Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008229.1

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

21121 .. 22416

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008229.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atggccgccgccgccgatcactccgacgtcgaactcgagtttcgcttcttccgcgtccacaaagacggcaccatccaccgaacccatccccacattgacaaagtcccaccctccgacgaccggaccaccgagatccgatccaaagacgtcgccatctcaaccgacccacccatctccgcccgcattttcctacccaactccgtcgaccctacccggaagctccccctcctcctctacctccacggcggcggcttctgcttcgagtcgccctgctcctccacctaccacaactacgtctccaccgtcgctgcttccgccaacgtcatcgccgtctcagtcgagtacggtctcttcccgacccggcccattcccgcttgctacgacgactcctgggccgccctccaatgggtcgggacgcatgcggacaaaaccgggtcggagccgtggctaaacgactacgccgacttgacccgcgtcttcgtcggcggggatagcgctggagggaacatagcgcacactttgatgtcccgggtcgggtcggtcgggttaccaggagcgaaagtggtcggggcaatacttgtgcatccctactttggtgggactgatgatgataagatgtggctgtacatgaataaggagaatgaagggttgcaggataggaggctggtaccggccgcacaggatcttcggcatcttgggtgtgagagggtgttggtgtttttggcggagatggaccatttgaagggtggcgggaagaggtatgtggaggagctagagaagagtggcttatcaataaggctgacaacggcgatggacttctccgacgacatgaacgaccaaggttccaccacggccatggatgtagacgacatcgacgcactcgatatctttgacagcgatgcgtcatcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

303

Amino Acids

33.17

Weight (kDa)

