Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Forward (+)

49302039 .. 49302395

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGAACAAAGTGGCTTCCCTCTTGGCTTTCGCGTTGGCGATGACTGCCATTGTCATTAATGCTTCTCCTCCAAATGGGGATATCACATGCCAAACTGCCTTGCTTGTTTTGATGCCATGTAAGCCTTACTTGGAGAGCTCTGGCCCGCCAACCCCTAGCGTTTTCTGTTGTAAGGGTGTTCAAAATGTTACCGCTCAGGCTACCACTACCGAGATTCGCAGGAGCCTCTGCGAATGCTTTAAGCAAGCTGCTGCTAGCATGTCAATTGATCCTGAAAAACTTAAGCAGCTTCCTCAGTTCTGCCAAGTCTCCGTTCCTGTTCCGCTTGACCCCAGCATCGACTGTAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

12.56

Weight (kDa)

6.14

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	16 - 108	1.3e-09	Probable lipid transfer
Tryp_alpha_amyl	PF00234	31 - 116	4.8e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AccII	CGCG	1 cut(s)	35
AciI	CCGC	3 cut(s)	149, 195, 326
AclWI	GGATC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	141, 251, 292
AluI	AGCT	3 cut(s)	141, 251, 292
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	251, 254, 289
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	146
AsuNHI	GCTAGC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	238, 241, 301
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	159, 258
BfmI	CTRYAG	1 cut(s)	346
BfrI	CTTAAG	1 cut(s)	284
BisI	GCNGC	3 cut(s)	252, 255, 290
BlsI	GCNGC	3 cut(s)	253, 256, 291
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	227
BmsI	GCATC	2 cut(s)	105, 348
BmtI	GCTAGC	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	2 cut(s)	212, 311
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	238, 241, 301
BseYI	CCCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	3 cut(s)	149, 195, 326
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	211, 310
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	227
BspOI	GCTAGC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	197
BssMI	GATC	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	347
BstAFI	CTTAAG	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	149, 249, 259
BstDEI	CTNAG	2 cut(s)	198, 297
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 124
BstNSI	RCATGY	2 cut(s)	93, 265
BstSFI	CTRYAG	1 cut(s)	346
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	238, 241, 301
BsuRI	GGCC	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	56
Cac8I	GCNNGC	3 cut(s)	149, 249, 259
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	3 cut(s)	90, 120, 262
CviJI	RGCY	9 cut(s)	17, 29, 127, 141, 147, 203, 228, 251, 292
CviKI_1	RGCY	9 cut(s)	17, 29, 127, 141, 147, 203, 228, 251, 292
DdeI	CTNAG	2 cut(s)	198, 297
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	141
EcoRV	GATATC	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	3 cut(s)	93, 123, 265
FaiI	YATR	3 cut(s)	91, 121, 263
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	3 cut(s)	89, 119, 261
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	252, 255, 290
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	252, 255, 290
FspBI	CTAG	2 cut(s)	159, 258
GluI	GCNGC	3 cut(s)	252, 255, 290
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	93, 123, 265
HinfI	GANTC	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 124
HpyF3I	CTNAG	2 cut(s)	198, 297
Hsp92II	CATG	3 cut(s)	93, 123, 265
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	129, 185, 208, 288, 333, 349
Lsp1109I	GCAGC	3 cut(s)	238, 241, 301
LweI	GCATC	2 cut(s)	105, 348
MaeI	CTAG	2 cut(s)	159, 258
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	273
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	1 cut(s)	271
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	267
MnlI	CCTC	4 cut(s)	32, 81, 239, 306
MseI	TTAA	3 cut(s)	60, 243, 285
MspCI	CTTAAG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	242
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	47, 124
NdeII	GATC	1 cut(s)	271
NheI	GCTAGC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	93, 123, 265
NlaIV	GGNNCC	1 cut(s)	227
NspI	RCATGY	2 cut(s)	93, 265
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	253, 256, 291
PshBI	ATTAAT	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	60, 243, 285
SatI	GCNGC	3 cut(s)	252, 255, 290
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	3 cut(s)	143, 253, 294
SfaNI	GCATC	2 cut(s)	105, 348
SfcI	CTRYAG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	3 cut(s)	149, 195, 326
SspMI	CTAG	2 cut(s)	159, 258
SstI	GAGCTC	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	60, 243, 285
Tru9I	TTAA	3 cut(s)	60, 243, 285
TseI	GCWGC	3 cut(s)	251, 254, 289
TspGWI	ACGGA	1 cut(s)	304
Vha464I	CTTAAG	1 cut(s)	284
VspI	ATTAAT	1 cut(s)	60
XceI	RCATGY	2 cut(s)	93, 265
XspI	CTAG	2 cut(s)	159, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.