Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

58759406 .. 58761760

Gene Structure 2355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G030800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGCAGCTTAGAAGGAGTTTTGGGGAAGTTATCCAACTTATTTTACAAGGCAGAATCATCAAACTCCCAAAATAAAAATAGCAGTAATGAATCCAGAGGAACTAAAGAGGAAACAAGGTCTCTAGAAGGGTTCTACGAAGAACTCCTTATCGCAAAAAAAATTGCTGTAGTGAATTCAGTAACTGTTTCTGTCAGGAAGTGCCCTGAGACAGCTAAGAATCTTCTATATTTGGAAACAGATTTACCTGATCATGTTGTTGTTGTTCACTGGGGAGTTTGCAAAGATGATGCTAAAAGATGGGAAATTCCAGCAGCCCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAAGGCTTCGCGAACTCGACTGCAGCTAAGTGAAAGTACATGGTTGAAATGTAAGGGCAATGACTTCTACATTCCCCTTTCAAGTGCAAATAACTCACCTGCTGCAGCAAAGGAGGATCAATCTGAAGGTGCTGATGTAGATGAGGGAAGTGCAGAAGAAATAGATGAAAGTTCTTTTACTGAATATGCCAATGGAATAATAAATGAAATAAGGACCCTGGTCAGTGGCATTTCCTCTGAGAAGAGTCGAAAGACAAAATTTGAAGAAGCACAAGAAAGCATTCTTCAAGAAATAGAAAAATTGGCTGCTGAAGCCTATAGTATCTTCAGAAGCACTGTTCCCACATTTACTGAGGAAGCTATTTCAGAATCTGAAGAATTACCACCCTCTGAAAATAACCTCAGGGACAGGCACGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

257

Amino Acids

28.49

Weight (kDa)

4.85

Isoelectric Point (pI)

