Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

55350379 .. 55351291

Gene Structure 913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCCGCCGCCGCCGATCACTCCGACGTGGAACTCGAGTTTCGCTTCTTCCGCGTCCACAAAGACGGCACTATCCACCGAACCCATCCCCACATTGACAAAGTCCCACCCTCCGACGACCCGACCACCGAGATCCGATCCAAAGACGTCACCATCTCAACCGACCCACCCATCTCCGCCCGCATTTTCCTACCCAACTCCGTCGACCCTACCCGGAAGCTCCCCCTCCTCCTCTACCTCCACGGCGGCGGCTTCTGCTTCGAGTCGCCCTGCTCCTCCACCTACCACAACTACGTCTCCACCATCGCCGCTTCCGCCAACGTCATCGCCGTCTCAGTCGAGTACGGTCTCTTCCCGACCCGGCCCATTCCCGCTTGCTACGACGACTCCTGGGCCGCCCTCCAATGGGTCGGGACCCATGCGGACAAAACCGGGTCGGAGCCCGCTGGAGGGAACATAGCGCACACTTTGATGTCCCGGGTCGGGTCCATCGGGTTACCCGGAGCGAAAGTGGTCGGGGCAATATTAGTGCATCCCTACTTTGGTGGGACTGATGATGATAAGATGTGGCTGTACATGAATAAGGAGAATGAAGGGTTGCAGGATCGGAGGCTGGTACCGGCCGCAGAGGATTTACGGCGGCTTGGGTGTGAGAGGGTGTTGGTGTTTGTGGCGGAGATGGACCATTTGAAAGGTGGCGGGAAGAGGTATGCGGAGGAGCTGAAGAAGAGTGAGTGGAGTGGGAGTGTGGAGGTGAAGGATTCTGTAGGGAAAGACCATTGCTTTCACTTGGCTGAACCCAAGGATGAGCAGACTATGGATTTGGTCAAGAAAATTGCTTCTTTTATTAATCTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

286

Amino Acids

31.54

Weight (kDa)

