Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Forward (+)

619767 .. 621047

Gene Structure 1281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G013200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAGATGAAACTGATGGGTTGTTGGTCTCTGATAGTTTTTGGGTTGGTGGTTACGGTTTTGAACAATGCATGTCCTGCAAATGGGATCACATGCCAAGAGGCCCTAATGACTTTGATGCCCTGTGAGTCATACTTGGTGGGTTCTGGCCCAGGCACTCCTGCCGTTCCTTGTTGTGCTGGTGTCCAAACCCTTGTTTCTGAGGCTACCTCCACTGAAATCCGCAGGAGCCTCTGTGAATGCTTGAAAAAAGCTGCATCTGGGATGAAGATTGACCCAGGCAGACTTAAGGCCATCCCCGAATACTGCAAGGTCTCCATTCCTGTACCTCTTGACCCCGCCGTCGACTGCAGCAAAGTTCCTCTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

124

Amino Acids

12.98

Weight (kDa)

6.19

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	2 cut(s)	223, 339
AclWI	GGATC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	64, 247
AjnI	CCWGG	2 cut(s)	151, 277
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw26I	GTCTC	2 cut(s)	33, 319
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	3 cut(s)	102, 148, 291
ApeKI	GCWGC	2 cut(s)	254, 351
AspS9I	GGNCC	2 cut(s)	103, 149
BbvI	GCAGC	2 cut(s)	241, 363
BccI	CCATC	2 cut(s)	10, 302
BceAI	ACGGC	2 cut(s)	149, 326
BciT130I	CCWGG	2 cut(s)	153, 279
BcoDI	GTCTC	2 cut(s)	33, 319
BfmI	CTRYAG	1 cut(s)	349
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	2 cut(s)	255, 352
BlsI	GCNGC	2 cut(s)	256, 353
Bme1390I	CCNGG	2 cut(s)	153, 279
BmgT120I	GGNCC	2 cut(s)	103, 149
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	2 cut(s)	153, 279
BmsI	GCATC	2 cut(s)	108, 266
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BsaI	GGTCTC	2 cut(s)	33, 319
BsaJI	CCNNGG	2 cut(s)	151, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	153, 279
BseDI	CCNNGG	2 cut(s)	151, 277
BseGI	GGATG	2 cut(s)	270, 294
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	241, 363
BshFI	GGCC	3 cut(s)	104, 150, 293
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	33, 319
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	104, 150, 293
Bso31I	GGTCTC	2 cut(s)	33, 319
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	223, 339
BspANI	GGCC	3 cut(s)	104, 150, 293
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	353
BspPI	GGATC	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	287
BspTNI	GGTCTC	2 cut(s)	33, 319
BssECI	CCNNGG	2 cut(s)	151, 277
BssMI	GATC	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	153, 279
Bst4CI	ACNGT	1 cut(s)	58
BstAFI	CTTAAG	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	270, 294
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	2 cut(s)	33, 319
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	2 cut(s)	153, 279
BstNSI	RCATGY	2 cut(s)	75, 96
BstSCI	CCNGG	2 cut(s)	151, 277
BstSFI	CTRYAG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	241, 363
BsuRI	GGCC	3 cut(s)	104, 150, 293
BtsCI	GGATG	2 cut(s)	270, 294
BtsIMutI	CAGTG	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	103, 149
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	2 cut(s)	72, 93
CviJI	RGCY	6 cut(s)	104, 150, 206, 231, 254, 293
CviKI_1	RGCY	6 cut(s)	104, 150, 206, 231, 254, 293
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eco31I	GGTCTC	2 cut(s)	33, 319
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	151, 277
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	2 cut(s)	75, 96
FaiI	YATR	3 cut(s)	73, 94, 133
FatI	CATG	2 cut(s)	71, 92
FauI	CCCGC	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	255, 352
FokI	GGATG	2 cut(s)	277, 281
Fsp4HI	GCNGC	2 cut(s)	255, 352
GluI	GCNGC	2 cut(s)	255, 352
HaeIII	GGCC	3 cut(s)	104, 150, 293
Hin1II	CATG	2 cut(s)	75, 96
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	33, 202
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	71, 80, 257, 309, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	75, 96
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	228
Lsp1109I	GCAGC	2 cut(s)	241, 363
LweI	GCATC	2 cut(s)	108, 266
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	6 cut(s)	94, 196, 220, 242, 339, 372
Mph1103I	ATGCAT	1 cut(s)	73
MseI	TTAA	1 cut(s)	288
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	153, 279
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	2 cut(s)	153, 279
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	2 cut(s)	75, 96
NlaIV	GGNNCC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	2 cut(s)	75, 96
PctI	GAATGC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	256, 353
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	151, 277
PspGI	CCWGG	2 cut(s)	151, 277
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	2 cut(s)	103, 149
PstI	CTGCAG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	255, 352
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	2 cut(s)	103, 149
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	153, 279
SetI	ASST	4 cut(s)	212, 256, 315, 331
SfaNI	GCATC	2 cut(s)	108, 266
SfcI	CTRYAG	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SsiI	CCGC	2 cut(s)	223, 339
StyD4I	CCNGG	2 cut(s)	151, 277
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	2 cut(s)	254, 351
TspDTI	ATGAA	2 cut(s)	23, 281
TspRI	CASTG	1 cut(s)	220
Vha464I	CTTAAG	1 cut(s)	287
XceI	RCATGY	2 cut(s)	75, 96
XmiI	GTMKAC	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.