FvH4_2g06530

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003936
Physical Location & Seq
Reverse (-)
5429911 .. 5431341
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06530.t1

Sequence Viewer

Length: 891 bp
ATGGCCGCCACCGCCGATCACTCGGACGTCGAACTCGAGTTCCGCTTTTTCCGCGTCCACAAAGACGGCACCATCCACCGAACTCATCCCACCATCGATAAAGTCCCACCGTCCGACGATCCAACCACCGACGTCCGGTCCAAAGACGTCACCATCTCAACTGACCCGCCCATCTCCGCCCGCATTTTCCTGCCCAAATCCGTCCACCAGACCAAGAAGCTCCCCGTCCTCCTCTACCTCCACGGCGGCGGCTTCTGCTTCGAATCGCCCTGCTCCGCCACCTACCACAACTACGTCTCCACCCTCGCCGCTTCCGCCAACGTCATCGCCGTCTCAGTCGAGTACGGCCTCTTCCCCACCAGGCCCATTCCCGCTTGCTACGACGACTCCTGGGCCGCCCTCCAATGGGTCGCAACCGGGGGGTCGGAGCCCTGGCTAAATGACTACGCCGACTTGACCCGCGTCTTTGTCGGCGGGGATAGCGCTGGAGGGAACATAGCGCACACTTTGCTATTCCGGGTCGGGTCGATCGGGTTACCAGGAGCGAAAGTGGTCGGGGCTGTTCTGGTGCATCCCTACTTTGGTGGGACTGATGATGATAAGATGTGGCTGTACATGAACAAGGAGAATGAAGGGTTGCAGGACAGGAGGCTGGTGCCGGCCACAGAGGATCTACGGCGGCTGGGGTGTGAGAGGGTGTTGGTGTTTGTGGCGGAGATGGACCATTTGAAAGGTGGCGGGAAGAGGTATATGGAGGAGCTGAAGAAGAGTGGGTGGACTGGGAGTGTGGAGGTGGAGGAGACTGTAGGGAAAGACCATTGCTTTCACTTGGCTGAACCAAATGATGAGCTGACTACGGATTTGATCAAGAAAAATGGCTTCGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

297

Amino Acids

32.67

Weight (kDa)

