RLG00000014614

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003936
Physical Location & Seq
Forward (+)
55466327 .. 55467373
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014614

Sequence Viewer

Length: 903 bp
ATGGCCGCTGCCGGCGATCACTCCGACGTCGAACACGTCTTCCGCTTCTTCCGCGTCCACAAAGACGGCACCATCCACCGAACCCATGCCTCCTTCGACAAAATCCCAGCCGCCGACGACCTCACCACCGGCGTCCGATCCAAAGACGTCACCATCTCCACCGACCCACCGGTCTCCGCCCGCATCTTTGTCCCCAAATCCGCCGACCCGACCCGAAAACTCCCCCTCCTCTTCTACGTCCACGGCGGCGGCTTCTGCATGCAGTCCGCCTTCTCCTCCAGATACCACGGCTACGTCTCCACCATCTGCTCTTCCGCCGACGTCGTCGCCGTCTCGGTCGAGTACGGACTCTTCCCGACCCGGCCCATACCCGCTTGCTACGAGGACTCCTGGGCCGCTCTCCAATGGGTCGCGGCTCACGCGAACGGAACCGGGTCGGATCAATGGCTAAACGAGTACGCCGACTGGAACCGCGTGTTCATCGGCGGGGAAAGCGCGGGAGGGAACATAACACACACTCTGGTGTCCCGGGTCGGATCGGTCGGGTTACCCGGAGTGAAAGTGGTGGGGGCGATTCTATCGCATCCCTACTTCGGCGGGACCGATGATGATAAGATGTGGCTTTACATGAACAAGGAGAATGAAGGGTTGCAGGATAGGAGGCTGAAGCCGGCCGCGGAGGATCTGAGGCGGCTCGGGTGTGAGAAGGTGCTGGTGTTTGTGGCGGAGAAGGATCATTTGAACGGTGTGGGGAAGAGTTATGTGGAGGAGCTGAAGAAGAGTGGGTGGAAAGGGAGTGTGGAGATGAAGGAGAATAAGGGGAAGGGCCATTGCTTTCATTTGGATGACACAAAGGATGAGCAGGCTGTGGATTTGGTGAAGACACAACCGAAGCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

301

Amino Acids

33.01

Weight (kDa)

