Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

58217632 .. 58221076

Gene Structure 3445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG346400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAATCCAGAGGAACTAAAGAGGAAACAAGTAACTGTTTCTGTCAGGAAGTGCCCTGAGACAGCTAAGAATCTTCTATATTTGGAAACAGATTTACCTGATCATGTTGTTGTTGTTCACTGGGGAGTTTGCAAAGATGATGCTAAAAGATGGGAAATTCCAGCAGCCCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAAGGCTTCGCGAACTCGACTGCAGGGCAATGACTTCTACATTCCCCTTTCAAGTGCAAATAACTCACCTGCTGCAGCAAAGGAGGATCAATCTGAAGGTGCTGATGTAGATGAGGGAAGTGCAGAAGAAATAGATGAAAGTTCTTTTACTGAATATGCCAATGGAATAATAAATGAAATAAGGACCCTGACAGGTGTGGCGTTGAATTTTTCAACTGGTTTCAGTTCAGGTCTCAGTTATGCTCCATTCGAGTCATCGTCTCAGAAATACTTGACGGACAATGGGAGTGTCTTTATGACCAAGTTATGTAAATCTCTTGGTTTCTTGAGTAAATTCGTCCATGATGCTCACAGGTGTTCGTTCTTCAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

191

Amino Acids

21.16

Weight (kDa)

5.27

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	7 - 77	1.5e-20	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	277
AccII	CGCG	1 cut(s)	211
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	3 cut(s)	156, 406, 533
AcuI	CTGAAG	1 cut(s)	315
AgsI	TTSAA	5 cut(s)	196, 252, 406, 414, 568
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	3 cut(s)	53, 437, 465
AlwI	GGATC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	164, 272, 275
ApoI	RAATTY	3 cut(s)	156, 406, 533
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	384
BaeGI	GKGCMC	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	176, 259, 287
BccI	CCATC	1 cut(s)	144
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	3 cut(s)	53, 437, 465
BfmI	CTRYAG	2 cut(s)	221, 273
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	3 cut(s)	165, 273, 276
BlsI	GCNGC	3 cut(s)	166, 274, 277
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	130, 535
BmuI	ACTGGG	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	125, 421
Bse3DI	GCAATG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	3 cut(s)	48, 448, 476
BseNI	ACTGG	2 cut(s)	125, 421
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	176, 259, 287
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	211
BsmAI	GTCTC	3 cut(s)	53, 437, 465
BsmBI	CGTCTC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	100, 286
Bsp68I	TCGCGA	1 cut(s)	211
BspACI	CCGC	1 cut(s)	176
BspCNI	CTCAG	3 cut(s)	49, 447, 475
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	386
BspMAI	CTGCAG	2 cut(s)	225, 277
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	125, 421
BssMI	GATC	2 cut(s)	100, 286
Bst4CI	ACNGT	2 cut(s)	37, 187
BstDEI	CTNAG	4 cut(s)	57, 66, 434, 462
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	103, 289
BstMAI	GTCTC	3 cut(s)	53, 437, 465
BstMBI	GATC	2 cut(s)	100, 286
BstSFI	CTRYAG	2 cut(s)	221, 273
BstSLI	GKGCMC	1 cut(s)	56
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	3 cut(s)	176, 259, 287
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	118
BtuMI	TCGCGA	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	384
CviAII	CATG	2 cut(s)	104, 542
CviJI	RGCY	3 cut(s)	65, 167, 206
CviKI_1	RGCY	3 cut(s)	65, 167, 206
DdeI	CTNAG	4 cut(s)	57, 66, 434, 462
DpnI	GATC	2 cut(s)	102, 288
DpnII	GATC	2 cut(s)	100, 286
EciI	GGCGGA	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	2 cut(s)	107, 545
FaiI	YATR	7 cut(s)	79, 105, 357, 441, 497, 508, 543
FatI	CATG	2 cut(s)	103, 541
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	165, 273, 276
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	165, 273, 276
GluI	GCNGC	3 cut(s)	165, 273, 276
Hin1II	CATG	2 cut(s)	107, 545
HinfI	GANTC	3 cut(s)	4, 70, 452
HphI	GGTGA	1 cut(s)	258
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	295, 465
Hpy188III	TCNNGA	4 cut(s)	8, 46, 210, 526
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	37, 187
HpyCH4V	TGCA	5 cut(s)	132, 223, 257, 275, 323
HpyF3I	CTNAG	4 cut(s)	57, 66, 434, 462
Hsp92II	CATG	2 cut(s)	107, 545
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	100, 286
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	3 cut(s)	176, 259, 287
LweI	GCATC	2 cut(s)	130, 535
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	102, 288
MboI	GATC	2 cut(s)	100, 286
MboII	GAAGA	3 cut(s)	65, 338, 556
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	3 cut(s)	156, 406, 533
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	4 cut(s)	4, 15, 277, 307
MvnI	CGCG	1 cut(s)	211
NdeII	GATC	2 cut(s)	100, 286
NlaIII	CATG	2 cut(s)	107, 545
NlaIV	GGNNCC	1 cut(s)	386
NruI	TCGCGA	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	4, 70
PkrI	GCNGC	3 cut(s)	166, 274, 277
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	384
PspPPI	RGGWCCY	1 cut(s)	384
PstI	CTGCAG	2 cut(s)	225, 277
RruI	TCGCGA	1 cut(s)	211
SatI	GCNGC	3 cut(s)	165, 273, 276
Sau3AI	GATC	2 cut(s)	100, 286
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	7 cut(s)	67, 100, 271, 301, 397, 433, 557
SfaNI	GCATC	2 cut(s)	130, 535
SfcI	CTRYAG	2 cut(s)	221, 273
SinI	GGWCC	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	3 cut(s)	156, 406, 533
SsiI	CCGC	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	37, 187
TaqI	TCGA	2 cut(s)	217, 450
TasI	AATT	3 cut(s)	156, 406, 533
TfiI	GAWTC	2 cut(s)	4, 70
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	3 cut(s)	164, 272, 275
TspDTI	ATGAA	3 cut(s)	17, 351, 390
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	384
XapI	RAATTY	3 cut(s)	156, 406, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.