5.62

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 62 - 168 3.1e-09 BD-FAE
COesterase PF00135 62 - 117 4.7e-07 Carboxylesterase family
Abhydrolase_3 PF07859 77 - 197 1.7e-31 alpha/beta hydrolase fold
Abhydrolase_3 PF07859 204 - 276 2.9e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 30, 135, 150
AccB1I GGYRCC 2 cut(s) 68, 655
AccII CGCG 2 cut(s) 54, 462
AclWI GGATC 2 cut(s) 113, 678
AcoI YGGCCR 2 cut(s) 3, 660
AcuI CTGAAG 1 cut(s) 782
AcyI GRCGYC 3 cut(s) 27, 132, 147
AfaI GTAC 2 cut(s) 344, 614
AfeI AGCGCT 1 cut(s) 484
AfiI CCNNNNNNNGG 4 cut(s) 135, 405, 406, 581
AgsI TTSAA 1 cut(s) 730
AhdI GACNNNNNGTC 1 cut(s) 136
AjnI CCWGG 4 cut(s) 359, 389, 431, 538
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 3 cut(s) 220, 760, 850
AluI AGCT 3 cut(s) 220, 760, 850
Alw26I GTCTC 3 cut(s) 301, 337, 794
AlwI GGATC 2 cut(s) 113, 678
Ama87I CYCGRG 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 484
AoxI GGCC 5 cut(s) 3, 346, 362, 393, 660
ArsI GACNNNNNNTTYG 2 cut(s) 844, 876
AspLEI GCGC 2 cut(s) 485, 502
AspS9I GGNCC 4 cut(s) 138, 363, 393, 721
AsuC2I CCSGG 2 cut(s) 418, 518
AsuHPI GGTGA 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 261
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 2 cut(s) 138, 721
BanI GGYRCC 2 cut(s) 68, 655
BanII GRGCYC 1 cut(s) 432
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BccI CCATC 5 cut(s) 80, 101, 161, 179, 712
BceAI ACGGC 5 cut(s) 82, 259, 314, 361, 692
BciT130I CCWGG 4 cut(s) 361, 391, 433, 540
BclI TGATCA 1 cut(s) 864
BcnI CCSGG 2 cut(s) 418, 518
BcoDI GTCTC 3 cut(s) 301, 337, 794
BfmI CTRYAG 1 cut(s) 804
BfoI RGCGCY 1 cut(s) 486
BisI GCNGC 6 cut(s) 6, 247, 250, 309, 396, 680
BlsI GCNGC 6 cut(s) 7, 248, 251, 310, 397, 681
Bme1390I CCNGG 6 cut(s) 361, 391, 418, 433, 518, 540
Bme18I GGWCC 2 cut(s) 138, 721
BmeRI GACNNNNNGTC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 4 cut(s) 138, 363, 393, 721
BmiI GGNNCC 3 cut(s) 70, 429, 657
BmrFI CCNGG 6 cut(s) 361, 391, 418, 433, 518, 540
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 789
BoxI GACNNNNGTC 1 cut(s) 461
BpmI CTGGAG 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 261
BpuMI CCSGG 2 cut(s) 418, 518
Bsa29I ATCGAT 1 cut(s) 96
BsaHI GRCGYC 3 cut(s) 27, 132, 147
BsaJI CCNNGG 4 cut(s) 241, 390, 417, 431
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 6 cut(s) 281, 311, 371, 401, 534, 564
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 405, 406, 581
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 1 cut(s) 784
Bse3DI GCAATG 1 cut(s) 817
BseBI CCWGG 4 cut(s) 361, 391, 433, 540
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 4 cut(s) 241, 390, 417, 431
BseGI GGATG 3 cut(s) 72, 85, 571
BseLI CCNNNNNNNGG 4 cut(s) 135, 405, 406, 581
BseMI GCAATG 1 cut(s) 817
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 784
BseRI GAGGAG 3 cut(s) 221, 770, 812
BseYI CCCAGC 1 cut(s) 682
Bsh1236I CGCG 2 cut(s) 54, 462
Bsh1285I CGRYCG 1 cut(s) 531
BshFI GGCC 5 cut(s) 5, 348, 364, 395, 662
BshNI GGYRCC 2 cut(s) 68, 655
BshVI ATCGAT 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 4 cut(s) 136, 417, 517, 659
BslFI GGGAC 2 cut(s) 89, 601
BslI CCNNNNNNNGG 4 cut(s) 135, 405, 406, 581
BsmAI GTCTC 3 cut(s) 301, 337, 794
BsmBI CGTCTC 2 cut(s) 301, 337
BsmFI GGGAC 2 cut(s) 89, 601
BsnI GGCC 5 cut(s) 5, 348, 364, 395, 662
BsoBI CYCGRG 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 432
