93, 116
BclI TGATCA 1 cut(s) 310
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 93, 116
BmeT110I CYCGRG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 93, 116
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 192
BseBI CCWGG 2 cut(s) 93, 116
BseDI CCNNGG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 256
BseXI GCAGC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 282
BsoBI CYCGRG 1 cut(s) 282
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 2 cut(s) 310, 392
BspLI GGNNCC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 111
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 2 cut(s) 310, 392
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 93, 116
Bst4CI ACNGT 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 417
BstKTI GATC 2 cut(s) 313, 395
BstMBI GATC 2 cut(s) 310, 392
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 2 cut(s) 93, 116
BstSCI CCNGG 2 cut(s) 91, 114
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 379
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 4 cut(s) 125, 199, 321, 342
CsiI ACCWGGT 1 cut(s) 91
Csp6I GTAC 2 cut(s) 14, 112
CviJI RGCY 3 cut(s) 79, 317, 413
CviKI_1 RGCY 3 cut(s) 79, 317, 413
CviQI GTAC 2 cut(s) 14, 112
DdeI CTNAG 1 cut(s) 417
DpnI GATC 2 cut(s) 312, 394
DpnII GATC 2 cut(s) 310, 392
DrdI GACNNNNNNGTC 1 cut(s) 381
DseDI GACNNNNNNGTC 1 cut(s) 381
Eco88I CYCGRG 1 cut(s) 282
EcoRII CCWGG 2 cut(s) 91, 114
FaiI YATR 7 cut(s) 47, 52, 82, 87, 336, 338, 359
FauNDI CATATG 1 cut(s) 336
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 2 cut(s) 120, 162
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 156, 276
Hpy188III TCNNGA 2 cut(s) 252, 284
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 417
KpnI GGTACC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 2 cut(s) 310, 392
LpnPI CCDG 7 cut(s) 78, 101, 105, 128, 172, 205, 362
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 253
MabI ACCWGGT 1 cut(s) 91
MalI GATC 2 cut(s) 312, 394
MboI GATC 2 cut(s) 310, 392
MboII GAAGA 2 cut(s) 384, 402
MluCI AATT 2 cut(s) 38, 184
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 1 cut(s) 234
MseI TTAA 2 cut(s) 59, 183
MspR9I CCNGG 2 cut(s) 93, 116
MvaI CCWGG 2 cut(s) 93, 116
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeI CATATG 1 cut(s) 336
NdeII GATC 2 cut(s) 310, 392
NlaIV GGNNCC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PsiI TTATAA 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 91, 114
PspGI CCWGG 2 cut(s) 91, 114
PspN4I GGNNCC 1 cut(s) 113
RsaI GTAC 2 cut(s) 15, 113
RsaNI GTAC 2 cut(s) 14, 112
SaqAI TTAA 2 cut(s) 59, 183
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 2 cut(s) 310, 392
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 2 cut(s) 93, 116
SetI ASST 4 cut(s) 81, 97, 307, 319
SexAI ACCWGGT 1 cut(s) 91
SfaNI GCATC 1 cut(s) 253
Sse9I AATT 2 cut(s) 38, 184
StyD4I CCNGG 2 cut(s) 91, 114
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 395
TasI AATT 2 cut(s) 38, 184
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 2 cut(s) 59, 183
Tru9I TTAA 2 cut(s) 59, 183
TscAI CASTG 4 cut(s) 132, 199, 328, 349
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 4 cut(s) 132, 199, 328, 349
XapI RAATTY 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.