RLG00000014616

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003936
Physical Location & Seq
Forward (+)
55492027 .. 55492782
756 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014616

Sequence Viewer

Length: 756 bp
ATGGCCGCCGCCGGCGATCACTCCGACGTCGAACACGTCTTCCGCCTCTTCCGTGTTCACAAAGACGGCACCATCCACCGAACCCACCCCTCCTTCGACAAAATCCCAGCCGCCGACGACCTTACCACCGGCGTCCGATCCAAAGACGTCACCATCTCCACCGACCCACCAGTCTCCGCCCGCATCTTCGTCCCCAAATCCGCCGACCCGACCCGAAAACTCCCCCTCCTCTTCTACGTCCACGGCGGCGGCTTCTGCATGCAGTCCGCCTTCTCCTCCATCTTCCACGGCTACGTCTCCACCATCTGCTCTTCCGCCGACGTCATCGCCGTCTCGGTCGAGTACGGACTCTTCCCGACCCGGCCCATACCCGCTTGCTACGAGGACTCCTGGGCCGCTCTCCAATGGGTCGCGGCTCACGCGAACGGAACCGGGTCGGATCAATGGCTAAACGAGTACGCCGACTGGAACCGCGTGTTCATCGGCGGGGAAAGCTCGGGAGGGAACATAACACACACTCTGGTGTCCCGGGTCGGATCGGTCGGGTTACCTGGAGTGAAAATGGTGGGGGCGATTCTATCGCATCCCTACTTCGGCGGGACCGATGATGATAAGATGTGGCTTTACATGAACAAGGAGAATGAAGGGTTGCAGGATAGGAGGCTGAAGCCGGCCGCGGAGGATCTGTGGCGGCTCGGGTGTGAAAAGGTGTTGGTGTTTGTGGCGGAGAAGGATCGTTTTAACGGAGTGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

252

Amino Acids

27.49

Weight (kDa)

