Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

55150437 .. 55154411

Gene Structure 3975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCAAAGACCAGCATTGAATCTCCGCATAAATCCACACCGCACTAACCCAGTAAAACATTCTCAATCAATCACTCACCCACCACCAACACCACTCTCTCTACCATTTCTGCCATGGCCGCCGCCGGCGATCACTCCGACGTCGAACACGTCTTCCGCTTCTTCCGTGTCCACAAAGACGGCACCATCCACCGAACCCACCCCTCCTTCGATAAAATCCCAGCCTCCGACGACCTCACCACCGGCGTCCGATCCAAAGACGTCACCATCTCCACCGACCCACCCGTCTCCGCCCGCATCTTCGTCCCCAAATCCGCTGACCCGGCCCGAAAGCTCCCTCCTCTTCTACGTCCACGGCGGCGGCTTCTGCATGCAGTCCGCCTTCTCCTCCACCTACCACGGCTACGTCTCCACCATCTGCTCTTACGCTGACGTCATCGCCGTCTCGGTCGAGTACGGACTCTTCCCGACCCGGCCCATACCCGCTTGCTACGAGGACTCCTGGGCCGCCCTCCAATGGGTCGCGACTCACGCCAACGGAACCGGGTCGGATCAATGGCTAAACGACTACGCCGACTTGAACCGAGTGTTCATCGGCGGGGACAGCGCGGGAGGGAACATAACACACACTCTGGTGTCCCGGGTCGGGTCGGTCGGGCTACCCGGAGTGAAAGTGGTGGGGGCGATTCTGTCGCATCCCTACTTCGGCGGGACCGACGATGATAAGATGTGGCTTTACATAAACAAGGAGAATGAAGGGTTGCAGGATAGGAGGCTGAAGCCGGCCGCGGAGGATCTGGGGCGGCTCGGGTGTGAGAAGGTGCTGGTGTTTGTGGCGGAGCTGGATCATTTGAACGGTGTGGGGAAGAGTTATGTGGAGGAGCTGAAGAAGAGTGGGTGGAATGGGAGTGTGGAGATGAAGGAGAATAAGGGGAAGGACCATTGCTTTCATTTGCATGACACAAAGGATGAGCAGGCTGTGGATTTGCTGAAGACAGTATGTTCTTTCATTAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

339

Amino Acids

36.54

Weight (kDa)