6.53

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 62 - 171 4.2e-10 BD-FAE
COesterase PF00135 62 - 177 7.5e-09 Carboxylesterase family
Abhydrolase_3 PF07859 77 - 280 9.4e-38 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 3 cut(s) 30, 150, 324
AccB1I GGYRCC 1 cut(s) 68
AccBSI CCGCTC 1 cut(s) 398
AccII CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
AclWI GGATC 5 cut(s) 132, 447, 544, 690, 741
AcoI YGGCCR 2 cut(s) 3, 672
AcuI CTGAAG 2 cut(s) 686, 794
AcyI GRCGYC 4 cut(s) 27, 132, 147, 321
AfaI GTAC 2 cut(s) 344, 458
AfiI CCNNNNNNNGG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 34
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 742
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 1 cut(s) 389
AleI CACNNNNGTG 1 cut(s) 521
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 1 cut(s) 772
AluI AGCT 1 cut(s) 772
Alw26I GTCTC 3 cut(s) 178, 301, 337
AlwI GGATC 5 cut(s) 132, 447, 544, 690, 741
Ama87I CYCGRG 2 cut(s) 528, 695
AoxI GGCC 5 cut(s) 3, 362, 393, 672, 826
ApeKI GCWGC 1 cut(s) 8
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 4 cut(s) 363, 393, 600, 826
AsuC2I CCSGG 5 cut(s) 361, 433, 529, 530, 552
AsuHPI GGTGA 3 cut(s) 115, 142, 889
AvaI CYCGRG 2 cut(s) 528, 695
AvaII GGWCC 1 cut(s) 600
BanI GGYRCC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 2 cut(s) 31, 887
BccI CCATC 3 cut(s) 80, 161, 311
BceAI ACGGC 4 cut(s) 82, 259, 304, 314
BciT130I CCWGG 1 cut(s) 391
BcnI CCSGG 5 cut(s) 361, 433, 529, 530, 552
BcoDI GTCTC 3 cut(s) 178, 301, 337
BisI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
BlsI GCNGC 9 cut(s) 7, 10, 112, 248, 251, 397, 415, 676, 693
Bme1390I CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
Bme18I GGWCC 1 cut(s) 600
BmeT110I CYCGRG 2 cut(s) 528, 695
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 4 cut(s) 363, 393, 600, 826
BmiI GGNNCC 4 cut(s) 70, 430, 470, 601
BmrFI CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
BmsI GCATC 2 cut(s) 192, 592
BpiI GAAGAC 2 cut(s) 31, 887
BpmI CTGGAG 1 cut(s) 262
BpuMI CCSGG 5 cut(s) 361, 433, 529, 530, 552
BsaHI GRCGYC 4 cut(s) 27, 132, 147, 321
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 5 cut(s) 241, 286, 390, 528, 675
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 6 cut(s) 210, 240, 371, 401, 546, 576
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse118I RCCGGY 4 cut(s) 11, 128, 169, 670
Bse1I ACTGG 1 cut(s) 470
Bse3DI GCAATG 1 cut(s) 829
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 5 cut(s) 241, 286, 390, 528, 675
BseGI GGATG 4 cut(s) 72, 583, 850, 862
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 829
BseMII CTCAG 1 cut(s) 677
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 3 cut(s) 218, 265, 782
BseX3I CGGCCG 1 cut(s) 672
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
Bsh1285I CGRYCG 3 cut(s) 339, 543, 675
BshFI GGCC 5 cut(s) 5, 364, 395, 674, 828
BshNI GGYRCC 1 cut(s) 68
BshTI ACCGGT 1 cut(s) 169
BsiEI CGRYCG 3 cut(s) 339, 543, 675
BsiHKCI CYCGRG 2 cut(s) 528, 695
BsiSI CCGG 8 cut(s) 12, 129, 170, 361, 432, 529, 552, 671
BslFI GGGAC 3 cut(s) 176, 511, 613
BslI CCNNNNNNNGG 1 cut(s) 593
BsmAI GTCTC 3 cut(s) 178, 301, 337
BsmBI CGTCTC 2 cut(s) 301, 337
BsmFI GGGAC 3 cut(s) 176, 511, 613
BsnI GGCC 5 cut(s) 5, 364, 395, 674, 828
Bso31I GGTCTC 1 cut(s) 178
BsoBI CYCGRG 2 cut(s) 528, 695
Bsp143I GATC 6 cut(s) 16, 137, 439, 536, 682, 733
BspANI GGCC 5 cut(s) 5, 364, 395, 674, 828
BspCNI CTCAG 1 cut(s) 678
BspFNI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
BspLI GGNNCC 4 cut(s) 70, 430, 470, 601
