Rorug05G0235600

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004839
Physical Location & Seq
Reverse (-)
24701507 .. 24704059
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0235600.1

Sequence Viewer

Length: 573 bp
ATGAGAATAAACTATGGCGCCTTCATTCTTGTTCTGCTGCTTTCAGTGCCACCTTTTCGCACCATCAATGCTCAGCCAACTTCGCGATCAGGATCATCATCATCATCATCACCACCAGAGAACAACAAGAGCAGCAACAGCGATGATACCATCATTGAGAAAAATAAGCCTAAGCAAAACAAACGGACAACTCTGATATTGGTTTCGCTGCTTCTGGTTCTTTTCTGTGTGACTGGGATGTCGCTCCCTTGCAGCTACGAAATTATATGCTGCTGTGTCAGCAAGCTATGTCCTCGTCGTAACGGTCTAGATCAGGCCGTCATCAAGACCTTCCCTGTCTTAAGCTACTCCGCCGTCAAAGGCCTCAAGGAAGAATCAGCACCGGAACTAGAGTGTGCTGTGTGCCTCAGTGAGTTTTTGGACGACGAATCCCTGCGTGTGTTGCCATGCAACCATGTTTTCCATTCCTGGTGCATTGATGTCTGGTTGGCCCATCATATTACCTGTCCGGTGTGCCGGGCCAAGCTCTCGCGTCATGGTGGTGAGTCACAGCCAGACGTACGAATTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

190

Amino Acids

20.95

Weight (kDa)

8.26

Isoelectric Point (pI)

