Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

9448889 .. 9450042

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG086500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCCGCCGCCGGCGATCACTCCGACGTCGAACACGTCTTCCGCTTCTTCCGCGTCCACAAAGACGGCACCATCCACCGAACCCATCCCTCCTTCGACAAAATCCCAGCCGTCGACGACCTCACCACCGGCGTCCGATCCAAAGACGTCACCATCTCCACCGACCCACCCGTCTCCGCCCGCATCTTCGTCCCCAAATCCGCCGACCCGGCCCGAAAGCTCCCCCTCTTCTTCTACGTCCACGGCGGCGGCTTCTGCATGCATTCCGCCTTCTCCTCCACCTACCACGGCTACGTCTCCACCATCTGCTCCTCCGCCGACGTCATCGCCGTCTCGGTCGAGTACGGACTCTTCCCGACCCGACCCATACCCGCTTGCTACGAGGACTCCTGGGCCGCTCTCCAATGGGTCGCGGCTCACGCGAACGGAACCGGGTCGGATCAATGGCTAAACGAGTACGCCGACTTGAACCGCGTGTTCATCGGCGGGGACAGCGCGGGAGGGAACATAACACACACTCTGGTGTCCCGGGTCGGGTCGGTCGGGTTACCCGGAGTGAAAGTGGTGGGGGCGATTCTGGCGCATCCCTACTTCGGCGGGACCGACGATGATAAGATGTGGCTGTATATAAACAAGGAGAATGAAGGGTTGCAGGATAGGAGGTTGAAGCCTGCCGCGGAGGATCTGGGGCGGCTTGGGTGTGAGAAGGTGTTGGTGTTTGTGGCGGAGAAGGACCATTTGAACGGAGTGGGGAAAAGCTATGTGGAGGAGCTGAAGAAGAGTGGGTGGAAAGGGAGTGTGGAGATGAAGGAGAATAAAGGGAAGGACCATTGCTTTCATTTGGGAGAACCCAAGGATGAACAGGCTGTGGATTTGTTGAAGACAGTATGTTCTTTCATTAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

302

Amino Acids

33.0

Weight (kDa)