5.95

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	63 - 144	6.9e-07	BD-FAE
Abhydrolase_3	PF07859	77 - 184	4.6e-21	alpha/beta hydrolase fold
Abhydrolase_3	PF07859	190 - 263	1.8e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
Acc65I	GGTACC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	616
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	54
AclWI	GGATC	3 cut(s)	127, 132, 612
AcoI	YGGCCR	2 cut(s)	3, 621
AcuI	CTGAAG	1 cut(s)	743
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	3 cut(s)	344, 575, 618
AfiI	CCNNNNNNNGG	6 cut(s)	405, 406, 449, 450, 483, 542
AgsI	TTSAA	1 cut(s)	691
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	220, 721
AluI	AGCT	2 cut(s)	220, 721
Alw26I	GTCTC	3 cut(s)	301, 337, 353
AlwI	GGATC	3 cut(s)	127, 132, 612
Ama87I	CYCGRG	2 cut(s)	35, 477
AoxI	GGCC	4 cut(s)	3, 362, 393, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	805, 837
AseI	ATTAAT	1 cut(s)	849
Asp718I	GGTACC	1 cut(s)	616
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	5 cut(s)	363, 393, 414, 486, 682
AsuC2I	CCSGG	6 cut(s)	214, 361, 433, 478, 479, 501
AsuHPI	GGTGA	2 cut(s)	142, 766
AvaI	CYCGRG	2 cut(s)	35, 477
AvaII	GGWCC	3 cut(s)	414, 486, 682
BanI	GGYRCC	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	444
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BccI	CCATC	6 cut(s)	93, 161, 179, 311, 497, 673
BceAI	ACGGC	4 cut(s)	82, 259, 314, 653
BciT130I	CCWGG	1 cut(s)	391
BcnI	CCSGG	6 cut(s)	214, 361, 433, 478, 479, 501
BcoDI	GTCTC	3 cut(s)	301, 337, 353
BfaI	CTAG	1 cut(s)	859
BfmI	CTRYAG	1 cut(s)	765
BisI	GCNGC	9 cut(s)	6, 9, 12, 247, 250, 309, 396, 624, 641
BlsI	GCNGC	9 cut(s)	7, 10, 13, 248, 251, 310, 397, 625, 642
Bme1390I	CCNGG	7 cut(s)	214, 361, 391, 433, 478, 479, 501
Bme18I	GGWCC	3 cut(s)	414, 486, 682
BmeT110I	CYCGRG	2 cut(s)	35, 477
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	5 cut(s)	363, 393, 414, 486, 682
BmiI	GGNNCC	5 cut(s)	415, 416, 441, 487, 618
BmrFI	CCNGG	7 cut(s)	214, 361, 391, 433, 478, 479, 501
BmsI	GCATC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	468
BpuMI	CCSGG	6 cut(s)	214, 361, 433, 478, 479, 501
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	4 cut(s)	241, 390, 477, 801
BsaXI	ACNNNNNCTCC	8 cut(s)	281, 311, 371, 401, 495, 525, 730, 760
Bsc4I	CCNNNNNNNGG	6 cut(s)	405, 406, 449, 450, 483, 542
Bse118I	RCCGGY	1 cut(s)	619
Bse3DI	GCAATG	1 cut(s)	778
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	4 cut(s)	241, 390, 477, 801
BseGI	GGATG	3 cut(s)	85, 532, 811
BseLI	CCNNNNNNNGG	6 cut(s)	405, 406, 449, 450, 483, 542
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	4 cut(s)	218, 221, 265, 731
BseX3I	CGGCCG	1 cut(s)	621
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	624
BshFI	GGCC	4 cut(s)	5, 364, 395, 623
BshNI	GGYRCC	1 cut(s)	616
BsiEI	CGRYCG	1 cut(s)	624
BsiHKCI	CYCGRG	2 cut(s)	35, 477
BsiSI	CCGG	6 cut(s)	214, 361, 432, 478, 501, 620
BslFI	GGGAC	4 cut(s)	89, 427, 460, 562
BslI	CCNNNNNNNGG	6 cut(s)	405, 406, 449, 450, 483, 542
BsmAI	GTCTC	3 cut(s)	301, 337, 353
BsmBI	CGTCTC	2 cut(s)	301, 337
BsmFI	GGGAC	4 cut(s)	89, 427, 460, 562
BsnI	GGCC	4 cut(s)	5, 364, 395, 623
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	2 cut(s)	35, 477
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	4 cut(s)	16, 132, 137, 604
BspANI	GGCC	4 cut(s)	5, 364, 395, 623
BspCNI	CTCAG	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	5 cut(s)	415, 416, 441, 487, 618
BspPI	GGATC	3 cut(s)	127, 132, 612
BspT107I	GGYRCC	1 cut(s)	616
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	778
BsrFI	RCCGGY	1 cut(s)	619
BsrGI	TGTACA	1 cut(s)	573
BssAI	RCCGGY	1 cut(s)	619
BssECI	CCNNGG	4 cut(s)	241, 390, 477, 801
BssMI	GATC	4 cut(s)	16, 132, 137, 604
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	801
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	3 cut(s)	356, 698, 722
BstACI	GRCGYC	1 cut(s)	147
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	3 cut(s)	181, 376, 444
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	1 cut(s)	241
BstEII	GGTNACC	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	85, 532, 811
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	4 cut(s)	19, 135, 140, 607
BstMAI	GTCTC	3 cut(s)	301, 337, 353
BstMBI	GATC	4 cut(s)	16, 132, 137, 604
BstMCI	CGRYCG	1 cut(s)	624
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 51, 255, 314
BstNI	CCWGG	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	495
BstSCI	CCNGG	7 cut(s)	212, 359, 389, 431, 476, 477, 499
BstSFI	CTRYAG	1 cut(s)	765
BstUI	CGCG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BstZI	CGGCCG	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	5, 364, 395, 623
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	2 cut(s)	289, 310
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	85, 532, 811
Cac8I	GCNNGC	3 cut(s)	181, 376, 444
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	619
Cfr13I	GGNCC	5 cut(s)	363, 393, 414, 486, 682
Cfr9I	CCCGGG	1 cut(s)	477
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	3 cut(s)	343, 574, 617
CviAII	CATG	2 cut(s)	419, 577