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 5 cut(s) 16, 118, 528, 670, 864
BspANI GGCC 5 cut(s) 5, 348, 364, 395, 662
BspCNI CTCAG 1 cut(s) 347
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 2 cut(s) 54, 462
BspLI GGNNCC 3 cut(s) 70, 429, 657
BspPI GGATC 2 cut(s) 113, 678
BspT104I TTCGAA 1 cut(s) 261
BspT107I GGYRCC 2 cut(s) 68, 655
BsrDI GCAATG 1 cut(s) 817
BsrFI RCCGGY 1 cut(s) 658
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 1 cut(s) 784
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 4 cut(s) 241, 390, 417, 431
BssMI GATC 5 cut(s) 16, 118, 528, 670, 864
BssNI GRCGYC 3 cut(s) 27, 132, 147
Bst2UI CCWGG 4 cut(s) 361, 391, 433, 540
Bst4CI ACNGT 2 cut(s) 111, 805
Bst6I CTCTTC 3 cut(s) 356, 737, 761
BstACI GRCGYC 3 cut(s) 27, 132, 147
BstAPI GCANNNNNTGC 1 cut(s) 508
BstAUI TGTACA 1 cut(s) 612
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 181, 376, 660
BstDEI CTNAG 1 cut(s) 334
BstDSI CCRYGG 1 cut(s) 241
BstEII GGTNACC 1 cut(s) 534
BstF5I GGATG 3 cut(s) 72, 85, 571
BstFNI CGCG 2 cut(s) 54, 462
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 2 cut(s) 485, 502
BstKTI GATC 5 cut(s) 19, 121, 531, 673, 867
BstMAI GTCTC 3 cut(s) 301, 337, 794
BstMBI GATC 5 cut(s) 16, 118, 528, 670, 864
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 6 cut(s) 11, 51, 255, 314, 480, 508
BstNI CCWGG 4 cut(s) 361, 391, 433, 540
BstPAI GACNNNNGTC 1 cut(s) 461
BstPI GGTNACC 1 cut(s) 534
BstSCI CCNGG 6 cut(s) 359, 389, 416, 431, 516, 538
BstSFI CTRYAG 1 cut(s) 804
BstUI CGCG 2 cut(s) 54, 462
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 5 cut(s) 5, 348, 364, 395, 662
BsuTUI ATCGAT 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 3 cut(s) 72, 85, 571
Cac8I GCNNGC 3 cut(s) 181, 376, 660
CfoI GCGC 2 cut(s) 485, 502
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 4 cut(s) 138, 363, 393, 721
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 2 cut(s) 43, 451
Csp6I GTAC 2 cut(s) 343, 613
CviAII CATG 1 cut(s) 616
CviQI GTAC 2 cut(s) 343, 613
DdeI CTNAG 1 cut(s) 334
DpnI GATC 5 cut(s) 18, 120, 530, 672, 866
DpnII GATC 5 cut(s) 16, 118, 528, 670, 864
DriI GACNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 2 cut(s) 3, 660
Eam1104I CTCTTC 3 cut(s) 356, 737, 761
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 3 cut(s) 356, 737, 761
EciI GGCGGA 4 cut(s) 166, 265, 304, 728
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 138, 721
Eco47III AGCGCT 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 534
EcoO65I GGTNACC 1 cut(s) 534
EcoRII CCWGG 4 cut(s) 359, 389, 431, 538
EcoT38I GRGCYC 1 cut(s) 432
Esp3I CGTCTC 2 cut(s) 301, 337
FaeI CATG 1 cut(s) 619
FaiI YATR 4 cut(s) 497, 617, 750, 752
FaqI GGGAC 2 cut(s) 89, 601
FatI CATG 1 cut(s) 615
FauI CCCGC 6 cut(s) 174, 188, 379, 467, 467, 731
FbaI TGATCA 1 cut(s) 864
Fnu4HI GCNGC 6 cut(s) 6, 247, 250, 309, 396, 680
FokI GGATG 3 cut(s) 59, 72, 558
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 6 cut(s) 6, 247, 250, 309, 396, 680
GlaI GCGC 2 cut(s) 484, 501
GluI GCNGC 6 cut(s) 6, 247, 250, 309, 396, 680
GsaI CCCAGC 1 cut(s) 686
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 5 cut(s) 5, 348, 364, 395, 662
HapII CCGG 4 cut(s) 136, 417, 517, 659
HgaI GACGC 2 cut(s) 43, 451
HhaI GCGC 2 cut(s) 485, 502
Hin1I GRCGYC 3 cut(s) 27, 132, 147
Hin1II CATG 1 cut(s) 619
Hin6I GCGC 2 cut(s) 483, 500
HinP1I GCGC 2 cut(s) 483, 500
