RchiOBHm_Chr5g0075671

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004839
Physical Location & Seq
Forward (+)
81454627 .. 81454974
348 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35038

Sequence Viewer

Length: 348 bp
ATGGAGAATAAAATGGCTTCCCTCTTGGCTTTTTCCATGGCGATTTTTGCCATCATCTTGACTGCAAATGGGGATATCACATTCCAAGCTGCCCTGCTAGATTTGTTGCCATGTGAGCCTTTCTTGGTGAGCTCCGGCCCGACAACTCCTATTGTTCCTTATTGTTCAGCTGTTCAAAACCTGAATGCTCAAGCTACCACCACCAAGACTCGTAGAAACCTTTGCGAATGCTTTAAGAAGGCTGCTGCTGGCATTGCAATTGACCCTACGAAACTTAAGCAGCTTCCTCAGTTTTGCAAGGTCTCCCTTCCAGTCACTCTTGACCCAAGCATCGATTGTAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

115

Amino Acids

12.32

Weight (kDa)

8.25

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 32 - 113 8e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 5 cut(s) 89, 132, 170, 194, 283
AluI AGCT 5 cut(s) 89, 132, 170, 194, 283
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 4 cut(s) 89, 242, 245, 280
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 139
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 4 cut(s) 76, 229, 232, 292
BccI CCATC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 98
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 4 cut(s) 90, 243, 246, 281
BlsI GCNGC 4 cut(s) 91, 244, 247, 282
BmgT120I GGNCC 1 cut(s) 137
BmsI GCATC 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 174
Bsa29I ATCGAT 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 252
BseCI ATCGAT 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 36
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 4 cut(s) 76, 229, 232, 292
BshFI GGCC 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 307
BsmI GAATGC 2 cut(s) 190, 233
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 134
Bsp19I CCATGG 1 cut(s) 36
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 301
BspDI ATCGAT 1 cut(s) 333
BspTI CTTAAG 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 36
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 47, 115, 254
BstV1I GCAGC 4 cut(s) 76, 229, 232, 292
Bsu15I ATCGAT 1 cut(s) 333
BsuRI GGCC 1 cut(s) 138
BsuTUI ATCGAT 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 333
CviAII CATG 2 cut(s) 37, 111
DdeI CTNAG 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 307
Eco32I GATATC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 2 cut(s) 40, 114
FaiI YATR 2 cut(s) 38, 112
FatI CATG 2 cut(s) 36, 110
Fnu4HI GCNGC 4 cut(s) 90, 243, 246, 281
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 4 cut(s) 90, 243, 246, 281
FspBI CTAG 1 cut(s) 98
GluI GCNGC 4 cut(s) 90, 243, 246, 281
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 135
Hin1II CATG 2 cut(s) 40, 114
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 58, 320
HpyAV CCTTC 2 cut(s) 232, 317
HpyCH4V TGCA 3 cut(s) 65, 257, 297
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 115, 254
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 2 cut(s) 40, 114
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 5 cut(s) 107, 148, 194, 234, 324
Lsp1109I GCAGC 4 cut(s) 76, 229, 232, 292
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 313
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 2 cut(s) 32, 297
MseI TTAA 2 cut(s) 234, 276
MspA1I CMGCKG 1 cut(s) 170
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 2 cut(s) 190, 233
MwoI GCNNNNNNNGC 3 cut(s) 47, 115, 254
NcoI CCATGG 1 cut(s) 36
NlaIII CATG 2 cut(s) 40, 114
NmuCI GTSAC 1 cut(s) 313
PctI GAATGC 2 cut(s) 190, 233
PkrI GCNGC 4 cut(s) 91, 244, 247, 282
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 170
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 234, 276
SatI GCNGC 4 cut(s) 90, 243, 246, 281
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 134
SetI ASST 8 cut(s) 91, 134, 172, 183, 196, 222, 285, 303
SfaNI GCATC 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 189, 275
SmoI CTYRAG 2 cut(s) 189, 275
Sse9I AATT 1 cut(s) 258
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 134
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 1 cut(s) 333
TasI AATT 1 cut(s) 258
Tru1I TTAA 2 cut(s) 234, 276
Tru9I TTAA 2 cut(s) 234, 276
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 89, 242, 245, 280
Tsp45I GTSAC 1 cut(s) 313
Vha464I CTTAAG 1 cut(s) 275
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.