Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

24220227 .. 24222168

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG251800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAGCTCAAAGATAAAGCTGCTGAATTGTCTTCACTAGGTTTCACTGTGATTTGGTTACCACCCCCTACAGATTCTGTGTCACCTAAAGGGTACATGCCGACGGATTTGTATAATCTGAACTCCAGACAGGGTGTGGCATTGAATTTTTCAACTGGTTTCAGTTCAGGTCTCAGTTATGCTCCATTCGAGTCATCGTCGCAGAAATACTTGACGGACAATGGGAGTGTCTTTATGACCAAGGTGTTCTTCAAAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

87

Amino Acids

9.61

Weight (kDa)

6.1

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	145, 153, 253
AjuI	GAANNNNNNNTTGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	7, 20
AluI	AGCT	2 cut(s)	7, 20
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	160
BseCI	ATCGAT	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	7
BshVI	ATCGAT	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	9
BsmAI	GTCTC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	186
BspDI	ATCGAT	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	173
BstEII	GGTNACC	1 cut(s)	57
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	259
BsuTUI	ATCGAT	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	77
ClaI	ATCGAT	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	2 cut(s)	7, 20
CviKI_1	RGCY	2 cut(s)	7, 20
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	7
Eco91I	GGTNACC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	98, 114, 180, 236
FalI	AAGNNNNNCTT	1 cut(s)	233
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	109
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	2 cut(s)	74, 191
HphI	GGTGA	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	126
Hpy99I	CGWCG	2 cut(s)	106, 202
HpyCH4III	ACNGT	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	4, 187
LpnPI	CCDG	4 cut(s)	116, 139, 141, 153
Lsp1109I	GCAGC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	57, 81
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	24, 241
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	26, 145
MlyI	GAGTC	1 cut(s)	200
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	81
NspI	RCATGY	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	9
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	6 cut(s)	9, 22, 43, 88, 172, 246
SfcI	CTRYAG	1 cut(s)	69
SgeI	CNNG	9 cut(s)	50, 109, 138, 143, 168, 180, 202, 223, 253
Sse9I	AATT	2 cut(s)	26, 145
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	189, 259
TasI	AATT	2 cut(s)	26, 145
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	81
TspGWI	ACGGA	2 cut(s)	119, 230
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.