6.04

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 62 - 171 1.3e-09 BD-FAE
COesterase PF00135 62 - 177 4.9e-08 Carboxylesterase family
Abhydrolase_3 PF07859 77 - 205 7.4e-30 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 3 cut(s) 30, 150, 324
AccB1I GGYRCC 1 cut(s) 68
AccBSI CCGCTC 1 cut(s) 398
AccII CGCG 4 cut(s) 413, 422, 474, 677
AclWI GGATC 5 cut(s) 132, 447, 544, 690, 741
AcoI YGGCCR 2 cut(s) 3, 672
AcuI CTGAAG 1 cut(s) 686
AcyI GRCGYC 4 cut(s) 27, 132, 147, 321
AfaI GTAC 2 cut(s) 344, 458
AfiI CCNNNNNNNGG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 34
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 2 cut(s) 389, 550
AleI CACNNNNGTG 1 cut(s) 521
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 1 cut(s) 495
AluI AGCT 1 cut(s) 495
Alw26I GTCTC 3 cut(s) 178, 301, 337
AlwI GGATC 5 cut(s) 132, 447, 544, 690, 741
Ama87I CYCGRG 3 cut(s) 496, 528, 695
AoxI GGCC 4 cut(s) 3, 362, 393, 672
AspS9I GGNCC 3 cut(s) 363, 393, 600
AsuC2I CCSGG 4 cut(s) 361, 433, 529, 530
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 3 cut(s) 496, 528, 695
AvaII GGWCC 1 cut(s) 600
BanI GGYRCC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 1 cut(s) 31
BccI CCATC 4 cut(s) 80, 161, 287, 311
BceAI ACGGC 4 cut(s) 82, 259, 304, 314
BciT130I CCWGG 2 cut(s) 391, 552
BcnI CCSGG 4 cut(s) 361, 433, 529, 530
BcoDI GTCTC 3 cut(s) 178, 301, 337
BisI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
BlsI GCNGC 9 cut(s) 7, 10, 112, 248, 251, 397, 415, 676, 693
Bme1390I CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
Bme18I GGWCC 1 cut(s) 600
BmeT110I CYCGRG 3 cut(s) 496, 528, 695
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 3 cut(s) 363, 393, 600
BmiI GGNNCC 4 cut(s) 70, 430, 470, 601
BmrFI CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
BmsI GCATC 2 cut(s) 192, 592
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 573
BpuMI CCSGG 4 cut(s) 361, 433, 529, 530
BsaHI GRCGYC 4 cut(s) 27, 132, 147, 321
BsaJI CCNNGG 5 cut(s) 241, 286, 390, 528, 675
BsaXI ACNNNNNCTCC 6 cut(s) 210, 240, 371, 401, 671, 701
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse118I RCCGGY 3 cut(s) 11, 128, 670
Bse1I ACTGG 2 cut(s) 170, 470
BseBI CCWGG 2 cut(s) 391, 552
BseDI CCNNGG 5 cut(s) 241, 286, 390, 528, 675
BseGI GGATG 2 cut(s) 72, 583
BseLI CCNNNNNNNGG 1 cut(s) 593
BseNI ACTGG 2 cut(s) 170, 470
BseRI GAGGAG 2 cut(s) 218, 265
BseX3I CGGCCG 1 cut(s) 672
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 4 cut(s) 413, 422, 474, 677
Bsh1285I CGRYCG 3 cut(s) 339, 543, 675
BshFI GGCC 4 cut(s) 5, 364, 395, 674
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 3 cut(s) 339, 543, 675
BsiHKCI CYCGRG 3 cut(s) 496, 528, 695
BsiSI CCGG 6 cut(s) 12, 129, 361, 432, 529, 671
BslFI GGGAC 3 cut(s) 176, 511, 613
BslI CCNNNNNNNGG 1 cut(s) 593
BsmAI GTCTC 3 cut(s) 178, 301, 337
BsmBI CGTCTC 2 cut(s) 301, 337
BsmFI GGGAC 3 cut(s) 176, 511, 613
BsnI GGCC 4 cut(s) 5, 364, 395, 674
BsoBI CYCGRG 3 cut(s) 496, 528, 695
Bsp143I GATC 6 cut(s) 16, 137, 439, 536, 682, 733
BspANI GGCC 4 cut(s) 5, 364, 395, 674
BspFNI CGCG 4 cut(s) 413, 422, 474, 677
BspLI GGNNCC 4 cut(s) 70, 430, 470, 601
BspPI GGATC 5 cut(s) 132, 447, 544, 690, 741
BspQI GCTCTTC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 398
BsrFI RCCGGY 3 cut(s) 11, 128, 670
BsrI ACTGG 2 cut(s) 170, 470
BssAI RCCGGY 3 cut(s) 11, 128, 670
BssECI CCNNGG 5 cut(s) 241, 286, 390, 528, 675
BssMI GATC 6 cut(s) 16, 137, 439, 536, 682, 733
BssNI GRCGYC 4 cut(s) 27, 132, 147, 321
Bst2UI CCWGG 2 cut(s) 391, 552
Bst6I CTCTTC 4 cut(s) 53, 236, 316, 356
BstACI GRCGYC 4 cut(s) 27, 132, 147, 321
BstC8I GCNNGC 5 cut(s) 13, 181, 260, 376, 672
BstDSI CCRYGG 3 cut(s) 241, 286, 675
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 2 cut(s) 72, 583
BstFNI CGCG 4 cut(s) 413, 422, 474, 677
BstKTI GATC 6 cut(s) 19, 140, 442, 539, 685, 736
BstMAI GTCTC 3 cut(s) 178, 301, 337
BstMBI GATC 6 cut(s) 16, 137, 439, 536, 682, 733
BstMCI CGRYCG 3 cut(s) 339, 543, 675
BstMWI GCNNNNNNNGC 3 cut(s) 255, 419, 492
BstNI CCWGG 2 cut(s) 391, 552
BstNSI RCATGY 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 6 cut(s) 359, 389, 431, 527, 528, 550
BstUI CGCG 4 cut(s) 413, 422, 474, 677
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BstZI CGGCCG 1 cut(s) 672
BsuRI GGCC 4 cut(s) 5, 364, 395, 674
BtgI CCRYGG 3 cut(s) 241, 286, 675
BtgZI GCGATG 1 cut(s) 310
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 72, 583
Cac8I GCNNGC 5 cut(s) 13, 181, 260, 376, 672
Cfr10I RCCGGY 3 cut(s) 11, 128, 670
Cfr13I GGNCC 3 cut(s) 363, 393, 600
Cfr42I CCGCGG 1 cut(s) 678
Cfr9I CCCGGG 1 cut(s) 528
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 343, 457
CviAII CATG 2 cut(s) 259, 628