HinfI GANTC 2 cut(s) 263, 386
HpaII CCGG 4 cut(s) 136, 417, 517, 659
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 3 cut(s) 58, 205, 777
Hpy188I TCNGA 3 cut(s) 25, 115, 427
Hpy188III TCNNGA 1 cut(s) 868
Hpy8I GTNNAC 3 cut(s) 58, 205, 777
Hpy99I CGWCG 4 cut(s) 32, 119, 134, 386
HpyAV CCTTC 1 cut(s) 626
HpyCH4III ACNGT 2 cut(s) 111, 805
HpyCH4IV ACGT 5 cut(s) 27, 132, 147, 294, 321
HpyCH4V TGCA 2 cut(s) 571, 640
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 51, 255, 314, 480, 508
HpyF3I CTNAG 1 cut(s) 334
HpySE526I ACGT 5 cut(s) 27, 132, 147, 294, 321
Hsp92I GRCGYC 3 cut(s) 27, 132, 147
Hsp92II CATG 1 cut(s) 619
HspAI GCGC 2 cut(s) 483, 500
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 5 cut(s) 16, 118, 528, 670, 864
LmnI GCTCC 5 cut(s) 225, 278, 427, 542, 757
LweI GCATC 1 cut(s) 580
MaeII ACGT 5 cut(s) 27, 132, 147, 294, 321
MaeIII GTNAC 2 cut(s) 148, 534
MalI GATC 5 cut(s) 18, 120, 530, 672, 866
MboI GATC 5 cut(s) 16, 118, 528, 670, 864
MboII GAAGA 4 cut(s) 343, 754, 775, 778
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 432
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 3 cut(s) 138, 146, 405
MroNI GCCGGC 1 cut(s) 658
MseI TTAA 1 cut(s) 889
MspI CCGG 4 cut(s) 136, 417, 517, 659
MspR9I CCNGG 6 cut(s) 361, 391, 418, 433, 518, 540
MvaI CCWGG 4 cut(s) 361, 391, 433, 540
MvnI CGCG 2 cut(s) 54, 462
MwoI GCNNNNNNNGC 6 cut(s) 11, 51, 255, 314, 480, 508
NaeI GCCGGC 1 cut(s) 660
NciI CCSGG 2 cut(s) 418, 518
NdeII GATC 5 cut(s) 16, 118, 528, 670, 864
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 1 cut(s) 619
NlaIV GGNNCC 3 cut(s) 70, 429, 657
NmuCI GTSAC 1 cut(s) 148
NspV TTCGAA 1 cut(s) 261
PaeR7I CTCGAG 1 cut(s) 35
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 327
PdiI GCCGGC 1 cut(s) 660
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 6 cut(s) 7, 248, 251, 310, 397, 681
Ple19I CGATCG 1 cut(s) 531
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PshAI GACNNNNGTC 1 cut(s) 461
Psp6I CCWGG 4 cut(s) 359, 389, 431, 538
PspEI GGTNACC 1 cut(s) 534
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 4 cut(s) 359, 389, 431, 538
PspN4I GGNNCC 3 cut(s) 70, 429, 657
PspPI GGNCC 4 cut(s) 138, 363, 393, 721
PspXI VCTCGAGB 1 cut(s) 35
PsuI RGATCY 1 cut(s) 670
PvuI CGATCG 1 cut(s) 531
RsaI GTAC 2 cut(s) 344, 614
RsaNI GTAC 2 cut(s) 343, 613
SaqAI TTAA 1 cut(s) 889
SatI GCNGC 6 cut(s) 6, 247, 250, 309, 396, 680
Sau3AI GATC 5 cut(s) 16, 118, 528, 670, 864
Sau96I GGNCC 4 cut(s) 138, 363, 393, 721
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 6 cut(s) 361, 391, 418, 433, 518, 540
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 804
Sfr274I CTCGAG 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 261
SinI GGWCC 2 cut(s) 138, 721
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
StyD4I CCNGG 6 cut(s) 359, 389, 416, 431, 516, 538
TaaI ACNGT 2 cut(s) 111, 805
TaiI ACGT 5 cut(s) 30, 135, 150, 297, 324
TaqI TCGA 6 cut(s) 30, 36, 96, 261, 339, 527
TatI WGTACW 1 cut(s) 612
TauI GCSGC 6 cut(s) 8, 249, 252, 311, 398, 682
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 889
Tru9I TTAA 1 cut(s) 889
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 632, 645
TspGWI ACGGA 2 cut(s) 190, 872
VpaK11BI GGWCC 2 cut(s) 138, 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 731
XhoI CTCGAG 1 cut(s) 35
ZraI GACGTC 3 cut(s) 28, 133, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.