CviQI	GTAC	3 cut(s)	343, 574, 617
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	4 cut(s)	18, 134, 139, 606
DpnII	GATC	4 cut(s)	16, 132, 137, 604
EaeI	YGGCCR	2 cut(s)	3, 621
EagI	CGGCCG	1 cut(s)	621
Eam1104I	CTCTTC	3 cut(s)	356, 698, 722
EarI	CTCTTC	3 cut(s)	356, 698, 722
EciI	GGCGGA	3 cut(s)	166, 304, 689
EclXI	CGGCCG	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	3 cut(s)	414, 486, 682
Eco52I	CGGCCG	1 cut(s)	621
Eco57I	CTGAAG	1 cut(s)	743
Eco88I	CYCGRG	2 cut(s)	35, 477
Eco91I	GGTNACC	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	414
EcoO65I	GGTNACC	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	801
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	801
Esp3I	CGTCTC	2 cut(s)	301, 337
FaeI	CATG	2 cut(s)	422, 580
FaiI	YATR	5 cut(s)	420, 458, 578, 711, 818
FaqI	GGGAC	4 cut(s)	89, 427, 460, 562
FatI	CATG	2 cut(s)	418, 576
FauI	CCCGC	4 cut(s)	188, 379, 451, 692
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	9 cut(s)	6, 9, 12, 247, 250, 309, 396, 624, 641
FokI	GGATG	3 cut(s)	72, 519, 818
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	9 cut(s)	6, 9, 12, 247, 250, 309, 396, 624, 641
FspBI	CTAG	1 cut(s)	859
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	9 cut(s)	6, 9, 12, 247, 250, 309, 396, 624, 641
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	4 cut(s)	5, 364, 395, 623
HapII	CCGG	6 cut(s)	214, 361, 432, 478, 501, 620
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	463
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	422, 580
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	263, 386, 761
HpaII	CCGG	6 cut(s)	214, 361, 432, 478, 501, 620
HphI	GGTGA	2 cut(s)	142, 766
Hpy166II	GTNNAC	2 cut(s)	58, 205
Hpy188I	TCNGA	5 cut(s)	25, 115, 137, 439, 609
Hpy188III	TCNNGA	3 cut(s)	355, 412, 829
Hpy8I	GTNNAC	2 cut(s)	58, 205
Hpy99I	CGWCG	4 cut(s)	29, 119, 206, 386
HpyAV	CCTTC	2 cut(s)	587, 751
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	4 cut(s)	27, 147, 294, 321
HpyCH4V	TGCA	2 cut(s)	532, 601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 51, 255, 314
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	4 cut(s)	27, 147, 294, 321
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	422, 580
HspAI	GCGC	1 cut(s)	461
KflI	GGGWCCC	1 cut(s)	414
KpnI	GGTACC	1 cut(s)	620
Kzo9I	GATC	4 cut(s)	16, 132, 137, 604
LmnI	GCTCC	5 cut(s)	225, 278, 439, 503, 718
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	859
MaeII	ACGT	4 cut(s)	27, 147, 294, 321
MaeIII	GTNAC	2 cut(s)	148, 495
MalI	GATC	4 cut(s)	18, 134, 139, 606
MboI	GATC	4 cut(s)	16, 132, 137, 604
MboII	GAAGA	5 cut(s)	40, 343, 715, 736, 739
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	1 cut(s)	834
MlyI	GAGTC	2 cut(s)	272, 380
MmeI	TCCRAC	3 cut(s)	48, 138, 417
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	6 cut(s)	214, 361, 432, 478, 501, 620
MspR9I	CCNGG	7 cut(s)	214, 361, 391, 433, 478, 479, 501
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	11, 51, 255, 314
NciI	CCSGG	6 cut(s)	214, 361, 433, 478, 479, 501
NdeII	GATC	4 cut(s)	16, 132, 137, 604
NlaIII	CATG	2 cut(s)	422, 580
NlaIV	GGNNCC	5 cut(s)	415, 416, 441, 487, 618
NmuCI	GTSAC	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 327
PfeI	GAWTC	1 cut(s)	761
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	9 cut(s)	7, 10, 13, 248, 251, 310, 397, 625, 642
PleI	GAGTC	2 cut(s)	271, 380
PpsI	GAGTC	2 cut(s)	271, 380
PpuMI	RGGWCCY	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	849
Psp5II	RGGWCCY	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	5 cut(s)	415, 416, 441, 487, 618
PspPI	GGNCC	5 cut(s)	363, 393, 414, 486, 682
PspPPI	RGGWCCY	1 cut(s)	414
PspXI	VCTCGAGB	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	3 cut(s)	344, 575, 618
RsaNI	GTAC	3 cut(s)	343, 574, 617
RseI	CAYNNNNRTG	1 cut(s)	470
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	9 cut(s)	6, 9, 12, 247, 250, 309, 396, 624, 641
Sau3AI	GATC	4 cut(s)	16, 132, 137, 604
Sau96I	GGNCC	5 cut(s)	363, 393, 414, 486, 682
SchI	GAGTC	2 cut(s)	272, 380
ScrFI	CCNGG	7 cut(s)	214, 361, 391, 433, 478, 479, 501
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	1 cut(s)	765
Sfr274I	CTCGAG	1 cut(s)	35
SinI	GGWCC	3 cut(s)	414, 486, 682
SlaI	CTCGAG	1 cut(s)	35
SmaI	CCCGGG	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	834
SspI	AATATT	1 cut(s)	525
SspMI	CTAG	1 cut(s)	859
StyD4I	CCNGG	7 cut(s)	212, 359, 389, 431, 476, 477, 499
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	4 cut(s)	30, 150, 297, 324
TaqI	TCGA	4 cut(s)	36, 204, 261, 339
TasI	AATT	1 cut(s)	834
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	9 cut(s)	8, 11, 14, 249, 252, 311, 398, 626, 643
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	593, 606
TspGWI	ACGGA	1 cut(s)	190
TspMI	CCCGGG	1 cut(s)	477
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	3 cut(s)	414, 486, 682
VspI	ATTAAT	1 cut(s)	849
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692
XhoI	CTCGAG	1 cut(s)	35
XmaI	CCCGGG	1 cut(s)	477
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	859
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.