BspPI GGATC 5 cut(s) 132, 447, 544, 690, 741
BspQI GCTCTTC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 829
BsrFI RCCGGY 4 cut(s) 11, 128, 169, 670
BsrI ACTGG 1 cut(s) 470
BssAI RCCGGY 4 cut(s) 11, 128, 169, 670
BssECI CCNNGG 5 cut(s) 241, 286, 390, 528, 675
BssMI GATC 6 cut(s) 16, 137, 439, 536, 682, 733
BssNI GRCGYC 4 cut(s) 27, 132, 147, 321
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 746
Bst6I CTCTTC 5 cut(s) 236, 316, 356, 749, 773
BstACI GRCGYC 4 cut(s) 27, 132, 147, 321
BstC8I GCNNGC 6 cut(s) 13, 181, 260, 376, 672, 864
BstDEI CTNAG 1 cut(s) 686
BstDSI CCRYGG 3 cut(s) 241, 286, 675
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 4 cut(s) 72, 583, 850, 862
BstFNI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 6 cut(s) 19, 140, 442, 539, 685, 736
BstMAI GTCTC 3 cut(s) 178, 301, 337
BstMBI GATC 6 cut(s) 16, 137, 439, 536, 682, 733
BstMCI CGRYCG 3 cut(s) 339, 543, 675
BstMWI GCNNNNNNNGC 4 cut(s) 51, 255, 419, 492
BstNI CCWGG 1 cut(s) 391
BstNSI RCATGY 2 cut(s) 262, 899
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 6 cut(s) 359, 389, 431, 527, 528, 550
BstUI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
BstV2I GAAGAC 2 cut(s) 31, 887
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BstZI CGGCCG 1 cut(s) 672
BsuRI GGCC 5 cut(s) 5, 364, 395, 674, 828
BtgI CCRYGG 3 cut(s) 241, 286, 675
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 4 cut(s) 72, 583, 850, 862
Cac8I GCNNGC 6 cut(s) 13, 181, 260, 376, 672, 864
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 4 cut(s) 11, 128, 169, 670
Cfr13I GGNCC 4 cut(s) 363, 393, 600, 826
Cfr42I CCGCGG 1 cut(s) 678
Cfr9I CCCGGG 1 cut(s) 528
CseI GACGC 2 cut(s) 43, 121
Csp6I GTAC 2 cut(s) 343, 457
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 4 cut(s) 86, 259, 628, 896
CviQI GTAC 2 cut(s) 343, 457
DdeI CTNAG 1 cut(s) 686
DpnI GATC 6 cut(s) 18, 139, 441, 538, 684, 735
DpnII GATC 6 cut(s) 16, 137, 439, 536, 682, 733
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 2 cut(s) 3, 672
EagI CGGCCG 1 cut(s) 672
Eam1104I CTCTTC 5 cut(s) 236, 316, 356, 749, 773
EarI CTCTTC 5 cut(s) 236, 316, 356, 749, 773
EciI GGCGGA 5 cut(s) 166, 190, 256, 304, 740
EclXI CGGCCG 1 cut(s) 672
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 600
Eco52I CGGCCG 1 cut(s) 672
Eco57I CTGAAG 2 cut(s) 686, 794
Eco88I CYCGRG 2 cut(s) 528, 695
Eco91I GGTNACC 1 cut(s) 546
EcoO65I GGTNACC 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 389
Esp3I CGTCTC 2 cut(s) 301, 337
FaeI CATG 4 cut(s) 89, 262, 631, 899
FaiI YATR 7 cut(s) 87, 260, 368, 509, 629, 762, 897
FaqI GGGAC 3 cut(s) 176, 511, 613
FatI CATG 4 cut(s) 85, 258, 627, 895
FauI CCCGC 5 cut(s) 188, 379, 479, 490, 590
Fnu4HI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
FokI GGATG 4 cut(s) 59, 570, 857, 869
Fsp4HI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
GlaI GCGC 1 cut(s) 496
GluI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
GsaI CCCAGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 5 cut(s) 5, 364, 395, 674, 828
HapII CCGG 8 cut(s) 12, 129, 170, 361, 432, 529, 552, 671
HgaI GACGC 2 cut(s) 43, 121
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 4 cut(s) 27, 132, 147, 321
Hin1II CATG 4 cut(s) 89, 262, 631, 899
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HinfI GANTC 3 cut(s) 348, 386, 574
HpaII CCGG 8 cut(s) 12, 129, 170, 361, 432, 529, 552, 671
HphI GGTGA 3 cut(s) 115, 142, 889
Hpy166II GTNNAC 2 cut(s) 58, 241
Hpy188I TCNGA 5 cut(s) 25, 137, 439, 536, 687
Hpy188III TCNNGA 2 cut(s) 279, 355
