Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004926.1

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

30218 .. 30490

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004926.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgagggaacatagcgctggagggaacacagcgcacactttgatgtcccgggtcgggtcggtcgggttatccggagcgaaagtggtcggggcaatccttgtgcatccctactttggtgggactgttcacgataagatgtggctgtacatgaataaggagaatgaagggttgcaggataggaggctggtaccggccacagaggatcttcggcatcttgggtgtgagagggtgttggtgtttttggcggagatcgatggaccatttgaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

90

Amino Acids

9.9

Weight (kDa)

6.17

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	187
AccB1I	GGYRCC	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	2 cut(s)	146, 189
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	54, 113
AgsI	TTSAA	1 cut(s)	266
AlwI	GGATC	1 cut(s)	210
Ama87I	CYCGRG	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	71
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	1 cut(s)	192
Asp718I	GGTACC	1 cut(s)	187
AspLEI	GCGC	2 cut(s)	17, 34
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	2 cut(s)	49, 50
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	187
BccI	CCATC	1 cut(s)	248
BcnI	CCSGG	2 cut(s)	49, 50
BfoI	RGCGCY	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	49, 50
Bme18I	GGWCC	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	49, 50
BmsI	GCATC	2 cut(s)	112, 220
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	49, 50
Bsa29I	ATCGAT	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 113
Bse118I	RCCGGY	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	54, 113
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	187
BshVI	ATCGAT	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	3 cut(s)	49, 72, 191
BslFI	GGGAC	2 cut(s)	31, 133
BslI	CCNNNNNNNGG	2 cut(s)	54, 113
BsmFI	GGGAC	2 cut(s)	31, 133
BsnI	GGCC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	48
Bsp13I	TCCGGA	1 cut(s)	71
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	202, 249
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	194
BspDI	ATCGAT	1 cut(s)	252
BspEI	TCCGGA	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	190
BsrGI	TGTACA	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	202, 249
Bst4CI	ACNGT	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 34
BstKTI	GATC	2 cut(s)	205, 252
BstMBI	GATC	2 cut(s)	202, 249
BstMCI	CGRYCG	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	47, 48
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	103
CfoI	GCGC	2 cut(s)	17, 34
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	257
Cfr9I	CCCGGG	1 cut(s)	48
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	145, 188
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	3 cut(s)	142, 184, 194
CviKI_1	RGCY	3 cut(s)	142, 184, 194
CviQI	GTAC	2 cut(s)	145, 188
DpnI	GATC	2 cut(s)	204, 251
DpnII	GATC	2 cut(s)	202, 249
EaeI	YGGCCR	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	257
Eco47III	AGCGCT	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	48
FaeI	CATG	1 cut(s)	151
FaiI	YATR	2 cut(s)	12, 149
FaqI	GGGAC	2 cut(s)	31, 133
FatI	CATG	1 cut(s)	147
FokI	GGATG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	16, 33
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	3 cut(s)	49, 72, 191
HhaI	GCGC	2 cut(s)	17, 34
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	2 cut(s)	15, 32
HinP1I	GCGC	2 cut(s)	15, 32
HpaII	CCGG	3 cut(s)	49, 72, 191
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	72, 128
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	103, 172
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	2 cut(s)	15, 32
Kpn2I	TCCGGA	1 cut(s)	71
KpnI	GGTACC	1 cut(s)	191
Kzo9I	GATC	2 cut(s)	202, 249
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	6 cut(s)	3, 62, 85, 158, 170, 204
LweI	GCATC	2 cut(s)	112, 220
MalI	GATC	2 cut(s)	204, 251
MboI	GATC	2 cut(s)	202, 249
MboII	GAAGA	1 cut(s)	197
MflI	RGATCY	1 cut(s)	202
MnlI	CCTC	4 cut(s)	14, 174, 193, 219
MroI	TCCGGA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	3 cut(s)	49, 72, 191
MspR9I	CCNGG	2 cut(s)	49, 50
NciI	CCSGG	2 cut(s)	49, 50
NdeII	GATC	2 cut(s)	202, 249
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	2 cut(s)	146, 189
RsaNI	GTAC	2 cut(s)	145, 188
RseI	CAYNNNNRTG	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	202, 249
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	49, 50
SfaNI	GCATC	2 cut(s)	112, 220
SinI	GGWCC	1 cut(s)	257
SmaI	CCCGGG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	41
SsiI	CCGC	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	47, 48
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	49
TatI	WGTACW	1 cut(s)	144
TspDTI	ATGAA	2 cut(s)	164, 177
TspMI	CCCGGG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	257
XmaI	CCCGGG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.