62.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 131 - 173 2.4e-15 Ring finger domain
zf-RING_11 PF17123 131 - 159 1.9e-11 RING-like zinc finger
zf-C3HC4_2 PF13923 131 - 172 4.5e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 131 - 173 9.6e-06 zinc-RING finger domain
zf-C3HC4 PF00097 132 - 172 9.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 132 - 170 5.9e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 2 cut(s) 85, 532
AciI CCGC 1 cut(s) 351
AclWI GGATC 1 cut(s) 100
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 561
AflII CTTAAG 1 cut(s) 340
AjnI CCWGG 1 cut(s) 467
AluBI AGCT 4 cut(s) 255, 286, 345, 526
AluI AGCT 4 cut(s) 255, 286, 345, 526
AlwI GGATC 1 cut(s) 100
AoxI GGCC 4 cut(s) 315, 361, 489, 519
ApeKI GCWGC 5 cut(s) 37, 132, 208, 252, 270
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 490, 519
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 102, 554
BanI GGYRCC 1 cut(s) 17
BbvI GCAGC 5 cut(s) 24, 144, 195, 257, 264
BccI CCATC 3 cut(s) 71, 158, 501
BceAI ACGGC 2 cut(s) 302, 338
BciT130I CCWGG 1 cut(s) 469
BcnI CCSGG 1 cut(s) 518
BfaI CTAG 2 cut(s) 308, 389
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 5 cut(s) 38, 133, 209, 253, 271
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 5 cut(s) 39, 134, 210, 254, 272
Bme1390I CCNGG 2 cut(s) 469, 518
BmgT120I GGNCC 2 cut(s) 490, 519
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 469, 518
BmrI ACTGGG 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 171
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 518
BsaBI GATNNNNATC 2 cut(s) 91, 97
BsaHI GRCGYC 1 cut(s) 18
BsaWI WCCGGW 2 cut(s) 382, 508
Bse1I ACTGG 1 cut(s) 238
Bse8I GATNNNNATC 2 cut(s) 91, 97
BseBI CCWGG 1 cut(s) 469
BseGI GGATG 1 cut(s) 243
BseJI GATNNNNATC 2 cut(s) 91, 97
BseMII CTCAG 2 cut(s) 86, 421
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 5 cut(s) 24, 144, 195, 257, 264
Bsh1236I CGCG 2 cut(s) 85, 532
BshFI GGCC 4 cut(s) 317, 363, 491, 521
BshNI GGYRCC 1 cut(s) 17
BsiSI CCGG 3 cut(s) 383, 509, 517
BsiWI CGTACG 1 cut(s) 559
BsnI GGCC 4 cut(s) 317, 363, 491, 521
Bsp143I GATC 3 cut(s) 86, 92, 310
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp68I TCGCGA 1 cut(s) 85
BspACI CCGC 1 cut(s) 351
BspANI GGCC 4 cut(s) 317, 363, 491, 521
BspCNI CTCAG 2 cut(s) 85, 420
BspFNI CGCG 2 cut(s) 85, 532
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 340
BsrI ACTGG 1 cut(s) 238
BssMI GATC 3 cut(s) 86, 92, 310
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 469
Bst4CI ACNGT 1 cut(s) 305
BstACI GRCGYC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 3 cut(s) 72, 171, 407
BstF5I GGATG 1 cut(s) 243
BstFNI CGCG 2 cut(s) 85, 532
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 89, 95, 313
BstMBI GATC 3 cut(s) 86, 92, 310
BstMWI GCNNNNNNNGC 5 cut(s) 46, 82, 138, 279, 442
BstNI CCWGG 1 cut(s) 469
BstSCI CCNGG 2 cut(s) 467, 516
BstUI CGCG 2 cut(s) 85, 532
BstV1I GCAGC 5 cut(s) 24, 144, 195, 257, 264
BsuRI GGCC 4 cut(s) 317, 363, 491, 521
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 51, 415
BtuMI TCGCGA 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 284
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 490, 519
CseI GACGC 1 cut(s) 521
Csp6I GTAC 1 cut(s) 560
CviAII CATG 3 cut(s) 447, 455, 536
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 3 cut(s) 72, 171, 407
DinI GGCGCC 1 cut(s) 19
DpnI GATC 3 cut(s) 88, 94, 312
DpnII GATC 3 cut(s) 86, 92, 310
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
EciI GGCGGA 1 cut(s) 340
Eco147I AGGCCT 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 467
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
FaeI CATG 3 cut(s) 450, 458, 539
FaiI YATR 8 cut(s) 15, 266, 268, 289, 448, 456, 498, 537
FatI CATG 3 cut(s) 446, 454, 535
Fnu4HI GCNGC 5 cut(s) 38, 133, 209, 253, 271
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 5 cut(s) 38, 133, 209, 253, 271
FspBI CTAG 2 cut(s) 308, 389
GlaI GCGC 1 cut(s) 19
GluI GCNGC 5 cut(s) 38, 133, 209, 253, 271
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 317, 363, 491, 521
HapII CCGG 3 cut(s) 383, 509, 517
HgaI GACGC 1 cut(s) 521
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 3 cut(s) 450, 458, 539
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 3 cut(s) 374, 428, 545
HpaII CCGG 3 cut(s) 383, 509, 517
HphI GGTGA 2 cut(s) 102, 554
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 4 cut(s) 84, 90, 308, 325
Hpy99I CGWCG 2 cut(s) 300, 428
HpyAV CCTTC 2 cut(s) 31, 340
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 3 cut(s) 252, 450, 474
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 82, 138, 279, 442
HpyF3I CTNAG 3 cut(s) 72, 171, 407
HpySE526I ACGT 1 cut(s) 558
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 3 cut(s) 450, 458, 539
HspAI GCGC 1 cut(s) 18
KasI GGCGCC 1 cut(s) 17
Kzo9I GATC 3 cut(s) 86, 92, 310
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 5 cut(s) 24, 144, 195, 257, 264
MaeI CTAG 2 cut(s) 308, 389
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 3 cut(s) 229, 299, 546
MalI GATC 3 cut(s) 88, 94, 312
MboI GATC 3 cut(s) 86, 92, 310
MboII GAAGA 1 cut(s) 383
MluCI AATT 2 cut(s) 261, 564
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 1 cut(s) 554
MnlI CCTC 3 cut(s) 303, 374, 416
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 540
MspCI CTTAAG 1 cut(s) 340
MspI CCGG 3 cut(s) 383, 509, 517
MspR9I CCNGG 2 cut(s) 469, 518
MvaI CCWGG 1 cut(s) 469
MvnI CGCG 2 cut(s) 85, 532
MwoI GCNNNNNNNGC 5 cut(s) 46, 82, 138, 279, 442
NarI GGCGCC 1 cut(s) 18
NciI CCSGG 1 cut(s) 518
NdeII GATC 3 cut(s) 86, 92, 310
NlaIII CATG 3 cut(s) 450, 458, 539
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 2 cut(s) 229, 546
NruI TCGCGA 1 cut(s) 85
PceI AGGCCT 1 cut(s) 363
PfeI GAWTC 2 cut(s) 374, 428
Pfl23II CGTACG 1 cut(s) 559
PkrI GCNGC 5 cut(s) 39, 134, 210, 254, 272
PleI GAGTC 1 cut(s) 553
PluTI GGCGCC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 467
PspGI CCWGG 1 cut(s) 467
PspLI CGTACG 1 cut(s) 559
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 490, 519
RruI TCGCGA 1 cut(s) 85
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
RseI CAYNNNNRTG 1 cut(s) 540
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 5 cut(s) 38, 133, 209, 253, 271
Sau3AI GATC 3 cut(s) 86, 92, 310
Sau96I GGNCC 2 cut(s) 490, 519
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 2 cut(s) 469, 518
SetI ASST 8 cut(s) 55, 257, 288, 332, 347, 506, 528, 561
SfoI GGCGCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 340, 365
SmoI CTYRAG 2 cut(s) 340, 365
Sse9I AATT 2 cut(s) 261, 564
SseBI AGGCCT 1 cut(s) 363
SsiI CCGC 1 cut(s) 351
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 2 cut(s) 308, 389
StuI AGGCCT 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 467, 516
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 561
TasI AATT 2 cut(s) 261, 564
TfiI GAWTC 2 cut(s) 374, 428
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 2 cut(s) 51, 415
TseFI GTSAC 2 cut(s) 229, 546
TseI GCWGC 5 cut(s) 37, 132, 208, 252, 270
Tsp45I GTSAC 2 cut(s) 229, 546
TspDTI ATGAA 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 2 cut(s) 51, 415
Vha464I CTTAAG 1 cut(s) 340
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 2 cut(s) 308, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.