Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

49921014 .. 49921713

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG270800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCATGTGATCAAAGGTTCATGCAAAAGGAGGGAGCAAATGGACGGCAATGACTTCTACATTCCCCTTTCAAGCGCAAATAACTCACCTGCTGCAACAAAGGAGGATCAATCTGAAGGTGCTGATGTAGATGAGGGAAGTGCAGAAGAAATAGATGAAAGTTCTTTTACTGAATATGCCAATGGAATAATAAATGAAATAAGGACCTTGGTGAGTGGCATTTCCTCTGAGAAGAGTCGAAAGACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCAAGAAATAGAAAAATTGGCTGCTGAAGCCTATAGTATCTTCAGAAGCACTGTTCCCACATTTACTAAGCTATTTCAGAATCTGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

122

Amino Acids

13.53

Weight (kDa)

4.86

Isoelectric Point (pI)

69.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	114
AcuI	CTGAAG	3 cut(s)	135, 301, 321
AgsI	TTSAA	2 cut(s)	72, 278
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
AlwI	GGATC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	92, 296
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	78, 223
AvaII	GGWCC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	79, 283
BceAI	ACGGC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	93, 297
BlsI	GCNGC	2 cut(s)	94, 298
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	79, 283
BsgI	GTGCAG	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	9, 106
BspCNI	CTCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	9, 106
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	228, 342
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	2 cut(s)	12, 109
BstMBI	GATC	2 cut(s)	9, 106
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	79, 283
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	358
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	204
CviAII	CATG	2 cut(s)	5, 21
CviJI	RGCY	3 cut(s)	296, 305, 346
CviKI_1	RGCY	3 cut(s)	296, 305, 346
DdeI	CTNAG	2 cut(s)	228, 342
DpnI	GATC	2 cut(s)	11, 108
DpnII	GATC	2 cut(s)	9, 106
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	3 cut(s)	135, 301, 321
EcoO109I	RGGNCCY	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	8, 24
FaiI	YATR	4 cut(s)	6, 22, 177, 309
FatI	CATG	2 cut(s)	4, 20
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	93, 297
Fsp4HI	GCNGC	2 cut(s)	93, 297
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	2 cut(s)	93, 297
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	8, 24
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	235, 355
HphI	GGTGA	2 cut(s)	78, 223
Hpy188I	TCNGA	5 cut(s)	115, 229, 320, 354, 360
Hpy188III	TCNNGA	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	4 cut(s)	4, 24, 95, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	228, 342
Hsp92II	CATG	2 cut(s)	8, 24
HspAI	GCGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	9, 106
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	1 cut(s)	102
Lsp1109I	GCAGC	2 cut(s)	79, 283
MalI	GATC	2 cut(s)	11, 108
MboI	GATC	2 cut(s)	9, 106
MboII	GAAGA	4 cut(s)	158, 244, 266, 307
MluCI	AATT	2 cut(s)	290, 364
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	24, 97, 127, 235
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	2 cut(s)	9, 106
NlaIII	CATG	2 cut(s)	8, 24
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaqCI	CACCTGC	1 cut(s)	97
PctI	GAATGC	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	94, 298
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PpuMI	RGGWCCY	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	204
PspPPI	RGGWCCY	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	358
SatI	GCNGC	2 cut(s)	93, 297
Sau3AI	GATC	2 cut(s)	9, 106
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	244
SetI	ASST	5 cut(s)	19, 91, 121, 209, 348
SfcI	CTRYAG	1 cut(s)	307
SgeI	CNNG	7 cut(s)	17, 33, 84, 101, 220, 275, 290
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	290, 364
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	290, 364
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	2 cut(s)	92, 296
TspDTI	ATGAA	3 cut(s)	9, 171, 210
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	204
XceI	RCATGY	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.