62.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	53 - 129	1.1e-20	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AccII	CGCG	1 cut(s)	361
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	3 cut(s)	175, 306, 608
AcuI	CTGAAG	4 cut(s)	495, 661, 681, 744
AfaI	GTAC	1 cut(s)	388
AgsI	TTSAA	5 cut(s)	346, 397, 432, 614, 638
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	4 cut(s)	9, 215, 376, 710
AluI	AGCT	4 cut(s)	9, 215, 376, 710
Alw26I	GTCTC	2 cut(s)	126, 203
AlwI	GGATC	1 cut(s)	474
AlwNI	CAGNNNCTG	2 cut(s)	185, 722
ApeKI	GCWGC	6 cut(s)	6, 314, 373, 452, 455, 656
ApoI	RAATTY	3 cut(s)	175, 306, 608
Asp700I	GAANNNNTTC	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	564
AxyI	CCTNAGG	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	206
BbvI	GCAGC	6 cut(s)	18, 326, 385, 439, 467, 643
BccI	CCATC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	569
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	126, 203
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	4 cut(s)	168, 371, 453, 667
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	6 cut(s)	7, 315, 374, 453, 456, 657
BlsI	GCNGC	6 cut(s)	8, 316, 375, 454, 457, 658
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	566
BmrFI	CCNGG	1 cut(s)	569
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	280
BoxI	GACNNNNGTC	1 cut(s)	569
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	567
Bse1I	ACTGG	1 cut(s)	275
Bse21I	CCTNAGG	1 cut(s)	752
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	4 cut(s)	198, 579, 693, 766
BseNI	ACTGG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	6 cut(s)	18, 326, 385, 439, 467, 643
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	770
BsmAI	GTCTC	2 cut(s)	126, 203
BsmFI	GGGAC	1 cut(s)	770
BsmI	GAATGC	1 cut(s)	630
Bso31I	GGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	250, 466
Bsp68I	TCGCGA	1 cut(s)	361
BspACI	CCGC	1 cut(s)	326
BspCNI	CTCAG	4 cut(s)	199, 580, 694, 765
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	566
BspMAI	CTGCAG	2 cut(s)	375, 457
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	2 cut(s)	250, 466
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	3 cut(s)	187, 337, 688
Bst6I	CTCTTC	1 cut(s)	587
BstDEI	CTNAG	7 cut(s)	10, 207, 216, 377, 588, 702, 752
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	253, 469
BstMAI	GTCTC	2 cut(s)	126, 203
BstMBI	GATC	2 cut(s)	250, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstNI	CCWGG	1 cut(s)	569
BstPAI	GACNNNNGTC	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	4 cut(s)	168, 371, 453, 667
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	6 cut(s)	18, 326, 385, 439, 467, 643
Bsu36I	CCTNAGG	1 cut(s)	752
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	3 cut(s)	268, 580, 684
BtuMI	TCGCGA	1 cut(s)	361
BveI	ACCTGC	1 cut(s)	457
CaiI	CAGNNNCTG	2 cut(s)	185, 722
Cfr13I	GGNCC	1 cut(s)	564
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	2 cut(s)	254, 390
CviJI	RGCY	8 cut(s)	9, 215, 317, 356, 376, 656, 665, 710
CviKI_1	RGCY	8 cut(s)	9, 215, 317, 356, 376, 656, 665, 710
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	7 cut(s)	10, 207, 216, 377, 588, 702, 752
DpnI	GATC	2 cut(s)	252, 468
DpnII	GATC	2 cut(s)	250, 466
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
EciI	GGCGGA	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	564
Eco57I	CTGAAG	4 cut(s)	495, 661, 681, 744
Eco81I	CCTNAGG	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	564
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	567
FaeI	CATG	2 cut(s)	257, 393
FaiI	YATR	5 cut(s)	229, 255, 391, 537, 669
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	2 cut(s)	253, 389
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	6 cut(s)	7, 315, 374, 453, 456, 657
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	6 cut(s)	7, 315, 374, 453, 456, 657
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	6 cut(s)	7, 315, 374, 453, 456, 657
Hin1II	CATG	2 cut(s)	257, 393
HinfI	GANTC	5 cut(s)	56, 92, 220, 595, 719
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	6 cut(s)	475, 589, 680, 718, 724, 742
Hpy188III	TCNNGA	5 cut(s)	96, 125, 196, 360, 638
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	8, 122, 470
HpyCH4III	ACNGT	3 cut(s)	187, 337, 688
HpyCH4V	TGCA	5 cut(s)	282, 373, 437, 455, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpyF3I	CTNAG	7 cut(s)	10, 207, 216, 377, 588, 702, 752
Hsp92II	CATG	2 cut(s)	257, 393
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	250, 466
Lsp1109I	GCAGC	6 cut(s)	18, 326, 385, 439, 467, 643
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	252, 468
MboI	GATC	2 cut(s)	250, 466
MboII	GAAGA	8 cut(s)	152, 215, 518, 604, 626, 626, 667, 737
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	6 cut(s)	162, 175, 306, 608, 650, 728
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	92, 103, 457, 487, 595, 697, 748, 761
MroXI	GAANNNNTTC	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	569
Mva1269I	GAATGC	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	569
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	662
NdeII	GATC	2 cut(s)	250, 466
NlaIII	CATG	2 cut(s)	257, 393
NlaIV	GGNNCC	1 cut(s)	566
NruI	TCGCGA	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	457
PctI	GAATGC	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	4 cut(s)	56, 92, 220, 719
PkrI	GCNGC	6 cut(s)	8, 316, 375, 454, 457, 658
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
PpuMI	RGGWCCY	1 cut(s)	564
PshAI	GACNNNNGTC	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	566
PspPI	GGNCC	1 cut(s)	564
PspPPI	RGGWCCY	1 cut(s)	564
PstI	CTGCAG	2 cut(s)	375, 457
PstNI	CAGNNNCTG	2 cut(s)	185, 722
RruI	TCGCGA	1 cut(s)	361
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SatI	GCNGC	6 cut(s)	7, 315, 374, 453, 456, 657
Sau3AI	GATC	2 cut(s)	250, 466
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	9 cut(s)	11, 122, 217, 250, 378, 451, 481, 712, 753
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	4 cut(s)	168, 371, 453, 667
SinI	GGWCC	1 cut(s)	564
Sse9I	AATT	6 cut(s)	162, 175, 306, 608, 650, 728
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	3 cut(s)	187, 337, 688
TaqI	TCGA	2 cut(s)	367, 598
TasI	AATT	6 cut(s)	162, 175, 306, 608, 650, 728
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	4 cut(s)	56, 92, 220, 719
TscAI	CASTG	3 cut(s)	275, 580, 691
TseI	GCWGC	6 cut(s)	6, 314, 373, 452, 455, 656
TspDTI	ATGAA	3 cut(s)	105, 531, 570
TspRI	CASTG	3 cut(s)	275, 580, 691
VpaK11BI	GGWCC	1 cut(s)	564
XapI	RAATTY	3 cut(s)	175, 306, 608
XbaI	TCTAGA	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.