CviQI GTAC 2 cut(s) 343, 457
DpnI GATC 6 cut(s) 18, 139, 441, 538, 684, 735
DpnII GATC 6 cut(s) 16, 137, 439, 536, 682, 733
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 2 cut(s) 3, 672
EagI CGGCCG 1 cut(s) 672
Eam1104I CTCTTC 4 cut(s) 53, 236, 316, 356
EarI CTCTTC 4 cut(s) 53, 236, 316, 356
EciI GGCGGA 6 cut(s) 32, 166, 190, 256, 304, 740
EclXI CGGCCG 1 cut(s) 672
Eco47I GGWCC 1 cut(s) 600
Eco52I CGGCCG 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 686
Eco88I CYCGRG 3 cut(s) 496, 528, 695
Eco91I GGTNACC 1 cut(s) 546
EcoO65I GGTNACC 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 389, 550
Esp3I CGTCTC 2 cut(s) 301, 337
FaeI CATG 2 cut(s) 262, 631
FaiI YATR 4 cut(s) 260, 368, 509, 629
FaqI GGGAC 3 cut(s) 176, 511, 613
FatI CATG 2 cut(s) 258, 627
FauI CCCGC 4 cut(s) 188, 379, 479, 590
Fnu4HI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
FokI GGATG 2 cut(s) 59, 570
Fsp4HI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
GluI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
GsaI CCCAGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 4 cut(s) 5, 364, 395, 674
HapII CCGG 6 cut(s) 12, 129, 361, 432, 529, 671
HgaI GACGC 1 cut(s) 121
Hin1I GRCGYC 4 cut(s) 27, 132, 147, 321
Hin1II CATG 2 cut(s) 262, 631
HinfI GANTC 3 cut(s) 348, 386, 574
HpaII CCGG 6 cut(s) 12, 129, 361, 432, 529, 671
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 58, 241
Hpy188I TCNGA 4 cut(s) 25, 137, 439, 536
Hpy188III TCNNGA 2 cut(s) 355, 498
Hpy8I GTNNAC 2 cut(s) 58, 241
Hpy99I CGWCG 4 cut(s) 29, 32, 119, 323
HpyAV CCTTC 4 cut(s) 103, 280, 638, 724
HpyCH4IV ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
HpyCH4V TGCA 3 cut(s) 258, 262, 652
HpyF10VI GCNNNNNNNGC 3 cut(s) 255, 419, 492
HpySE526I ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
Hsp92I GRCGYC 4 cut(s) 27, 132, 147, 321
Hsp92II CATG 2 cut(s) 262, 631
KroI GCCGGC 2 cut(s) 11, 670
KroNI GCCGGC 2 cut(s) 13, 672
KspI CCGCGG 1 cut(s) 678
Kzo9I GATC 6 cut(s) 16, 137, 439, 536, 682, 733
LguI GCTCTTC 1 cut(s) 316
LweI GCATC 2 cut(s) 192, 592
MaeII ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
MaeIII GTNAC 2 cut(s) 148, 546
MalI GATC 6 cut(s) 18, 139, 441, 538, 684, 735
MbiI CCGCTC 1 cut(s) 398
MboI GATC 6 cut(s) 16, 137, 439, 536, 682, 733
MboII GAAGA 7 cut(s) 31, 40, 178, 223, 274, 303, 343
MflI RGATCY 1 cut(s) 682
MlyI GAGTC 2 cut(s) 342, 380
MmeI TCCRAC 3 cut(s) 48, 417, 514
MnlI CCTC 9 cut(s) 56, 100, 236, 239, 286, 376, 494, 654, 673
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 2 cut(s) 11, 670
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 6 cut(s) 12, 129, 361, 432, 529, 671
MspR9I CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
MvaI CCWGG 2 cut(s) 391, 552
MvnI CGCG 4 cut(s) 413, 422, 474, 677
MwoI GCNNNNNNNGC 3 cut(s) 255, 419, 492
NaeI GCCGGC 2 cut(s) 13, 672
NciI CCSGG 4 cut(s) 361, 433, 529, 530
NdeII GATC 6 cut(s) 16, 137, 439, 536, 682, 733
NgoMIV GCCGGC 2 cut(s) 11, 670
NlaIII CATG 2 cut(s) 262, 631
NlaIV GGNNCC 4 cut(s) 70, 430, 470, 601
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 521
PaeI GCATGC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 4 cut(s) 33, 327, 459, 600
PdiI GCCGGC 2 cut(s) 13, 672
PfeI GAWTC 1 cut(s) 574
PkrI GCNGC 9 cut(s) 7, 10, 112, 248, 251, 397, 415, 676, 693
PleI GAGTC 2 cut(s) 342, 380
PpsI GAGTC 2 cut(s) 342, 380
Psp6I CCWGG 2 cut(s) 389, 550
PspEI GGTNACC 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 2 cut(s) 389, 550
PspN4I GGNNCC 4 cut(s) 70, 430, 470, 601
PspPI GGNCC 3 cut(s) 363, 393, 600
PsuI RGATCY 1 cut(s) 682
RsaI GTAC 2 cut(s) 344, 458
RsaNI GTAC 2 cut(s) 343, 457
RseI CAYNNNNRTG 1 cut(s) 521
SacII CCGCGG 1 cut(s) 678
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 9 cut(s) 6, 9, 111, 247, 250, 396, 414, 675, 692
Sau3AI GATC 6 cut(s) 16, 137, 439, 536, 682, 733
Sau96I GGNCC 3 cut(s) 363, 393, 600
SchI GAGTC 2 cut(s) 342, 380
ScrFI CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
SfaNI GCATC 2 cut(s) 192, 592
Sfr303I CCGCGG 1 cut(s) 678
SgrAI CRCCGGYG 2 cut(s) 11, 128
SgrBI CCGCGG 1 cut(s) 678
SinI GGWCC 1 cut(s) 600
SmaI CCCGGG 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 521
SphI GCATGC 1 cut(s) 262
StyD4I CCNGG 6 cut(s) 359, 389, 431, 527, 528, 550
TaiI ACGT 6 cut(s) 30, 39, 150, 240, 297, 324
TaqI TCGA 3 cut(s) 30, 96, 339
TaqII GACCGA 3 cut(s) 325, 529, 617
TauI GCSGC 9 cut(s) 8, 11, 113, 249, 252, 398, 416, 677, 694
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 469, 644, 657
TspGWI ACGGA 3 cut(s) 41, 360, 441
TspMI CCCGGG 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 600
XceI RCATGY 1 cut(s) 262
XmaI CCCGGG 1 cut(s) 528
ZraI GACGTC 3 cut(s) 28, 148, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.