6.34

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	110 - 208	6.7e-08	BD-FAE
Abhydrolase_3	PF07859	114 - 317	8.3e-38	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	283
AatII	GACGTC	3 cut(s)	143, 263, 435
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	3 cut(s)	524, 608, 788
AclWI	GGATC	4 cut(s)	245, 558, 801, 852
AcoI	YGGCCR	2 cut(s)	116, 783
AcuI	CTGAAG	3 cut(s)	797, 905, 1010
AcyI	GRCGYC	4 cut(s)	140, 245, 260, 432
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	4 cut(s)	516, 517, 645, 704
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	19, 580, 853
AjiI	CACGTC	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	500
AleI	CACNNNNGTG	1 cut(s)	632
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	3 cut(s)	333, 841, 883
AluI	AGCT	3 cut(s)	333, 841, 883
Alw26I	GTCTC	3 cut(s)	291, 412, 448
AlwI	GGATC	4 cut(s)	245, 558, 801, 852
Ama87I	CYCGRG	2 cut(s)	639, 806
AoxI	GGCC	5 cut(s)	116, 323, 473, 504, 783
AseI	ATTAAT	1 cut(s)	1011
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	5 cut(s)	324, 474, 504, 711, 937
AsuC2I	CCSGG	6 cut(s)	322, 472, 544, 640, 641, 663
AsuHPI	GGTGA	3 cut(s)	68, 228, 255
AvaI	CYCGRG	2 cut(s)	639, 806
AvaII	GGWCC	2 cut(s)	711, 937
BanI	GGYRCC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
BbsI	GAAGAC	2 cut(s)	144, 998
BccI	CCATC	3 cut(s)	193, 274, 422
BceAI	ACGGC	4 cut(s)	195, 370, 415, 425
BciT130I	CCWGG	1 cut(s)	502
BcnI	CCSGG	6 cut(s)	322, 472, 544, 640, 641, 663
BcoDI	GTCTC	3 cut(s)	291, 412, 448
BisI	GCNGC	7 cut(s)	119, 122, 358, 361, 507, 786, 803
BlsI	GCNGC	7 cut(s)	120, 123, 359, 362, 508, 787, 804
Bme1390I	CCNGG	7 cut(s)	322, 472, 502, 544, 640, 641, 663
Bme18I	GGWCC	2 cut(s)	711, 937
BmeT110I	CYCGRG	2 cut(s)	639, 806
BmgBI	CACGTC	1 cut(s)	150
BmgT120I	GGNCC	5 cut(s)	324, 474, 504, 711, 937
BmiI	GGNNCC	3 cut(s)	183, 541, 712
BmrFI	CCNGG	7 cut(s)	322, 472, 502, 544, 640, 641, 663
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	2 cut(s)	305, 703
BmuI	ACTGGG	1 cut(s)	44
BpiI	GAAGAC	2 cut(s)	144, 998
BpuMI	CCSGG	6 cut(s)	322, 472, 544, 640, 641, 663
BsaHI	GRCGYC	4 cut(s)	140, 245, 260, 432
BsaJI	CCNNGG	6 cut(s)	113, 352, 397, 501, 639, 786
BsaXI	ACNNNNNCTCC	4 cut(s)	482, 512, 657, 687
Bsc4I	CCNNNNNNNGG	4 cut(s)	516, 517, 645, 704
Bse118I	RCCGGY	3 cut(s)	124, 241, 781
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	940
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	6 cut(s)	113, 352, 397, 501, 639, 786
BseGI	GGATG	3 cut(s)	185, 694, 973
BseLI	CCNNNNNNNGG	4 cut(s)	516, 517, 645, 704
BseMI	GCAATG	1 cut(s)	940
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	3 cut(s)	329, 376, 893
BseX3I	CGGCCG	1 cut(s)	783
BseYI	CCCAGC	1 cut(s)	219
Bsh1236I	CGCG	3 cut(s)	524, 608, 788
Bsh1285I	CGRYCG	3 cut(s)	450, 654, 786
BshFI	GGCC	5 cut(s)	118, 325, 475, 506, 785
BshNI	GGYRCC	1 cut(s)	181
BsiEI	CGRYCG	3 cut(s)	450, 654, 786
BsiHKCI	CYCGRG	2 cut(s)	639, 806
BsiSI	CCGG	8 cut(s)	125, 242, 322, 472, 543, 640, 663, 782
BslFI	GGGAC	4 cut(s)	289, 614, 622, 724
BslI	CCNNNNNNNGG	4 cut(s)	516, 517, 645, 704
BsmAI	GTCTC	3 cut(s)	291, 412, 448
BsmBI	CGTCTC	3 cut(s)	291, 412, 448
BsmFI	GGGAC	4 cut(s)	289, 614, 622, 724
BsnI	GGCC	5 cut(s)	118, 325, 475, 506, 785
BsoBI	CYCGRG	2 cut(s)	639, 806
Bsp143I	GATC	5 cut(s)	129, 250, 550, 793, 844
Bsp19I	CCATGG	1 cut(s)	113
Bsp68I	TCGCGA	1 cut(s)	524
BspANI	GGCC	5 cut(s)	118, 325, 475, 506, 785
BspFNI	CGCG	3 cut(s)	524, 608, 788
BspLI	GGNNCC	3 cut(s)	183, 541, 712
BspPI	GGATC	4 cut(s)	245, 558, 801, 852
