Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Reverse (-)

28712008 .. 28712349

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAATTGGTGATCCTTATCGGGTTGATGGTTATGGTTCTGAACCATGCAAGTCCTGCAAATGGCGATATCACATGCCAAGAGGCCTTGATGGATTTGATGCCATGTAAGGCATACTTGACGGGGTCCGGCCCCGGGACTCCTCCGATTACTTGTTGCATTGGTGTGAAAACCGTTTATGATGCGGCTACCACCAGAGAGTGTCGGAGGAACCTCTGTGAATGCTTCAAGAAAGCAGCTGCTGGCATTCCGATCAACCCTGACAGACTCAGGCAGCTTCCTGACTTCTGCCATGTGTCCCTTCCCGTTCCTCTCGACCCCAAAATGGACTGTGAAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

114

Amino Acids

12.2

Weight (kDa)

6.68

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	13 - 101	3e-10	Probable lipid transfer
Tryp_alpha_amyl	PF00234	26 - 111	1.6e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	7
AfiI	CCNNNNNNNGG	3 cut(s)	62, 135, 325
AgsI	TTSAA	1 cut(s)	229
AluBI	AGCT	2 cut(s)	239, 277
AluI	AGCT	2 cut(s)	239, 277
AlwI	GGATC	1 cut(s)	7
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	84, 130
ApeKI	GCWGC	3 cut(s)	236, 239, 274
AspS9I	GGNCC	2 cut(s)	126, 131
AsuC2I	CCSGG	2 cut(s)	135, 136
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	226, 248, 286
BccI	CCATC	2 cut(s)	22, 85
BcnI	CCSGG	2 cut(s)	135, 136
BisI	GCNGC	4 cut(s)	186, 237, 240, 275
BlsI	GCNGC	4 cut(s)	187, 238, 241, 276
Bme1390I	CCNGG	2 cut(s)	135, 136
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	126, 131
BmiI	GGNNCC	3 cut(s)	127, 133, 212
BmrFI	CCNGG	2 cut(s)	135, 136
BmsI	GCATC	2 cut(s)	90, 172
BpuMI	CCSGG	2 cut(s)	135, 136
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	133, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 135, 325
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	133, 134
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	3 cut(s)	62, 135, 325
BseMII	CTCAG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	226, 248, 286
BshFI	GGCC	2 cut(s)	86, 132
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	129, 135
BslFI	GGGAC	2 cut(s)	151, 283
BslI	CCNNNNNNNGG	3 cut(s)	62, 135, 325
BsmFI	GGGAC	2 cut(s)	151, 283
BsmI	GAATGC	2 cut(s)	227, 246
BsnI	GGCC	2 cut(s)	86, 132
BsoBI	CYCGRG	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	12, 252
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	86, 132
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	127, 133, 212
BspPI	GGATC	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	133, 134
BssMI	GATC	2 cut(s)	12, 252
Bst4CI	ACNGT	2 cut(s)	175, 332
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	269
BstKTI	GATC	2 cut(s)	15, 255
BstMBI	GATC	2 cut(s)	12, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	133, 134
BstV1I	GCAGC	3 cut(s)	226, 248, 286
BsuRI	GGCC	2 cut(s)	86, 132
Cac8I	GCNNGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	126, 131
Cfr9I	CCCGGG	1 cut(s)	134
CviAII	CATG	4 cut(s)	47, 75, 105, 293
CviJI	RGCY	5 cut(s)	86, 132, 188, 239, 277
CviKI_1	RGCY	5 cut(s)	86, 132, 188, 239, 277
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	14, 254
DpnII	GATC	2 cut(s)	12, 252
Eco147I	AGGCCT	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	70
FaeI	CATG	4 cut(s)	50, 78, 108, 296
FaiI	YATR	7 cut(s)	35, 48, 76, 106, 115, 180, 294
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	2 cut(s)	151, 283
FatI	CATG	4 cut(s)	46, 74, 104, 292
Fnu4HI	GCNGC	4 cut(s)	186, 237, 240, 275
Fsp4HI	GCNGC	4 cut(s)	186, 237, 240, 275
GluI	GCNGC	4 cut(s)	186, 237, 240, 275
HaeIII	GGCC	2 cut(s)	86, 132
HapII	CCGG	2 cut(s)	129, 135
Hin1II	CATG	4 cut(s)	50, 78, 108, 296
HinfI	GANTC	2 cut(s)	139, 267
HpaII	CCGG	2 cut(s)	129, 135
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	4 cut(s)	42, 147, 207, 252
Hpy188III	TCNNGA	3 cut(s)	229, 281, 314
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	2 cut(s)	175, 332
HpyCH4V	TGCA	3 cut(s)	50, 59, 159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	4 cut(s)	50, 78, 108, 296
Kzo9I	GATC	2 cut(s)	12, 252
LpnPI	CCDG	8 cut(s)	69, 142, 148, 208, 228, 256, 273, 294
Lsp1109I	GCAGC	3 cut(s)	226, 248, 286
LweI	GCATC	2 cut(s)	90, 172
MalI	GATC	2 cut(s)	14, 254
MboI	GATC	2 cut(s)	12, 252
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	133, 261
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	76, 153, 201, 224, 321
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	2 cut(s)	129, 135
MspR9I	CCNGG	2 cut(s)	135, 136
Mva1269I	GAATGC	2 cut(s)	227, 246
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	2 cut(s)	135, 136
NdeII	GATC	2 cut(s)	12, 252
NlaIII	CATG	4 cut(s)	50, 78, 108, 296
NlaIV	GGNNCC	3 cut(s)	127, 133, 212
NspI	RCATGY	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	86
PctI	GAATGC	2 cut(s)	227, 246
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	187, 238, 241, 276
PleI	GAGTC	2 cut(s)	133, 261
PpsI	GAGTC	2 cut(s)	133, 261
PspN4I	GGNNCC	3 cut(s)	127, 133, 212
PspPI	GGNCC	2 cut(s)	126, 131
PstNI	CAGNNNCTG	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	164
SatI	GCNGC	4 cut(s)	186, 237, 240, 275
Sau3AI	GATC	2 cut(s)	12, 252
Sau96I	GGNCC	2 cut(s)	126, 131
SchI	GAGTC	2 cut(s)	133, 261
ScrFI	CCNGG	2 cut(s)	135, 136
SetI	ASST	3 cut(s)	216, 241, 279
SfaNI	GCATC	2 cut(s)	90, 172
SinI	GGWCC	1 cut(s)	126
SmaI	CCCGGG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	133, 134
TaaI	ACNGT	2 cut(s)	175, 332
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	5
TauI	GCSGC	1 cut(s)	188
TseI	GCWGC	3 cut(s)	236, 239, 274
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	134
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	126
XceI	RCATGY	1 cut(s)	78
XmaI	CCCGGG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.