Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000580.1

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Forward (+)

513358 .. 513714

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000580.1_g000125.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggagaacaaagtggcttccctcttggctttcgcgttggcgatgactgccattgtccttaatgcttctcctccaaatggggatatcacatgccaaactgccttgcttgctttgatgccatgtaagccttacttggagagctctggcccgccaacccctagcgttttctgttgtaagggtgttcaaaatgttaccactcaggctaccactaccgagattcgcaggagcctctgcgaatgctttaagcaagctgctgctagcatgtcaattgatcctaaaaaacttaagcagcttcctcagtcctgccaagtctccattcctgttccgcttgaccccagcatcgactgtagcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

12.52

Weight (kDa)

8.13

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	149, 326
AclWI	GGATC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	141, 251, 292
AluI	AGCT	3 cut(s)	141, 251, 292
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	251, 254, 289
AspS9I	GGNCC	1 cut(s)	146
AsuNHI	GCTAGC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	238, 241, 301
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	159, 258
BfmI	CTRYAG	1 cut(s)	346
BfrI	CTTAAG	1 cut(s)	284
BisI	GCNGC	3 cut(s)	252, 255, 290
BlsI	GCNGC	3 cut(s)	253, 256, 291
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	227
BmsI	GCATC	2 cut(s)	105, 348
BmtI	GCTAGC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	2 cut(s)	212, 311
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	238, 241, 301
BseYI	CCCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	149, 326
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	211, 310
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	227
BspOI	GCTAGC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	284
BssMI	GATC	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	347
BstAFI	CTTAAG	1 cut(s)	284
BstC8I	GCNNGC	4 cut(s)	108, 149, 249, 259
BstDEI	CTNAG	2 cut(s)	198, 297
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 107, 124
BstNSI	RCATGY	2 cut(s)	93, 265
BstSFI	CTRYAG	1 cut(s)	346
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	238, 241, 301
BsuRI	GGCC	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	56
Cac8I	GCNNGC	4 cut(s)	108, 149, 249, 259
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	3 cut(s)	90, 120, 262
CviJI	RGCY	9 cut(s)	17, 29, 127, 141, 147, 203, 228, 251, 292
CviKI_1	RGCY	9 cut(s)	17, 29, 127, 141, 147, 203, 228, 251, 292
DdeI	CTNAG	2 cut(s)	198, 297
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	141
EcoRV	GATATC	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	3 cut(s)	93, 123, 265
FaiI	YATR	3 cut(s)	91, 121, 263
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	3 cut(s)	89, 119, 261
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	252, 255, 290
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	252, 255, 290
FspBI	CTAG	2 cut(s)	159, 258
GluI	GCNGC	3 cut(s)	252, 255, 290
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	93, 123, 265
HinfI	GANTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 107, 124
HpyF3I	CTNAG	2 cut(s)	198, 297
Hsp92II	CATG	3 cut(s)	93, 123, 265
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	129, 185, 208, 316, 333, 349
Lsp1109I	GCAGC	3 cut(s)	238, 241, 301
LweI	GCATC	2 cut(s)	105, 348
MaeI	CTAG	2 cut(s)	159, 258
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	267
MnlI	CCTC	4 cut(s)	32, 81, 239, 306
MseI	TTAA	3 cut(s)	60, 243, 285
MspCI	CTTAAG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	242
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	47, 107, 124
NdeII	GATC	1 cut(s)	271
NheI	GCTAGC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	93, 123, 265
NlaIV	GGNNCC	1 cut(s)	227
NspI	RCATGY	2 cut(s)	93, 265
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	253, 256, 291
Psp124BI	GAGCTC	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	60, 243, 285
SatI	GCNGC	3 cut(s)	252, 255, 290
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	3 cut(s)	143, 253, 294
SfaNI	GCATC	2 cut(s)	105, 348
SfcI	CTRYAG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	2 cut(s)	149, 326
SspMI	CTAG	2 cut(s)	159, 258
SstI	GAGCTC	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	60, 243, 285
Tru9I	TTAA	3 cut(s)	60, 243, 285
TseI	GCWGC	3 cut(s)	251, 254, 289
Vha464I	CTTAAG	1 cut(s)	284
XceI	RCATGY	2 cut(s)	93, 265
XspI	CTAG	2 cut(s)	159, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.