6.15

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	62 - 171	2.5e-09	BD-FAE
COesterase	PF00135	62 - 177	6.8e-08	Carboxylesterase family
Abhydrolase_3	PF07859	78 - 280	6.6e-38	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	3 cut(s)	30, 150, 324
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	6 cut(s)	54, 413, 422, 474, 497, 677
AclWI	GGATC	3 cut(s)	132, 447, 690
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	794
AcyI	GRCGYC	4 cut(s)	27, 132, 147, 321
AfaI	GTAC	2 cut(s)	344, 458
AfiI	CCNNNNNNNGG	2 cut(s)	534, 593
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	469, 667, 742, 880
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	389
AleI	CACNNNNGTG	1 cut(s)	521
AloI	GAACNNNNNNTCC	2 cut(s)	24, 56
AluBI	AGCT	3 cut(s)	220, 759, 772
AluI	AGCT	3 cut(s)	220, 759, 772
Alw26I	GTCTC	3 cut(s)	178, 301, 337
AlwI	GGATC	3 cut(s)	132, 447, 690
Ama87I	CYCGRG	1 cut(s)	528
AoxI	GGCC	3 cut(s)	3, 210, 393
AseI	ATTAAT	1 cut(s)	900
AspLEI	GCGC	2 cut(s)	497, 583
AspS9I	GGNCC	5 cut(s)	211, 393, 600, 733, 826
AsuC2I	CCSGG	5 cut(s)	209, 433, 529, 530, 552
AsuHPI	GGTGA	2 cut(s)	115, 142
AvaI	CYCGRG	1 cut(s)	528
AvaII	GGWCC	3 cut(s)	600, 733, 826
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BbsI	GAAGAC	2 cut(s)	31, 887
BccI	CCATC	4 cut(s)	80, 93, 161, 311
BceAI	ACGGC	5 cut(s)	82, 95, 259, 304, 314
BciT130I	CCWGG	1 cut(s)	391
BcnI	CCSGG	5 cut(s)	209, 433, 529, 530, 552
BcoDI	GTCTC	3 cut(s)	178, 301, 337
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	8 cut(s)	6, 9, 247, 250, 396, 414, 675, 692
BlsI	GCNGC	8 cut(s)	7, 10, 248, 251, 397, 415, 676, 693
Bme1390I	CCNGG	6 cut(s)	209, 391, 433, 529, 530, 552
Bme18I	GGWCC	3 cut(s)	600, 733, 826
BmeT110I	CYCGRG	1 cut(s)	528
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	5 cut(s)	211, 393, 600, 733, 826
BmiI	GGNNCC	3 cut(s)	70, 430, 601
BmrFI	CCNGG	6 cut(s)	209, 391, 433, 529, 530, 552
BmsI	GCATC	2 cut(s)	192, 592
BpiI	GAAGAC	2 cut(s)	31, 887
BpuMI	CCSGG	5 cut(s)	209, 433, 529, 530, 552
BsaHI	GRCGYC	4 cut(s)	27, 132, 147, 321
BsaJI	CCNNGG	6 cut(s)	241, 286, 390, 528, 675, 852
BsaXI	ACNNNNNCTCC	4 cut(s)	371, 401, 546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 593
Bse118I	RCCGGY	2 cut(s)	11, 128
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	6 cut(s)	241, 286, 390, 528, 675, 852
BseGI	GGATG	4 cut(s)	72, 85, 583, 862
BseLI	CCNNNNNNNGG	2 cut(s)	534, 593
BseMI	GCAATG	1 cut(s)	829
BseRI	GAGGAG	3 cut(s)	265, 301, 782
BseYI	CCCAGC	1 cut(s)	106
Bsh1236I	CGCG	6 cut(s)	54, 413, 422, 474, 497, 677
Bsh1285I	CGRYCG	2 cut(s)	339, 543
BshFI	GGCC	3 cut(s)	5, 212, 395
BshNI	GGYRCC	1 cut(s)	68
BsiEI	CGRYCG	2 cut(s)	339, 543
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	6 cut(s)	12, 129, 209, 432, 529, 552
BslFI	GGGAC	4 cut(s)	176, 503, 511, 613
BslI	CCNNNNNNNGG	2 cut(s)	534, 593
BsmAI	GTCTC	3 cut(s)	178, 301, 337
BsmBI	CGTCTC	3 cut(s)	178, 301, 337
BsmFI	GGGAC	4 cut(s)	176, 503, 511, 613
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	5, 212, 395
BsoBI	CYCGRG	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	16, 137, 439, 682
BspANI	GGCC	3 cut(s)	5, 212, 395
BspFNI	CGCG	6 cut(s)	54, 413, 422, 474, 497, 677
BspLI	GGNNCC	3 cut(s)	70, 430, 601
BspPI	GGATC	3 cut(s)	132, 447, 690
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	829
BsrFI	RCCGGY	2 cut(s)	11, 128
BssAI	RCCGGY	2 cut(s)	11, 128