4.93

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	30, 150
Acc65I	GGTACC	1 cut(s)	667
AccB1I	GGYRCC	2 cut(s)	68, 667
AccI	GTMKAC	2 cut(s)	204, 864
AccII	CGCG	2 cut(s)	54, 474
AclWI	GGATC	3 cut(s)	127, 132, 690
AcoI	YGGCCR	3 cut(s)	3, 672, 852
AcyI	GRCGYC	2 cut(s)	27, 147
AfaI	GTAC	3 cut(s)	344, 626, 669
AfeI	AGCGCT	1 cut(s)	496
AfiI	CCNNNNNNNGG	6 cut(s)	120, 405, 406, 534, 593, 742
AgsI	TTSAA	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	389, 550
AluBI	AGCT	2 cut(s)	220, 772
AluI	AGCT	2 cut(s)	220, 772
Alw26I	GTCTC	3 cut(s)	301, 337, 353
AlwI	GGATC	3 cut(s)	127, 132, 690
Ama87I	CYCGRG	2 cut(s)	35, 528
Aor51HI	AGCGCT	1 cut(s)	496
AoxI	GGCC	5 cut(s)	3, 362, 393, 672, 852
ApeKI	GCWGC	1 cut(s)	308
Asp718I	GGTACC	1 cut(s)	667
AspLEI	GCGC	2 cut(s)	497, 514
AspS9I	GGNCC	4 cut(s)	123, 363, 393, 733
AsuC2I	CCSGG	5 cut(s)	214, 361, 433, 529, 530
AvaI	CYCGRG	2 cut(s)	35, 528
AvaII	GGWCC	2 cut(s)	123, 733
BanI	GGYRCC	2 cut(s)	68, 667
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BbsI	GAAGAC	1 cut(s)	469
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	6 cut(s)	80, 93, 161, 179, 724, 805
BceAI	ACGGC	6 cut(s)	82, 259, 314, 427, 822, 867
BciT130I	CCWGG	2 cut(s)	391, 552
BcnI	CCSGG	5 cut(s)	214, 361, 433, 529, 530
BcoDI	GTCTC	3 cut(s)	301, 337, 353
BfaI	CTAG	1 cut(s)	773
BfoI	RGCGCY	1 cut(s)	498
BisI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
BlsI	GCNGC	8 cut(s)	7, 10, 13, 248, 251, 310, 397, 676
Bme1390I	CCNGG	7 cut(s)	214, 361, 391, 433, 529, 530, 552
Bme18I	GGWCC	2 cut(s)	123, 733
BmeT110I	CYCGRG	2 cut(s)	35, 528
BmgT120I	GGNCC	4 cut(s)	123, 363, 393, 733
BmiI	GGNNCC	4 cut(s)	70, 441, 669, 844
BmrFI	CCNGG	7 cut(s)	214, 361, 391, 433, 529, 530, 552
BmsI	GCATC	3 cut(s)	592, 700, 889
BoxI	GACNNNNGTC	1 cut(s)	473
BpiI	GAAGAC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	519
BpuMI	CCSGG	5 cut(s)	214, 361, 433, 529, 530
BsaHI	GRCGYC	2 cut(s)	27, 147
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	7 cut(s)	241, 390, 443, 528, 838, 849, 855
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	6 cut(s)	281, 311, 371, 401, 546, 576
Bsc4I	CCNNNNNNNGG	6 cut(s)	120, 405, 406, 534, 593, 742
Bse118I	RCCGGY	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	391, 552
BseDI	CCNNGG	7 cut(s)	241, 390, 443, 528, 838, 849, 855
BseGI	GGATG	4 cut(s)	72, 85, 583, 865
BseLI	CCNNNNNNNGG	6 cut(s)	120, 405, 406, 534, 593, 742
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	4 cut(s)	218, 221, 265, 782
BseX3I	CGGCCG	1 cut(s)	672
BseXI	GCAGC	1 cut(s)	295
Bsh1236I	CGCG	2 cut(s)	54, 474
Bsh1285I	CGRYCG	3 cut(s)	121, 543, 675
BshFI	GGCC	5 cut(s)	5, 364, 395, 674, 854
BshNI	GGYRCC	2 cut(s)	68, 667
BsiEI	CGRYCG	3 cut(s)	121, 543, 675
BsiHKCI	CYCGRG	2 cut(s)	35, 528
BsiSI	CCGG	6 cut(s)	121, 214, 361, 432, 529, 671
BslFI	GGGAC	4 cut(s)	89, 427, 511, 613
BslI	CCNNNNNNNGG	6 cut(s)	120, 405, 406, 534, 593, 742
BsmAI	GTCTC	3 cut(s)	301, 337, 353
BsmBI	CGTCTC	2 cut(s)	301, 337
BsmFI	GGGAC	4 cut(s)	89, 427, 511, 613
BsnI	GGCC	5 cut(s)	5, 364, 395, 674, 854
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	2 cut(s)	35, 528
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	16, 132, 137, 682
Bsp19I	CCATGG	1 cut(s)	855
BspANI	GGCC	5 cut(s)	5, 364, 395, 674, 854
BspCNI	CTCAG	1 cut(s)	347
BspFNI	CGCG	2 cut(s)	54, 474
BspLI	GGNNCC	4 cut(s)	70, 441, 669, 844
BspPI	GGATC	3 cut(s)	127, 132, 690
BspT107I	GGYRCC	2 cut(s)	68, 667
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	670
BsrGI	TGTACA	1 cut(s)	624
