Rh6CG086400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003936
Physical Location & Seq
Reverse (-)
9443260 .. 9443538
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG086400.1

Sequence Viewer

Length: 279 bp
ATGTCCCGGGTCGGGTCGGTCGGGTTACCCGAAGCGAAAGTGGTCGGGGCAATACTTGTGCATCCCTACTTTGGTGGGACTGTTCATGATAAGATGTGGTTGTACATGAATAAGGAGAATGAAGGGTTGCAGGATAGGAGGCTGGTACCGGCCACAGAGGATCTTCGGCATCTTGGGTGTGAGAGGGTGTTGGTGTTTTTGGCGGAGATCGATGGACCATTTGAAGGGTGGCGGGAAGAGGTATGTGGAGGAGATAAAGAAGAGTGGGTGGAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

92

Amino Acids

10.48

Weight (kDa)

4.84

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 145
AciI CCGC 2 cut(s) 203, 232
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 150
AfaI GTAC 2 cut(s) 104, 147
AfiI CCNNNNNNNGG 3 cut(s) 12, 71, 224
AgsI TTSAA 1 cut(s) 224
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 1 cut(s) 150
Asp718I GGTACC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 2 cut(s) 7, 8
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 145
BccI CCATC 1 cut(s) 206
BcnI CCSGG 2 cut(s) 7, 8
Bme1390I CCNGG 2 cut(s) 7, 8
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 7, 8
BmsI GCATC 2 cut(s) 70, 178
BpuMI CCSGG 2 cut(s) 7, 8
Bsa29I ATCGAT 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 71, 224
Bse118I RCCGGY 1 cut(s) 148
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 3 cut(s) 12, 71, 224
BseRI GAGGAG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 2 cut(s) 7, 149
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 3 cut(s) 12, 71, 224
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 6
Bsp1407I TGTACA 1 cut(s) 102
Bsp143I GATC 2 cut(s) 160, 207
BspACI CCGC 2 cut(s) 203, 232
BspANI GGCC 1 cut(s) 152
BspDI ATCGAT 1 cut(s) 210
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 148
BsrGI TGTACA 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 160, 207
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 231, 255
BstAUI TGTACA 1 cut(s) 102
BstEII GGTNACC 1 cut(s) 24
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 163, 210
BstMBI GATC 2 cut(s) 160, 207
BstMCI CGRYCG 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 5, 6
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 210
BtsCI GGATG 1 cut(s) 61
CciI TCATGA 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 215
Cfr9I CCCGGG 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 2 cut(s) 103, 146
CviAII CATG 2 cut(s) 86, 106
CviJI RGCY 2 cut(s) 142, 152
CviKI_1 RGCY 2 cut(s) 142, 152
CviQI GTAC 2 cut(s) 103, 146
DpnI GATC 2 cut(s) 162, 209
DpnII GATC 2 cut(s) 160, 207
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 231, 255
EarI CTCTTC 2 cut(s) 231, 255
EciI GGCGGA 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 6
Eco91I GGTNACC 1 cut(s) 24
EcoO65I GGTNACC 1 cut(s) 24
FaeI CATG 2 cut(s) 89, 109
FaiI YATR 3 cut(s) 87, 107, 244
FaqI GGGAC 1 cut(s) 91
FatI CATG 2 cut(s) 85, 105
FauI CCCGC 1 cut(s) 225
FokI GGATG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 152
HapII CCGG 2 cut(s) 7, 149
Hin1II CATG 2 cut(s) 89, 109
HpaII CCGG 2 cut(s) 7, 149
Hpy188III TCNNGA 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 116, 218
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 61, 130
Hsp92II CATG 2 cut(s) 89, 109
KpnI GGTACC 1 cut(s) 149
Kzo9I GATC 2 cut(s) 160, 207
LpnPI CCDG 4 cut(s) 20, 116, 128, 162
LweI GCATC 2 cut(s) 70, 178
MaeIII GTNAC 1 cut(s) 24
MalI GATC 2 cut(s) 162, 209
MboI GATC 2 cut(s) 160, 207
MboII GAAGA 3 cut(s) 155, 248, 272
MflI RGATCY 1 cut(s) 160
MnlI CCTC 5 cut(s) 132, 151, 177, 232, 242
MspI CCGG 2 cut(s) 7, 149
MspR9I CCNGG 2 cut(s) 7, 8
NciI CCSGG 2 cut(s) 7, 8
NdeII GATC 2 cut(s) 160, 207
NlaIII CATG 2 cut(s) 89, 109
NlaIV GGNNCC 1 cut(s) 147
PagI TCATGA 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 2 cut(s) 104, 147
RsaNI GTAC 2 cut(s) 103, 146
Sau3AI GATC 2 cut(s) 160, 207
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 7, 8
SetI ASST 1 cut(s) 243
SfaNI GCATC 2 cut(s) 70, 178
SinI GGWCC 1 cut(s) 215
SmaI CCCGGG 1 cut(s) 8
SsiI CCGC 2 cut(s) 203, 232
StyD4I CCNGG 2 cut(s) 5, 6
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 210
TaqII GACCGA 1 cut(s) 7
TatI WGTACW 1 cut(s) 102
TspDTI ATGAA 3 cut(s) 74, 122, 135
TspMI CCCGGG 1 cut(s) 6
VpaK11BI GGWCC 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XmaI CCCGGG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.