BspT107I	GGYRCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	940
BsrFI	RCCGGY	3 cut(s)	124, 241, 781
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	3 cut(s)	124, 241, 781
BssECI	CCNNGG	6 cut(s)	113, 352, 397, 501, 639, 786
BssMI	GATC	5 cut(s)	129, 250, 550, 793, 844
BssNI	GRCGYC	4 cut(s)	140, 245, 260, 432
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	857, 997
Bst6I	CTCTTC	4 cut(s)	347, 467, 860, 884
BstACI	GRCGYC	4 cut(s)	140, 245, 260, 432
BstC8I	GCNNGC	6 cut(s)	126, 294, 371, 487, 783, 975
BstDSI	CCRYGG	4 cut(s)	113, 352, 397, 786
BstF5I	GGATG	3 cut(s)	185, 694, 973
BstFNI	CGCG	3 cut(s)	524, 608, 788
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	5 cut(s)	132, 253, 553, 796, 847
BstMAI	GTCTC	3 cut(s)	291, 412, 448
BstMBI	GATC	5 cut(s)	129, 250, 550, 793, 844
BstMCI	CGRYCG	3 cut(s)	450, 654, 786
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 322, 366, 530, 603
BstNI	CCWGG	1 cut(s)	502
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	7 cut(s)	320, 470, 500, 542, 638, 639, 661
BstUI	CGCG	3 cut(s)	524, 608, 788
BstV2I	GAAGAC	2 cut(s)	144, 998
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
BstZI	CGGCCG	1 cut(s)	783
BsuRI	GGCC	5 cut(s)	118, 325, 475, 506, 785
BtgI	CCRYGG	4 cut(s)	113, 352, 397, 786
BtgZI	GCGATG	1 cut(s)	421
BtrI	CACGTC	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	185, 694, 973
BtuMI	TCGCGA	1 cut(s)	524
Cac8I	GCNNGC	6 cut(s)	126, 294, 371, 487, 783, 975
CfoI	GCGC	1 cut(s)	608
Cfr10I	RCCGGY	3 cut(s)	124, 241, 781
Cfr13I	GGNCC	5 cut(s)	324, 474, 504, 711, 937
Cfr42I	CCGCGG	1 cut(s)	789
Cfr9I	CCCGGG	1 cut(s)	639
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	3 cut(s)	114, 370, 956
CviQI	GTAC	1 cut(s)	454
DpnI	GATC	5 cut(s)	131, 252, 552, 795, 846
DpnII	GATC	5 cut(s)	129, 250, 550, 793, 844
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
EaeI	YGGCCR	2 cut(s)	116, 783
EagI	CGGCCG	1 cut(s)	783
Eam1104I	CTCTTC	4 cut(s)	347, 467, 860, 884
EarI	CTCTTC	4 cut(s)	347, 467, 860, 884
EciI	GGCGGA	3 cut(s)	279, 367, 851
EclXI	CGGCCG	1 cut(s)	783
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	711, 937
Eco52I	CGGCCG	1 cut(s)	783
Eco57I	CTGAAG	3 cut(s)	797, 905, 1010
Eco88I	CYCGRG	2 cut(s)	639, 806
EcoRII	CCWGG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
Esp3I	CGTCTC	3 cut(s)	291, 412, 448
FaeI	CATG	3 cut(s)	117, 373, 959
FaqI	GGGAC	4 cut(s)	289, 614, 622, 724
FatI	CATG	3 cut(s)	113, 369, 955
FauI	CCCGC	5 cut(s)	301, 490, 590, 601, 701
Fnu4HI	GCNGC	7 cut(s)	119, 122, 358, 361, 507, 786, 803
FokI	GGATG	3 cut(s)	172, 681, 980
Fsp4HI	GCNGC	7 cut(s)	119, 122, 358, 361, 507, 786, 803
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	7 cut(s)	119, 122, 358, 361, 507, 786, 803
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	5 cut(s)	118, 325, 475, 506, 785
HapII	CCGG	8 cut(s)	125, 242, 322, 472, 543, 640, 663, 782
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	608
Hin1I	GRCGYC	4 cut(s)	140, 245, 260, 432
Hin1II	CATG	3 cut(s)	117, 373, 959
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HinfI	GANTC	5 cut(s)	19, 459, 497, 526, 685
HpaII	CCGG	8 cut(s)	125, 242, 322, 472, 543, 640, 663, 782
HphI	GGTGA	3 cut(s)	68, 228, 255
Hpy166II	GTNNAC	2 cut(s)	171, 352
Hpy188I	TCNGA	4 cut(s)	138, 228, 250, 550
Hpy188III	TCNNGA	2 cut(s)	466, 523
Hpy8I	GTNNAC	2 cut(s)	171, 352
Hpy99I	CGWCG	4 cut(s)	142, 145, 232, 719
HpyAV	CCTTC	6 cut(s)	216, 391, 749, 811, 913, 928
HpyCH4III	ACNGT	2 cut(s)	857, 997
HpyCH4IV	ACGT	6 cut(s)	140, 149, 260, 348, 405, 432