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	7 cut(s)	241, 390, 443, 528, 838, 849, 855
BssMI	GATC	4 cut(s)	16, 132, 137, 682
BssNI	GRCGYC	2 cut(s)	27, 147
BssT1I	CCWWGG	2 cut(s)	838, 855
Bst2UI	CCWGG	2 cut(s)	391, 552
Bst4CI	ACNGT	2 cut(s)	304, 347
Bst6I	CTCTTC	3 cut(s)	356, 749, 773
BstACI	GRCGYC	2 cut(s)	27, 147
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	3 cut(s)	181, 376, 420
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	4 cut(s)	241, 443, 849, 855
BstEII	GGTNACC	1 cut(s)	546
BstF5I	GGATG	4 cut(s)	72, 85, 583, 865
BstFNI	CGCG	2 cut(s)	54, 474
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	2 cut(s)	497, 514
BstKTI	GATC	4 cut(s)	19, 135, 140, 685
BstMAI	GTCTC	3 cut(s)	301, 337, 353
BstMBI	GATC	4 cut(s)	16, 132, 137, 682
BstMCI	CGRYCG	3 cut(s)	121, 543, 675
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 51, 255, 314, 492
BstNI	CCWGG	2 cut(s)	391, 552
BstNSI	RCATGY	1 cut(s)	422
BstPAI	GACNNNNGTC	1 cut(s)	473
BstPI	GGTNACC	1 cut(s)	546
BstSCI	CCNGG	7 cut(s)	212, 359, 389, 431, 527, 528, 550
BstUI	CGCG	2 cut(s)	54, 474
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	132, 682
BstXI	CCANNNNNNTGG	1 cut(s)	856
BstYI	RGATCY	2 cut(s)	132, 682
BstZI	CGGCCG	1 cut(s)	672
BsuRI	GGCC	5 cut(s)	5, 364, 395, 674, 854
BtgI	CCRYGG	4 cut(s)	241, 443, 849, 855
BtgZI	GCGATG	2 cut(s)	310, 824
BtsCI	GGATG	4 cut(s)	72, 85, 583, 865
Cac8I	GCNNGC	3 cut(s)	181, 376, 420
CfoI	GCGC	2 cut(s)	497, 514
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	4 cut(s)	123, 363, 393, 733
Cfr9I	CCCGGG	1 cut(s)	528
CseI	GACGC	5 cut(s)	43, 424, 463, 884, 891
Csp6I	GTAC	3 cut(s)	343, 625, 668
CviAII	CATG	4 cut(s)	419, 628, 829, 856
CviQI	GTAC	3 cut(s)	343, 625, 668
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	4 cut(s)	18, 134, 139, 684
DpnII	GATC	4 cut(s)	16, 132, 137, 682
EaeI	YGGCCR	3 cut(s)	3, 672, 852
EagI	CGGCCG	1 cut(s)	672
Eam1104I	CTCTTC	3 cut(s)	356, 749, 773
EarI	CTCTTC	3 cut(s)	356, 749, 773
EciI	GGCGGA	3 cut(s)	166, 304, 740
EclXI	CGGCCG	1 cut(s)	672
Eco130I	CCWWGG	2 cut(s)	838, 855
Eco31I	GGTCTC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	886
Eco47I	GGWCC	2 cut(s)	123, 733
Eco47III	AGCGCT	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	672
Eco88I	CYCGRG	2 cut(s)	35, 528
Eco91I	GGTNACC	1 cut(s)	546
EcoO65I	GGTNACC	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	389, 550
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	2 cut(s)	838, 855
ErhI	CCWWGG	2 cut(s)	838, 855
Esp3I	CGTCTC	2 cut(s)	301, 337
FaeI	CATG	4 cut(s)	422, 631, 832, 859
FaiI	YATR	6 cut(s)	420, 509, 629, 762, 830, 857
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FaqI	GGGAC	4 cut(s)	89, 427, 511, 613
FatI	CATG	4 cut(s)	418, 627, 828, 855
FauI	CCCGC	5 cut(s)	188, 379, 479, 479, 743
FblI	GTMKAC	2 cut(s)	204, 864
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
FokI	GGATG	4 cut(s)	59, 72, 570, 872
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
FspBI	CTAG	1 cut(s)	773
GlaI	GCGC	2 cut(s)	496, 513
GluI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	5 cut(s)	5, 364, 395, 674, 854
HapII	CCGG	6 cut(s)	121, 214, 361, 432, 529, 671
HgaI	GACGC	5 cut(s)	43, 424, 463, 884, 891
HhaI	GCGC	2 cut(s)	497, 514
Hin1I	GRCGYC	2 cut(s)	27, 147
Hin1II	CATG	4 cut(s)	422, 631, 832, 859
Hin6I	GCGC	2 cut(s)	495, 512
HinP1I	GCGC	2 cut(s)	495, 512
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	263, 386
HpaII	CCGG	6 cut(s)	121, 214, 361, 432, 529, 671
Hpy166II	GTNNAC	3 cut(s)	58, 205, 865
