Rw5G046240

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004839
Physical Location & Seq
Forward (+)
80336145 .. 80338160
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046240.1

Sequence Viewer

Length: 381 bp
ATGGCTTCCCTCTTGGCTTTTGCCATGGCGATTTTCGCCATCATCCTGAATGCTTCTACTGCAAATGGGGATATCACATTCCAAGCAGCCCTGCTAGATTTGTTGCCATGTGAGCCTTTCTTGGTGAGCTCTGCCCCGCCAACTCCTAGTGTTCCTTATTGTTCAGCTGTTCAAAACCTGAATGCTCAAGCTACCACCACCAAGACTCGTAGGAACCTTTGTGAATGCTTTAAGAAGGCTGCTGTTGGCATTGCAATTGACCCTATGAAACTTAAGCAGCTTCCTCAGTTTTGCAAGGTCTCCCTTCCAGTCACTCTTGACCCAAGCATCGATTGTAGCAACCAAAATCGAATCGGGCAAGTGATGCCTAGCGCCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

126

Amino Acids

13.38

Weight (kDa)

8.26

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 31 - 112 8.4e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 137
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 4 cut(s) 129, 167, 191, 280
AluI AGCT 4 cut(s) 129, 167, 191, 280
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 304
ApeKI GCWGC 3 cut(s) 86, 239, 277
AspLEI GCGC 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 136
BanII GRGCYC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 3 cut(s) 98, 226, 289
BccI CCATC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 4 cut(s) 95, 147, 369, 379
BfoI RGCGCY 1 cut(s) 375
BfrI CTTAAG 1 cut(s) 272
BisI GCNGC 3 cut(s) 87, 240, 278
BlsI GCNGC 3 cut(s) 88, 241, 279
BmiI GGNNCC 1 cut(s) 215
BmsI GCATC 2 cut(s) 336, 354
BpuEI CTTGAG 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 98, 226, 289
BshVI ATCGAT 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 304
BsmI GAATGC 3 cut(s) 55, 187, 230
Bso31I GGTCTC 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 131
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 298
BspDI ATCGAT 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 24
BstAFI CTTAAG 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 42
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 35, 59, 112, 364
BstV1I GCAGC 3 cut(s) 98, 226, 289
Bsu15I ATCGAT 1 cut(s) 330
BsuTUI ATCGAT 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 42
CfoI GCGC 1 cut(s) 374
ClaI ATCGAT 1 cut(s) 330
CviAII CATG 2 cut(s) 25, 108
CviJI RGCY 9 cut(s) 5, 17, 89, 115, 129, 167, 191, 239, 280
CviKI_1 RGCY 9 cut(s) 5, 17, 89, 115, 129, 167, 191, 239, 280
DdeI CTNAG 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 304
Eco32I GATATC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 2 cut(s) 28, 111
FaiI YATR 3 cut(s) 26, 109, 266
FatI CATG 2 cut(s) 24, 107
FauI CCCGC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 87, 240, 278
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 87, 240, 278
FspBI CTAG 4 cut(s) 95, 147, 369, 379
GlaI GCGC 1 cut(s) 373
GluI GCNGC 3 cut(s) 87, 240, 278
HaeII RGCGCY 1 cut(s) 375
HhaI GCGC 1 cut(s) 374
Hin1II CATG 2 cut(s) 28, 111
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 2 cut(s) 205, 351
HphI GGTGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 46, 317
HpyAV CCTTC 2 cut(s) 229, 314
HpyCH4V TGCA 3 cut(s) 62, 254, 294
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 59, 112, 364
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 2 cut(s) 28, 111
HspAI GCGC 1 cut(s) 372
LpnPI CCDG 4 cut(s) 59, 104, 191, 321
Lsp1109I GCAGC 3 cut(s) 98, 226, 289
LweI GCATC 2 cut(s) 336, 354
MaeI CTAG 4 cut(s) 95, 147, 369, 379
MaeIII GTNAC 1 cut(s) 310
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 2 cut(s) 20, 294
MseI TTAA 2 cut(s) 231, 273
MspA1I CMGCKG 1 cut(s) 167
MspCI CTTAAG 1 cut(s) 272
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 3 cut(s) 55, 187, 230
MwoI GCNNNNNNNGC 4 cut(s) 35, 59, 112, 364
NcoI CCATGG 1 cut(s) 24
NlaIII CATG 2 cut(s) 28, 111
NlaIV GGNNCC 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 310
PctI GAATGC 3 cut(s) 55, 187, 230
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 3 cut(s) 88, 241, 279
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 231, 273
SatI GCNGC 3 cut(s) 87, 240, 278
SchI GAGTC 1 cut(s) 199
SduI GDGCHC 1 cut(s) 131
SetI ASST 7 cut(s) 131, 169, 180, 193, 219, 282, 300
SfaNI GCATC 2 cut(s) 336, 354
SmlI CTYRAG 2 cut(s) 186, 272
SmoI CTYRAG 2 cut(s) 186, 272
Sse9I AATT 1 cut(s) 255
SsiI CCGC 1 cut(s) 137
SspMI CTAG 4 cut(s) 95, 147, 369, 379
SstI GAGCTC 1 cut(s) 131
StyI CCWWGG 1 cut(s) 24
TaqI TCGA 2 cut(s) 330, 349
TasI AATT 1 cut(s) 255
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 2 cut(s) 231, 273
Tru9I TTAA 2 cut(s) 231, 273
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 3 cut(s) 86, 239, 277
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 281
Vha464I CTTAAG 1 cut(s) 272
XspI CTAG 4 cut(s) 95, 147, 369, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.