HpyCH4V	TGCA	5 cut(s)	4, 369, 373, 763, 955
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 322, 366, 530, 603
HpySE526I	ACGT	6 cut(s)	140, 149, 260, 348, 405, 432
Hsp92I	GRCGYC	4 cut(s)	140, 245, 260, 432
Hsp92II	CATG	3 cut(s)	117, 373, 959
HspAI	GCGC	1 cut(s)	606
KroI	GCCGGC	2 cut(s)	124, 781
KroNI	GCCGGC	2 cut(s)	126, 783
KspI	CCGCGG	1 cut(s)	789
Kzo9I	GATC	5 cut(s)	129, 250, 550, 793, 844
LmnI	GCTCC	3 cut(s)	338, 838, 880
LweI	GCATC	2 cut(s)	305, 703
MaeII	ACGT	6 cut(s)	140, 149, 260, 348, 405, 432
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	5 cut(s)	131, 252, 552, 795, 846
MboI	GATC	5 cut(s)	129, 250, 550, 793, 844
MboII	GAAGA	9 cut(s)	144, 153, 291, 334, 454, 877, 898, 901, 1003
MflI	RGATCY	1 cut(s)	793
MluCI	AATT	1 cut(s)	1012
MlyI	GAGTC	3 cut(s)	453, 491, 520
MmeI	TCCRAC	3 cut(s)	161, 251, 528
MreI	CGCCGGCG	1 cut(s)	124
MroNI	GCCGGC	2 cut(s)	124, 781
MseI	TTAA	1 cut(s)	1011
MslI	CAYNNNNRTG	2 cut(s)	632, 954
MspA1I	CMGCKG	2 cut(s)	316, 788
MspI	CCGG	8 cut(s)	125, 242, 322, 472, 543, 640, 663, 782
MspR9I	CCNGG	7 cut(s)	322, 472, 502, 544, 640, 641, 663
MvaI	CCWGG	1 cut(s)	502
MvnI	CGCG	3 cut(s)	524, 608, 788
MwoI	GCNNNNNNNGC	5 cut(s)	118, 322, 366, 530, 603
NaeI	GCCGGC	2 cut(s)	126, 783
NciI	CCSGG	6 cut(s)	322, 472, 544, 640, 641, 663
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	5 cut(s)	129, 250, 550, 793, 844
NgoMIV	GCCGGC	2 cut(s)	124, 781
NlaIII	CATG	3 cut(s)	117, 373, 959
NlaIV	GGNNCC	3 cut(s)	183, 541, 712
NmuCI	GTSAC	1 cut(s)	261
NruI	TCGCGA	1 cut(s)	524
NspI	RCATGY	1 cut(s)	373
OliI	CACNNNNGTG	1 cut(s)	632
PaeI	GCATGC	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	4 cut(s)	146, 438, 570, 711
PdiI	GCCGGC	2 cut(s)	126, 783
PfeI	GAWTC	2 cut(s)	19, 685
PkrI	GCNGC	7 cut(s)	120, 123, 359, 362, 508, 787, 804
PleI	GAGTC	3 cut(s)	453, 491, 520
PpsI	GAGTC	3 cut(s)	453, 491, 520
PshBI	ATTAAT	1 cut(s)	1011
Psp6I	CCWGG	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	3 cut(s)	183, 541, 712
PspPI	GGNCC	5 cut(s)	324, 474, 504, 711, 937
PsuI	RGATCY	1 cut(s)	793
RruI	TCGCGA	1 cut(s)	524
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	2 cut(s)	632, 954
SacII	CCGCGG	1 cut(s)	789
SaqAI	TTAA	1 cut(s)	1011
SatI	GCNGC	7 cut(s)	119, 122, 358, 361, 507, 786, 803
Sau3AI	GATC	5 cut(s)	129, 250, 550, 793, 844
Sau96I	GGNCC	5 cut(s)	324, 474, 504, 711, 937
SchI	GAGTC	3 cut(s)	453, 491, 520
ScrFI	CCNGG	7 cut(s)	322, 472, 502, 544, 640, 641, 663
SfaNI	GCATC	2 cut(s)	305, 703
Sfr303I	CCGCGG	1 cut(s)	789
SgrAI	CRCCGGYG	2 cut(s)	124, 241
SgrBI	CCGCGG	1 cut(s)	789
SinI	GGWCC	2 cut(s)	711, 937
SmaI	CCCGGG	1 cut(s)	641
SmiMI	CAYNNNNRTG	2 cut(s)	632, 954
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	1 cut(s)	1012
StyD4I	CCNGG	7 cut(s)	320, 470, 500, 542, 638, 639, 661
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	857, 997
TaiI	ACGT	6 cut(s)	143, 152, 263, 351, 408, 435
TaqI	TCGA	3 cut(s)	143, 209, 450
TaqII	GACCGA	3 cut(s)	436, 640, 728
TasI	AATT	1 cut(s)	1012
TauI	GCSGC	7 cut(s)	121, 124, 360, 363, 509, 788, 805
TfiI	GAWTC	2 cut(s)	19, 685
Tru1I	TTAA	1 cut(s)	1011
Tru9I	TTAA	1 cut(s)	1011
TseFI	GTSAC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	6 cut(s)	580, 768, 932, 938, 997, 1005
TspGWI	ACGGA	3 cut(s)	154, 471, 552
TspMI	CCCGGG	1 cut(s)	639
VpaK11BI	GGWCC	2 cut(s)	711, 937
VspI	ATTAAT	1 cut(s)	1011
XceI	RCATGY	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	111
XmaI	CCCGGG	1 cut(s)	639
ZraI	GACGTC	3 cut(s)	141, 261, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.