Hpy188I	TCNGA	5 cut(s)	25, 115, 137, 439, 823
Hpy188III	TCNNGA	2 cut(s)	355, 412
Hpy8I	GTNNAC	3 cut(s)	58, 205, 865
HpyAV	CCTTC	2 cut(s)	638, 736
HpyCH4III	ACNGT	2 cut(s)	304, 347
HpyCH4IV	ACGT	4 cut(s)	27, 147, 294, 321
HpyCH4V	TGCA	2 cut(s)	583, 652
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 51, 255, 314, 492
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	4 cut(s)	27, 147, 294, 321
Hsp92I	GRCGYC	2 cut(s)	27, 147
Hsp92II	CATG	4 cut(s)	422, 631, 832, 859
HspAI	GCGC	2 cut(s)	495, 512
KpnI	GGTACC	1 cut(s)	671
Kzo9I	GATC	4 cut(s)	16, 132, 137, 682
LmnI	GCTCC	5 cut(s)	225, 278, 439, 554, 769
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	3 cut(s)	592, 700, 889
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	4 cut(s)	27, 147, 294, 321
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	4 cut(s)	18, 134, 139, 684
MboI	GATC	4 cut(s)	16, 132, 137, 682
MboII	GAAGA	6 cut(s)	40, 343, 469, 677, 766, 790
MflI	RGATCY	2 cut(s)	132, 682
MlyI	GAGTC	2 cut(s)	272, 380
MmeI	TCCRAC	4 cut(s)	48, 138, 417, 846
MslI	CAYNNNNRTG	2 cut(s)	521, 854
MspI	CCGG	6 cut(s)	121, 214, 361, 432, 529, 671
MspR9I	CCNGG	7 cut(s)	214, 361, 391, 433, 529, 530, 552
MvaI	CCWGG	2 cut(s)	391, 552
MvnI	CGCG	2 cut(s)	54, 474
MwoI	GCNNNNNNNGC	5 cut(s)	11, 51, 255, 314, 492
NciI	CCSGG	5 cut(s)	214, 361, 433, 529, 530
NcoI	CCATGG	1 cut(s)	855
NdeII	GATC	4 cut(s)	16, 132, 137, 682
NlaIII	CATG	4 cut(s)	422, 631, 832, 859
NlaIV	GGNNCC	4 cut(s)	70, 441, 669, 844
NspI	RCATGY	1 cut(s)	422
PaeI	GCATGC	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	6 cut(s)	33, 300, 327, 459, 831, 879
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	8 cut(s)	7, 10, 13, 248, 251, 310, 397, 676
PleI	GAGTC	2 cut(s)	271, 380
PpsI	GAGTC	2 cut(s)	271, 380
PshAI	GACNNNNGTC	1 cut(s)	473
Psp6I	CCWGG	2 cut(s)	389, 550
PspEI	GGTNACC	1 cut(s)	546
PspGI	CCWGG	2 cut(s)	389, 550
PspN4I	GGNNCC	4 cut(s)	70, 441, 669, 844
PspPI	GGNCC	4 cut(s)	123, 363, 393, 733
PspXI	VCTCGAGB	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	132, 682
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	3 cut(s)	344, 626, 669
RsaNI	GTAC	3 cut(s)	343, 625, 668
RseI	CAYNNNNRTG	2 cut(s)	521, 854
SalI	GTCGAC	1 cut(s)	203
SatI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
Sau3AI	GATC	4 cut(s)	16, 132, 137, 682
Sau96I	GGNCC	4 cut(s)	123, 363, 393, 733
SchI	GAGTC	2 cut(s)	272, 380
ScrFI	CCNGG	7 cut(s)	214, 361, 391, 433, 529, 530, 552
SfaNI	GCATC	3 cut(s)	592, 700, 889
Sfr274I	CTCGAG	1 cut(s)	35
SinI	GGWCC	2 cut(s)	123, 733
SlaI	CTCGAG	1 cut(s)	35
SmaI	CCCGGG	1 cut(s)	530
SmiMI	CAYNNNNRTG	2 cut(s)	521, 854
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SphI	GCATGC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	7 cut(s)	212, 359, 389, 431, 527, 528, 550
StyI	CCWWGG	2 cut(s)	838, 855
TaaI	ACNGT	2 cut(s)	304, 347
TaiI	ACGT	4 cut(s)	30, 150, 297, 324
TaqI	TCGA	7 cut(s)	30, 36, 204, 261, 339, 873, 882
TaqII	GACCGA	1 cut(s)	529
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	7 cut(s)	8, 11, 14, 249, 252, 398, 677
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	644, 657, 845
TspGWI	ACGGA	1 cut(s)	190
TspMI	CCCGGG	1 cut(s)	528
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	123, 733
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	2 cut(s)	743, 853
XhoI	CTCGAG	1 cut(s)	35
XmaI	CCCGGG	1 cut(s)	528
XmiI	GTMKAC	2 cut(s)	204, 864
XspI	CTAG	1 cut(s)	773
ZraI	GACGTC	2 cut(s)	28, 148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.