Rroxscaffold_178G00437420

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000178
OG0003936
Physical Location & Seq
Reverse (-)
177850 .. 180008
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_178G00437420.1

Sequence Viewer

Length: 483 bp
ATGTGGCTGTATATAAACAAGGAGAATGAAGGGTTGCAGGATAGGAGGTTGAAGCCGGCCGCGGAGGATCTGAGGCGGCTCGGGTGTGAGAAGGTGTTGGTGTTTGTGGCGGAGAAGGACCATTTGAACGGAGTGGGGAAAAGCTATGTGGAGGAGCTGAAGAAGAGTGGGTGGAAAGGGAGTGTGGAGATGAAGGAGAATAAGGGGAAGGACCATTGCTTTCATTTGTATGACACAAAGGATGAGCAGGCTGTGGATTTGGTGAAGACAGAGGCTGAACCGCCTCCCGCAGGATTTTACAAGGCTCGGTGTGAGAGGGTATTGATATTTTTGGCTGAAAAAGATGATTTGAGACATATAGGTCAATGTTATGTTGGGGATCTTAAAAAGAGTGAATGGAGTGAGAGTGTTGAAGTAGTGGGGAATTATTCTATGGTCCCGGACTACCACGTGGCACCGCCATGTGGTGGTCCAAGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

160

Amino Acids

18.19

Weight (kDa)

5.77

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 4 - 75 2.2e-07 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 454
AccB7I CCANNNNNTGG 1 cut(s) 467
AccII CGCG 1 cut(s) 62
AciI CCGC 7 cut(s) 60, 62, 76, 110, 281, 288, 458
AclWI GGATC 2 cut(s) 75, 387
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 179
AcvI CACGTG 1 cut(s) 451
AfiI CCNNNNNNNGG 3 cut(s) 290, 464, 467
AgsI TTSAA 3 cut(s) 52, 127, 413
AluBI AGCT 2 cut(s) 144, 157
AluI AGCT 2 cut(s) 144, 157
Alw26I GTCTC 1 cut(s) 346
AlwI GGATC 2 cut(s) 75, 387
AlwNI CAGNNNCTG 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 1 cut(s) 57
AspS9I GGNCC 4 cut(s) 118, 211, 436, 470
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 4 cut(s) 118, 211, 436, 470
BanI GGYRCC 1 cut(s) 454
BbrPI CACGTG 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 272
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 346
BisI GCNGC 2 cut(s) 60, 77
BlsI GCNGC 2 cut(s) 61, 78
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 4 cut(s) 118, 211, 436, 470
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 4 cut(s) 118, 211, 436, 470
BmiI GGNNCC 2 cut(s) 438, 456
BmrFI CCNGG 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 451
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 464, 467
Bse118I RCCGGY 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 3 cut(s) 290, 464, 467
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 167
BseX3I CGGCCG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 454
BsiEI CGRYCG 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 56, 440
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 3 cut(s) 290, 464, 467
BsmAI GTCTC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 80
Bsp143I GATC 2 cut(s) 67, 379
BspACI CCGC 7 cut(s) 60, 62, 76, 110, 281, 288, 458
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 438, 456
BspPI GGATC 2 cut(s) 75, 387
BspT107I GGYRCC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 67, 379
Bst6I CTCTTC 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 57, 249
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 2 cut(s) 70, 382
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 2 cut(s) 67, 379
BstMCI CGRYCG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 438
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 2 cut(s) 67, 379
BstYI RGATCY 2 cut(s) 67, 379
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 57, 249
CaiI CAGNNNCTG 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 4 cut(s) 118, 211, 436, 470
Cfr42I CCGCGG 1 cut(s) 63
CviAII CATG 1 cut(s) 462
DdeI CTNAG 1 cut(s) 71
DpnI GATC 2 cut(s) 69, 381
DpnII GATC 2 cut(s) 67, 379
DrdI GACNNNNNNGTC 1 cut(s) 360
DseDI GACNNNNNNGTC 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 57
Eco47I GGWCC 4 cut(s) 118, 211, 436, 470
Eco52I CGGCCG 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 179
Eco72I CACGTG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 288
FaeI CATG 1 cut(s) 465
FaiI YATR 9 cut(s) 12, 14, 147, 231, 357, 359, 372, 434, 463
FaqI GGGAC 1 cut(s) 422
FatI CATG 1 cut(s) 461
FauI CCCGC 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 60, 77
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 60, 77
GluI GCNGC 2 cut(s) 60, 77
HaeIII GGCC 1 cut(s) 59
HapII CCGG 2 cut(s) 56, 440
Hin1II CATG 1 cut(s) 465
HpaII CCGG 2 cut(s) 56, 440
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 72
HpyAV CCTTC 5 cut(s) 23, 85, 109, 187, 202
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 1 cut(s) 465
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 2 cut(s) 67, 379
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 5 cut(s) 23, 69, 233, 276, 453
MaeII ACGT 1 cut(s) 450
MalI GATC 2 cut(s) 69, 381
MboI GATC 2 cut(s) 67, 379
MboII GAAGA 3 cut(s) 172, 175, 277
MflI RGATCY 2 cut(s) 67, 379
MluCI AATT 1 cut(s) 424
MnlI CCTC 7 cut(s) 39, 58, 66, 145, 265, 294, 309
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 2 cut(s) 228, 460
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 56, 440
MspR9I CCNGG 1 cut(s) 440
MvnI CGCG 1 cut(s) 62
NaeI GCCGGC 1 cut(s) 57
NciI CCSGG 1 cut(s) 440
NdeII GATC 2 cut(s) 67, 379
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 1 cut(s) 465
NlaIV GGNNCC 2 cut(s) 438, 456
PdiI GCCGGC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 467
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 2 cut(s) 61, 78
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 451
PspCI CACGTG 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 438, 456
PspPI GGNCC 4 cut(s) 118, 211, 436, 470
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 2 cut(s) 67, 379
RseI CAYNNNNRTG 2 cut(s) 228, 460
SacII CCGCGG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 2 cut(s) 60, 77
Sau3AI GATC 2 cut(s) 67, 379
Sau96I GGNCC 4 cut(s) 118, 211, 436, 470
ScrFI CCNGG 1 cut(s) 440
SetI ASST 6 cut(s) 50, 96, 146, 159, 364, 453
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SinI GGWCC 4 cut(s) 118, 211, 436, 470
SmiMI CAYNNNNRTG 2 cut(s) 228, 460
Sse9I AATT 1 cut(s) 424
SsiI CCGC 7 cut(s) 60, 62, 76, 110, 281, 288, 458
StyD4I CCNGG 1 cut(s) 438
TaiI ACGT 1 cut(s) 453
TasI AATT 1 cut(s) 424
TauI GCSGC 2 cut(s) 62, 79
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TspDTI ATGAA 3 cut(s) 42, 206, 212
TspGWI ACGGA 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 467
VpaK11BI GGWCC 4 cut(s) 118, 211, 436, 470
XagI CCTNNNNNAGG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.