Hpy8I GTNNAC 2 cut(s) 58, 241
Hpy99I CGWCG 6 cut(s) 29, 32, 119, 323, 326, 329
HpyAV CCTTC 7 cut(s) 103, 280, 638, 700, 724, 802, 817
HpyCH4III ACNGT 1 cut(s) 746
HpyCH4IV ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
HpyCH4V TGCA 3 cut(s) 258, 262, 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 255, 419, 492
HpyF3I CTNAG 1 cut(s) 686
HpySE526I ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
Hsp92I GRCGYC 4 cut(s) 27, 132, 147, 321
Hsp92II CATG 4 cut(s) 89, 262, 631, 899
HspAI GCGC 1 cut(s) 495
KroI GCCGGC 2 cut(s) 11, 670
KroNI GCCGGC 2 cut(s) 13, 672
KspI CCGCGG 1 cut(s) 678
Kzo9I GATC 6 cut(s) 16, 137, 439, 536, 682, 733
LguI GCTCTTC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 769
LweI GCATC 2 cut(s) 192, 592
MaeII ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
MaeIII GTNAC 2 cut(s) 148, 546
MalI GATC 6 cut(s) 18, 139, 441, 538, 684, 735
MbiI CCGCTC 1 cut(s) 398
MboI GATC 6 cut(s) 16, 137, 439, 536, 682, 733
MboII GAAGA 9 cut(s) 31, 40, 223, 303, 343, 766, 787, 790, 892
MflI RGATCY 1 cut(s) 682
MlyI GAGTC 2 cut(s) 342, 380
MmeI TCCRAC 3 cut(s) 48, 417, 514
MroNI GCCGGC 2 cut(s) 11, 670
MslI CAYNNNNRTG 2 cut(s) 521, 843
MspA1I CMGCKG 2 cut(s) 8, 677
MspI CCGG 8 cut(s) 12, 129, 170, 361, 432, 529, 552, 671
MspR9I CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
MwoI GCNNNNNNNGC 4 cut(s) 51, 255, 419, 492
NaeI GCCGGC 2 cut(s) 13, 672
NciI CCSGG 5 cut(s) 361, 433, 529, 530, 552
NdeII GATC 6 cut(s) 16, 137, 439, 536, 682, 733
NgoMIV GCCGGC 2 cut(s) 11, 670
NlaIII CATG 4 cut(s) 89, 262, 631, 899
NlaIV GGNNCC 4 cut(s) 70, 430, 470, 601
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 2 cut(s) 262, 899
OliI CACNNNNGTG 1 cut(s) 521
PaeI GCATGC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 4 cut(s) 33, 327, 459, 600
PdiI GCCGGC 2 cut(s) 13, 672
PfeI GAWTC 1 cut(s) 574
PflFI GACNNNGTC 1 cut(s) 323
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 9 cut(s) 7, 10, 112, 248, 251, 397, 415, 676, 693
PleI GAGTC 2 cut(s) 342, 380
PpsI GAGTC 2 cut(s) 342, 380
Psp6I CCWGG 1 cut(s) 389
PspEI GGTNACC 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 4 cut(s) 70, 430, 470, 601
PspPI GGNCC 4 cut(s) 363, 393, 600, 826
PsuI RGATCY 1 cut(s) 682
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 2 cut(s) 344, 458
RsaNI GTAC 2 cut(s) 343, 457
RseI CAYNNNNRTG 2 cut(s) 521, 843
SacII CCGCGG 1 cut(s) 678
SapI GCTCTTC 1 cut(s) 316
SatI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
Sau3AI GATC 6 cut(s) 16, 137, 439, 536, 682, 733
Sau96I GGNCC 4 cut(s) 363, 393, 600, 826
SchI GAGTC 2 cut(s) 342, 380
ScrFI CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
SetI ASST 9 cut(s) 30, 39, 123, 150, 240, 297, 324, 711, 774
SfaNI GCATC 2 cut(s) 192, 592
Sfr303I CCGCGG 1 cut(s) 678
SgrAI CRCCGGYG 1 cut(s) 128
SgrBI CCGCGG 1 cut(s) 678
SinI GGWCC 1 cut(s) 600
SmaI CCCGGG 1 cut(s) 530
SmiMI CAYNNNNRTG 2 cut(s) 521, 843
SphI GCATGC 1 cut(s) 262
StyD4I CCNGG 6 cut(s) 359, 389, 431, 527, 528, 550
TaaI ACNGT 1 cut(s) 746
TaiI ACGT 6 cut(s) 30, 39, 150, 240, 297, 324
TaqI TCGA 3 cut(s) 30, 96, 339
TaqII GACCGA 3 cut(s) 325, 529, 617
TauI GCSGC 8 cut(s) 8, 113, 249, 252, 398, 416, 677, 694
TfiI GAWTC 1 cut(s) 574
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 5 cut(s) 469, 644, 657, 821, 827
TspGWI ACGGA 2 cut(s) 360, 441
TspMI CCCGGG 1 cut(s) 528
Tth111I GACNNNGTC 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 600
XceI RCATGY 2 cut(s) 262, 899
XmaI CCCGGG 1 cut(s) 528
ZraI GACGTC 3 cut(s) 28, 148, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.