Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Reverse (-)

43629213 .. 43629766

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTTCCCTCTTGGCTTTCGCCTTGGCGATGACCATTGTCCTCAATGCTTCTCCCACAAATGGGGATATCACCTGTCAAGATGCCTTGTATGATTTGATACCATGTCAGCCTTACTTGGAGAGCTCCGGCCCGCCGACCCCTAGCGTTCCCTGTTGTGAAGGTGTTCGAAATGTGAACGCTAATGCTACCACTACCGAGATTCGCAGGAGCCTCTGCGAATGCTTTAAGAAGGCTGCTGCTAGCATGCCAATTGACCCTCAGAAACTTATGAAGCTTCCTCAATTCTGCCAGGTCTCCGTTCCTGTTACTCTTGACCCCAAAGTCGACTGTAGCAAAGATCTGATCGAAGGCAGGAGTGATGGCAAAATAAAATCTGGAGAAGGAGAAAGATTATCTACATCACCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

138

Amino Acids

14.63

Weight (kDa)

5.09

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	16 - 103	5.6e-10	Probable lipid transfer
Tryp_alpha_amyl	PF00234	26 - 110	3.9e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	62, 63
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	2 cut(s)	126, 277
AluI	AGCT	2 cut(s)	126, 277
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	236, 239
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	64, 396
AsuII	TTCGAA	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	223, 226
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	144, 243
BfmI	CTRYAG	1 cut(s)	331
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	2 cut(s)	237, 240
BlsI	GCNGC	2 cut(s)	238, 241
Bme1390I	CCNGG	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	73
BmtI	GCTAGC	1 cut(s)	246
BoxI	GACNNNNGTC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 63
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	62, 63
BseMII	CTCAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	223, 226
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	62, 63
BsmAI	GTCTC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	340, 345
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	212
BspOI	GCTAGC	1 cut(s)	246
BspT104I	TTCGAA	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	340, 345
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	134, 244, 248
BstDEI	CTNAG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	343, 348
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	340, 345
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	250
BstPAI	GACNNNNGTC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	223, 226
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	44
Cac8I	GCNNGC	3 cut(s)	134, 244, 248
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	2 cut(s)	105, 247
CviJI	RGCY	8 cut(s)	5, 17, 112, 126, 132, 213, 236, 277
CviKI_1	RGCY	8 cut(s)	5, 17, 112, 126, 132, 213, 236, 277
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	342, 347
DpnII	GATC	2 cut(s)	340, 345
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	301
Eco32I	GATATC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	291
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	108, 250
FaiI	YATR	4 cut(s)	93, 106, 248, 272
FatI	CATG	2 cut(s)	104, 246
FauI	CCCGC	1 cut(s)	141
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	237, 240
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	237, 240
FspBI	CTAG	2 cut(s)	144, 243
GluI	GCNGC	2 cut(s)	237, 240
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	108, 250
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	64, 396
Hpy166II	GTNNAC	2 cut(s)	178, 328
Hpy188I	TCNGA	2 cut(s)	264, 345
Hpy188III	TCNNGA	3 cut(s)	80, 314, 378
Hpy8I	GTNNAC	2 cut(s)	178, 328
HpyAV	CCTTC	4 cut(s)	155, 226, 344, 377
HpyCH4III	ACNGT	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	108, 250
Kzo9I	GATC	2 cut(s)	340, 345
LmnI	GCTCC	2 cut(s)	131, 210
LpnPI	CCDG	9 cut(s)	88, 142, 166, 193, 278, 305, 318, 340, 363
Lsp1109I	GCAGC	2 cut(s)	223, 226
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	144, 243
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	342, 347
MboI	GATC	2 cut(s)	340, 345
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	2 cut(s)	252, 284
MnlI	CCTC	5 cut(s)	20, 53, 224, 270, 291
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	228
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	293
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	293
NdeII	GATC	2 cut(s)	340, 345
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	108, 250
NlaIV	GGNNCC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	238, 241
PshAI	GACNNNNGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	128
SalI	GTCGAC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	237, 240
Sau3AI	GATC	2 cut(s)	340, 345
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	6 cut(s)	77, 128, 166, 279, 297, 409
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	169
SphI	GCATGC	1 cut(s)	250
Sse9I	AATT	2 cut(s)	252, 284
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	2 cut(s)	144, 243
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	3 cut(s)	169, 327, 348
TasI	AATT	2 cut(s)	252, 284
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	2 cut(s)	236, 239
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	289
XceI	RCATGY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	2 cut(s)	144, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.