BssECI	CCNNGG	6 cut(s)	241, 286, 390, 528, 675, 852
BssMI	GATC	4 cut(s)	16, 137, 439, 682
BssNI	GRCGYC	4 cut(s)	27, 132, 147, 321
BssT1I	CCWWGG	1 cut(s)	852
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	886
Bst6I	CTCTTC	3 cut(s)	233, 356, 773
BstACI	GRCGYC	4 cut(s)	27, 132, 147, 321
BstC8I	GCNNGC	5 cut(s)	13, 181, 260, 376, 672
BstDSI	CCRYGG	3 cut(s)	241, 286, 675
BstEII	GGTNACC	1 cut(s)	546
BstF5I	GGATG	4 cut(s)	72, 85, 583, 862
BstFNI	CGCG	6 cut(s)	54, 413, 422, 474, 497, 677
BstHHI	GCGC	2 cut(s)	497, 583
BstKTI	GATC	4 cut(s)	19, 140, 442, 685
BstMAI	GTCTC	3 cut(s)	178, 301, 337
BstMBI	GATC	4 cut(s)	16, 137, 439, 682
BstMCI	CGRYCG	2 cut(s)	339, 543
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 209, 255, 419, 492, 578
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	1 cut(s)	262
BstPI	GGTNACC	1 cut(s)	546
BstSCI	CCNGG	6 cut(s)	207, 389, 431, 527, 528, 550
BstUI	CGCG	6 cut(s)	54, 413, 422, 474, 497, 677
BstV2I	GAAGAC	2 cut(s)	31, 887
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BsuRI	GGCC	3 cut(s)	5, 212, 395
BtgI	CCRYGG	3 cut(s)	241, 286, 675
BtgZI	GCGATG	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	4 cut(s)	72, 85, 583, 862
Cac8I	GCNNGC	5 cut(s)	13, 181, 260, 376, 672
CfoI	GCGC	2 cut(s)	497, 583
Cfr10I	RCCGGY	2 cut(s)	11, 128
Cfr13I	GGNCC	5 cut(s)	211, 393, 600, 733, 826
Cfr42I	CCGCGG	1 cut(s)	678
Cfr9I	CCCGGG	1 cut(s)	528
CseI	GACGC	2 cut(s)	43, 121
Csp6I	GTAC	2 cut(s)	343, 457
CviAII	CATG	1 cut(s)	259
CviQI	GTAC	2 cut(s)	343, 457
DpnI	GATC	4 cut(s)	18, 139, 441, 684
DpnII	GATC	4 cut(s)	16, 137, 439, 682
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	233, 356, 773
EarI	CTCTTC	3 cut(s)	233, 356, 773
EciI	GGCGGA	5 cut(s)	166, 190, 256, 304, 740
Eco130I	CCWWGG	1 cut(s)	852
Eco47I	GGWCC	3 cut(s)	600, 733, 826
Eco57I	CTGAAG	1 cut(s)	794
Eco88I	CYCGRG	1 cut(s)	528
Eco91I	GGTNACC	1 cut(s)	546
EcoO65I	GGTNACC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	852
EcoT22I	ATGCAT	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	852
Esp3I	CGTCTC	3 cut(s)	178, 301, 337
FaeI	CATG	1 cut(s)	262
FaiI	YATR	8 cut(s)	260, 368, 509, 627, 629, 762, 889, 907
FaqI	GGGAC	4 cut(s)	176, 503, 511, 613
FatI	CATG	1 cut(s)	258
FauI	CCCGC	5 cut(s)	188, 379, 479, 490, 590
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	8 cut(s)	6, 9, 247, 250, 396, 414, 675, 692
FokI	GGATG	4 cut(s)	59, 72, 570, 869
Fsp4HI	GCNGC	8 cut(s)	6, 9, 247, 250, 396, 414, 675, 692
GlaI	GCGC	2 cut(s)	496, 582
GluI	GCNGC	8 cut(s)	6, 9, 247, 250, 396, 414, 675, 692
GsaI	CCCAGC	1 cut(s)	110
HaeIII	GGCC	3 cut(s)	5, 212, 395
HapII	CCGG	6 cut(s)	12, 129, 209, 432, 529, 552
HgaI	GACGC	2 cut(s)	43, 121
HhaI	GCGC	2 cut(s)	497, 583
Hin1I	GRCGYC	4 cut(s)	27, 132, 147, 321
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	2 cut(s)	495, 581
HinP1I	GCGC	2 cut(s)	495, 581
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	348, 386, 574
HpaII	CCGG	6 cut(s)	12, 129, 209, 432, 529, 552
HphI	GGTGA	2 cut(s)	115, 142
Hpy166II	GTNNAC	3 cut(s)	58, 115, 241
Hpy188I	TCNGA	3 cut(s)	25, 137, 439
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	3 cut(s)	58, 115, 241
Hpy99I	CGWCG	6 cut(s)	29, 32, 116, 119, 323, 608
HpyAV	CCTTC	7 cut(s)	103, 280, 638, 700, 724, 802, 817
HpyCH4III	ACNGT	1 cut(s)	886
HpyCH4IV	ACGT	6 cut(s)	27, 36, 147, 237, 294, 321
