Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003092.1

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Forward (+)

121665 .. 122745

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003092.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgactagctgctggtctctcttggcttttggtattgtgatcatggtgttgatgatcagtccatatcctgcaaatggcctcacatgtgatgagaccgcaggcattttgaatccctgtcaagattttttggttggaaatggccctccaactcctagctcttcttgctgtggagctgtgaaagaattggtttctaaagttacatccagacaagtacgtagagatctgtgtgaatttttgatcctgaaaagggatcctcttcgtccaaaggatgctagaggcagaagtgccttacttagtacaataggcgcattattgtacttagcacgatgcacaagaccagacatctcacttgcagtgaacttgttagctaagagagacgatggattcggagccttcccacaccaggaatgccgccaacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

140

Amino Acids

15.25

Weight (kDa)

8.7

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 412
AclWI	GGATC	3 cut(s)	232, 245, 258
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	3 cut(s)	213, 298, 317
AfiI	CCNNNNNNNGG	3 cut(s)	74, 247, 403
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	4 cut(s)	9, 156, 173, 368
AluI	AGCT	4 cut(s)	9, 156, 173, 368
Alw26I	GTCTC	3 cut(s)	21, 86, 369
AlwI	GGATC	3 cut(s)	232, 245, 258
AoxI	GGCC	2 cut(s)	76, 139
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	250
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	404
BclI	TGATCA	2 cut(s)	39, 54
BcoDI	GTCTC	3 cut(s)	21, 86, 369
BfaI	CTAG	4 cut(s)	6, 153, 273, 421
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	2 cut(s)	10, 412
BlsI	GCNGC	2 cut(s)	11, 413
Bme1390I	CCNGG	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	252, 391
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	2 cut(s)	259, 317
BsaAI	YACGTR	1 cut(s)	215
BsaI	GGTCTC	2 cut(s)	21, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 247, 403
BseBI	CCWGG	1 cut(s)	404
BseGI	GGATG	2 cut(s)	200, 274
BseLI	CCNNNNNNNGG	3 cut(s)	74, 247, 403
BshFI	GGCC	2 cut(s)	78, 141
BslI	CCNNNNNNNGG	3 cut(s)	74, 247, 403
BsmAI	GTCTC	3 cut(s)	21, 86, 369
BsmBI	CGTCTC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	2 cut(s)	78, 141
Bso31I	GGTCTC	2 cut(s)	21, 86
Bsp143I	GATC	5 cut(s)	39, 54, 220, 237, 250
BspACI	CCGC	2 cut(s)	96, 412
BspANI	GGCC	2 cut(s)	78, 141
BspLI	GGNNCC	2 cut(s)	252, 391
BspPI	GGATC	3 cut(s)	232, 245, 258
BspQI	GCTCTTC	1 cut(s)	163
BspTNI	GGTCTC	2 cut(s)	21, 86
BssMI	GATC	5 cut(s)	39, 54, 220, 237, 250
Bst2UI	CCWGG	1 cut(s)	404
Bst6I	CTCTTC	2 cut(s)	163, 261
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	293, 319, 369
BstF5I	GGATG	2 cut(s)	200, 274
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	5 cut(s)	42, 57, 223, 240, 253
BstMAI	GTCTC	3 cut(s)	21, 86, 369
BstMBI	GATC	5 cut(s)	39, 54, 220, 237, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	402
BstSNI	TACGTA	1 cut(s)	215
BstX2I	RGATCY	2 cut(s)	220, 250
BstYI	RGATCY	2 cut(s)	220, 250
BsuRI	GGCC	2 cut(s)	78, 141
BtsCI	GGATG	2 cut(s)	200, 274
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	3 cut(s)	212, 297, 316
CviAII	CATG	2 cut(s)	43, 84
CviJI	RGCY	8 cut(s)	9, 26, 78, 141, 156, 173, 368, 392
CviKI_1	RGCY	8 cut(s)	9, 26, 78, 141, 156, 173, 368, 392
CviQI	GTAC	3 cut(s)	212, 297, 316
DdeI	CTNAG	3 cut(s)	293, 319, 369
DpnI	GATC	5 cut(s)	41, 56, 222, 239, 252
DpnII	GATC	5 cut(s)	39, 54, 220, 237, 250
Eam1104I	CTCTTC	2 cut(s)	163, 261
EarI	CTCTTC	2 cut(s)	163, 261
Eco105I	TACGTA	1 cut(s)	215
Eco31I	GGTCTC	2 cut(s)	21, 86
EcoRII	CCWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	2 cut(s)	46, 87
FaiI	YATR	3 cut(s)	44, 64, 85
FatI	CATG	2 cut(s)	42, 83
FbaI	TGATCA	2 cut(s)	39, 54
Fnu4HI	GCNGC	2 cut(s)	10, 412
FokI	GGATG	2 cut(s)	187, 281
Fsp4HI	GCNGC	2 cut(s)	10, 412
FspBI	CTAG	4 cut(s)	6, 153, 273, 421
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	10, 412
HaeIII	GGCC	2 cut(s)	78, 141
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	46, 87
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	2 cut(s)	109, 384
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	389
Hpy188III	TCNNGA	3 cut(s)	119, 204, 241
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	71, 330, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	3 cut(s)	293, 319, 369
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	46, 87
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	2 cut(s)	39, 54
Kzo9I	GATC	5 cut(s)	39, 54, 220, 237, 250
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	170, 389
LpnPI	CCDG	8 cut(s)	81, 84, 127, 217, 254, 351, 389, 416
LweI	GCATC	2 cut(s)	259, 317
MaeI	CTAG	4 cut(s)	6, 153, 273, 421
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	5 cut(s)	41, 56, 222, 239, 252
MboI	GATC	5 cut(s)	39, 54, 220, 237, 250
MboII	GAAGA	2 cut(s)	150, 248
MflI	RGATCY	2 cut(s)	220, 250
MluCI	AATT	2 cut(s)	182, 230
MmeI	TCCRAC	2 cut(s)	112, 170
MnlI	CCTC	4 cut(s)	89, 153, 264, 269
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	162
NdeII	GATC	5 cut(s)	39, 54, 220, 237, 250
NlaIII	CATG	2 cut(s)	46, 87
NlaIV	GGNNCC	2 cut(s)	252, 391
NspI	RCATGY	1 cut(s)	87
PciI	ACATGT	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	163
PctI	GAATGC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	109, 384
PkrI	GCNGC	2 cut(s)	11, 413
Ppu21I	YACGTR	1 cut(s)	215
PscI	ACATGT	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	252, 391
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	220, 250
RsaI	GTAC	3 cut(s)	213, 298, 317
RsaNI	GTAC	3 cut(s)	212, 297, 316
SapI	GCTCTTC	1 cut(s)	163
SatI	GCNGC	2 cut(s)	10, 412
Sau3AI	GATC	5 cut(s)	39, 54, 220, 237, 250
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	404
SetI	ASST	5 cut(s)	11, 158, 175, 217, 370
SfaNI	GCATC	2 cut(s)	259, 317
SnaBI	TACGTA	1 cut(s)	215
Sse9I	AATT	2 cut(s)	182, 230
SsiI	CCGC	2 cut(s)	96, 412
SspMI	CTAG	4 cut(s)	6, 153, 273, 421
StyD4I	CCNGG	1 cut(s)	402
TaiI	ACGT	1 cut(s)	217
TasI	AATT	2 cut(s)	182, 230
TatI	WGTACW	2 cut(s)	296, 315
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	109, 384
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	1 cut(s)	9
TspRI	CASTG	1 cut(s)	360
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	4 cut(s)	6, 153, 273, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.