Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000829.1

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

58315 .. 60692

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000829.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggtccttttggttctttgctgcggaataattgacccaatttcaggtggagagattcctcttgagattggaaagatgggcagtttagaaggagttttggggaagttatccaacttattttacaaggcagaatcatcaaactcccaaaataaaaatagcagtaatgaatccagaggaactaaagaggaaacaaggtctctagaagggttctacgaagaactccctatcgcaaaaaaaattgctgtagtgaattcagtaactgtttctgttaggaagtgccctgagacagctaagaatcttctatatttggaaacagatttacctgatcatgttgttgttcactggggagttcgcaaagatgatgctaaaagatgggaaattccagcagccccacatccgccagaaacagtagttttcaaggataaggcttcgcgaactcgactgcagcaaaaggagggagtaaatggacgttgggcattgtttacttgggaagaaggaactgcaggatttctttttgttttcaagctaagtgaaagtacatggttgaaatgtaagggcaatgacttctacattcccctttcaagcgcaaataactcacctgctgcagcaaaggaggatcaatctgaaggtgctgatgtagatgagggaagtgcagaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

220

Amino Acids

24.21

Weight (kDa)

5.19

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	607
Acc36I	ACCTGC	1 cut(s)	607
AccII	CGCG	1 cut(s)	433
AciI	CCGC	2 cut(s)	24, 398
AclWI	GGATC	1 cut(s)	624
AcsI	RAATTY	2 cut(s)	250, 378
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	418, 523, 547, 582
AluBI	AGCT	2 cut(s)	290, 526
AluI	AGCT	2 cut(s)	290, 526
Alw26I	GTCTC	2 cut(s)	201, 278
AlwI	GGATC	1 cut(s)	624
AlwNI	CAGNNNCTG	1 cut(s)	260
ApeKI	GCWGC	5 cut(s)	21, 386, 445, 602, 605
ApoI	RAATTY	2 cut(s)	250, 378
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	281
BbvI	GCAGC	5 cut(s)	8, 398, 457, 589, 617
BccI	CCATC	2 cut(s)	70, 366
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	201, 278
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	4 cut(s)	243, 443, 501, 603
BfuAI	ACCTGC	1 cut(s)	607
BisI	GCNGC	5 cut(s)	22, 387, 446, 603, 606
BlsI	GCNGC	5 cut(s)	23, 388, 447, 604, 607
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	565
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	5 cut(s)	8, 398, 457, 589, 617
Bsh1236I	CGCG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	201, 278
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	325, 616
Bsp68I	TCGCGA	1 cut(s)	433
BspACI	CCGC	2 cut(s)	24, 398
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	433
BspMAI	CTGCAG	3 cut(s)	447, 505, 607
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	624
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	325, 616
Bst4CI	ACNGT	2 cut(s)	262, 409
BstDEI	CTNAG	3 cut(s)	282, 291, 527
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	2 cut(s)	328, 619
BstMAI	GTCTC	2 cut(s)	201, 278
BstMBI	GATC	2 cut(s)	325, 616
BstSFI	CTRYAG	4 cut(s)	243, 443, 501, 603
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	5 cut(s)	8, 398, 457, 589, 617
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	340
BtuMI	TCGCGA	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	607
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	2 cut(s)	329, 540
CviJI	RGCY	4 cut(s)	290, 389, 428, 526
CviKI_1	RGCY	4 cut(s)	290, 389, 428, 526
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	3 cut(s)	282, 291, 527
DpnI	GATC	2 cut(s)	327, 618
DpnII	GATC	2 cut(s)	325, 616
EciI	GGCGGA	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	250
FaeI	CATG	2 cut(s)	332, 543
FaiI	YATR	3 cut(s)	304, 330, 541
FatI	CATG	2 cut(s)	328, 539
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	5 cut(s)	22, 387, 446, 603, 606
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	5 cut(s)	22, 387, 446, 603, 606
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	5 cut(s)	22, 387, 446, 603, 606
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	2 cut(s)	332, 543
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HinfI	GANTC	4 cut(s)	55, 131, 167, 295
HphI	GGTGA	1 cut(s)	588
Hpy166II	GTNNAC	2 cut(s)	340, 483
Hpy188I	TCNGA	1 cut(s)	625
Hpy188III	TCNNGA	4 cut(s)	62, 171, 200, 432
Hpy8I	GTNNAC	2 cut(s)	340, 483
HpyAV	CCTTC	4 cut(s)	83, 197, 488, 620
HpyCH4III	ACNGT	2 cut(s)	262, 409
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	4 cut(s)	445, 503, 605, 653
HpyF3I	CTNAG	3 cut(s)	282, 291, 527
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	2 cut(s)	332, 543
HspAI	GCGC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	325, 616
LpnPI	CCDG	9 cut(s)	30, 184, 294, 328, 336, 396, 414, 489, 612
Lsp1109I	GCAGC	5 cut(s)	8, 398, 457, 589, 617
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	327, 618
MboI	GATC	2 cut(s)	325, 616
MboII	GAAGA	3 cut(s)	227, 290, 503
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	5 cut(s)	30, 39, 237, 250, 378
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	6 cut(s)	69, 167, 178, 448, 607, 637
MvnI	CGCG	1 cut(s)	433
NdeII	GATC	2 cut(s)	325, 616
NlaIII	CATG	2 cut(s)	332, 543
NruI	TCGCGA	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	607
PfeI	GAWTC	4 cut(s)	55, 131, 167, 295
PkrI	GCNGC	5 cut(s)	23, 388, 447, 604, 607
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	3 cut(s)	447, 505, 607
PstNI	CAGNNNCTG	1 cut(s)	260
RruI	TCGCGA	1 cut(s)	433
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
SatI	GCNGC	5 cut(s)	22, 387, 446, 603, 606
Sau3AI	GATC	2 cut(s)	325, 616
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	8 cut(s)	49, 197, 292, 325, 472, 528, 601, 631
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	4 cut(s)	243, 443, 501, 603
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	5 cut(s)	30, 39, 237, 250, 378
SsiI	CCGC	2 cut(s)	24, 398
SspMI	CTAG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	262, 409
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	439
TasI	AATT	5 cut(s)	30, 39, 237, 250, 378
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	4 cut(s)	55, 131, 167, 295
TscAI	CASTG	1 cut(s)	347
TseI	GCWGC	5 cut(s)	21, 386, 445, 602, 605
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	250, 378
XbaI	TCTAGA	1 cut(s)	199
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.