HpyCH4V	TGCA	3 cut(s)	258, 262, 652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 209, 255, 419, 492, 578
HpySE526I	ACGT	6 cut(s)	27, 36, 147, 237, 294, 321
Hsp92I	GRCGYC	4 cut(s)	27, 132, 147, 321
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	2 cut(s)	495, 581
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
KspI	CCGCGG	1 cut(s)	678
Kzo9I	GATC	4 cut(s)	16, 137, 439, 682
LmnI	GCTCC	3 cut(s)	225, 314, 769
LweI	GCATC	2 cut(s)	192, 592
MaeII	ACGT	6 cut(s)	27, 36, 147, 237, 294, 321
MaeIII	GTNAC	2 cut(s)	148, 546
MalI	GATC	4 cut(s)	18, 139, 441, 684
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	4 cut(s)	16, 137, 439, 682
MboII	GAAGA	9 cut(s)	31, 40, 178, 220, 223, 343, 787, 790, 892
MflI	RGATCY	1 cut(s)	682
MluCI	AATT	1 cut(s)	901
MlyI	GAGTC	2 cut(s)	342, 380
MmeI	TCCRAC	2 cut(s)	48, 417
Mph1103I	ATGCAT	1 cut(s)	264
MreI	CGCCGGCG	1 cut(s)	11
MroNI	GCCGGC	1 cut(s)	11
MseI	TTAA	1 cut(s)	900
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	6 cut(s)	12, 129, 209, 432, 529, 552
MspR9I	CCNGG	6 cut(s)	209, 391, 433, 529, 530, 552
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	6 cut(s)	54, 413, 422, 474, 497, 677
MwoI	GCNNNNNNNGC	6 cut(s)	51, 209, 255, 419, 492, 578
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	5 cut(s)	209, 433, 529, 530, 552
NdeII	GATC	4 cut(s)	16, 137, 439, 682
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	3 cut(s)	70, 430, 601
NmuCI	GTSAC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 327, 459, 600
PctI	GAATGC	1 cut(s)	262
PdiI	GCCGGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	574
PkrI	GCNGC	8 cut(s)	7, 10, 248, 251, 397, 415, 676, 693
PleI	GAGTC	2 cut(s)	342, 380
PpsI	GAGTC	2 cut(s)	342, 380
PshBI	ATTAAT	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	546
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	70, 430, 601
PspPI	GGNCC	5 cut(s)	211, 393, 600, 733, 826
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	2 cut(s)	344, 458
RsaNI	GTAC	2 cut(s)	343, 457
RseI	CAYNNNNRTG	1 cut(s)	521
SacII	CCGCGG	1 cut(s)	678
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	900
SatI	GCNGC	8 cut(s)	6, 9, 247, 250, 396, 414, 675, 692
Sau3AI	GATC	4 cut(s)	16, 137, 439, 682
Sau96I	GGNCC	5 cut(s)	211, 393, 600, 733, 826
SchI	GAGTC	2 cut(s)	342, 380
ScrFI	CCNGG	6 cut(s)	209, 391, 433, 529, 530, 552
SfaNI	GCATC	2 cut(s)	192, 592
Sfr303I	CCGCGG	1 cut(s)	678
SgrAI	CRCCGGYG	2 cut(s)	11, 128
SgrBI	CCGCGG	1 cut(s)	678
SgrDI	CGTCGACG	1 cut(s)	113
SinI	GGWCC	3 cut(s)	600, 733, 826
SmaI	CCCGGG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	262
Sse9I	AATT	1 cut(s)	901
StyD4I	CCNGG	6 cut(s)	207, 389, 431, 527, 528, 550
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	1 cut(s)	886
TaiI	ACGT	6 cut(s)	30, 39, 150, 240, 297, 324
TaqI	TCGA	4 cut(s)	30, 96, 114, 339
TaqII	GACCGA	3 cut(s)	325, 529, 617
TasI	AATT	1 cut(s)	901
TauI	GCSGC	8 cut(s)	8, 11, 249, 252, 398, 416, 677, 694
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	1 cut(s)	900
Tru9I	TTAA	1 cut(s)	900
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	7 cut(s)	469, 657, 821, 827, 873, 886, 894
TspGWI	ACGGA	3 cut(s)	360, 441, 759
TspMI	CCCGGG	1 cut(s)	528
VpaK11BI	GGWCC	3 cut(s)	600, 733, 826
VspI	ATTAAT	1 cut(s)	900
XceI	RCATGY	1 cut(s)	262
XmaI	CCCGGG	1 cut(s)	528
XmiI	GTMKAC	1 cut(s)	114
ZraI	GACGTC	3 cut(s)	28, 148, 322
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.