Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

9458039 .. 9459093

Gene Structure 1055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG086600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCCGCCGCCGCCGATCACTCCGACGTCGAACTCGAGTTTCGCTTCTTCCGCGTCCACAAAGACGGCACCATCCACCGAACCCATCCCCACATTGACAAAGTCCCACCCTCTGACGACCCGACCACCGAGATCCGATCCAAAGACGTCACCATCTCAACCGACCCACCCATCTCCGCCCGCATTTTCCTACCCAACTCCGTCGACCCTACCCGGAAGCTCCCCCTCCTCCTCTACCTCCACGGCGGCGGCTTCTGCTTCGAGTCGCCCTGCTCCTCCACCTACCACAACTACGTCTCCACCGTCGCCGCTTCCGCCAACGTCATCGCCGTCTCAGTCGAGTACGGTCTCTTCCCGACCCGGCCCATTCCCGCTTGCTACGACGACTCCTGGGCCGCCCTCCAATGGGTCGGGACGCATGCGGACAAAAACGGGTCGGAGCCGTGGCTAAAAGACTTCGCCGACTTGACCCGCGTCTTCGTCGGCGGGGATAGCGCTGGAGGGAACATAGCGCACACTTTGATGTCCCGGGTCGGGTCGATCAGGTTACCCGGAGCGAAAGTGGTGGGGGCAATACTGGTGCATCCCTACTTTGGTGGGACTGATGATGATAAGATGTGGCTGTACATGAATAAGGAGAATGAAGGGTTGCAGGATAGGAGGCTGGTACCGGCCGCGGAGGATCTACGGCGACTTGGGTGTGAGAGGGTGTTGGTGTTTGTGGCGGAGAAGGACCATTTGAAAGGTGGCGGGAAGAGGTATGTGGAGGAGCTGAAGAGGAGTGGGTGGAGTGGGAGTGTGGAGGTGAAGGAGACTGTAGGGAAAGACCATTGCTTTCACTTGGCTGAACCCAAGGATGAGCAGACTATGGATTTGGTCAAGAAAATTGCTTCTTTTATTAATCTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

303

Amino Acids

33.55

Weight (kDa)

6.15

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	62 - 176	7e-07	Carboxylesterase family
BD-FAE	PF20434	63 - 172	4.2e-09	BD-FAE
Abhydrolase_3	PF07859	77 - 280	1.1e-37	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	30, 150
Acc65I	GGTACC	1 cut(s)	667
AccB1I	GGYRCC	2 cut(s)	68, 667
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	3 cut(s)	54, 474, 677
AclWI	GGATC	3 cut(s)	127, 132, 690
AcoI	YGGCCR	2 cut(s)	3, 672
AcuI	CTGAAG	1 cut(s)	794
AcyI	GRCGYC	2 cut(s)	27, 147
AfaI	GTAC	3 cut(s)	344, 626, 669
AfeI	AGCGCT	1 cut(s)	496
AfiI	CCNNNNNNNGG	4 cut(s)	405, 406, 534, 593
AgsI	TTSAA	1 cut(s)	742
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	220, 772
AluI	AGCT	2 cut(s)	220, 772
Alw26I	GTCTC	4 cut(s)	301, 337, 353, 806
AlwI	GGATC	3 cut(s)	127, 132, 690
Ama87I	CYCGRG	2 cut(s)	35, 528
Aor51HI	AGCGCT	1 cut(s)	496
AoxI	GGCC	4 cut(s)	3, 362, 393, 672
ArsI	GACNNNNNNTTYG	2 cut(s)	856, 888
AseI	ATTAAT	1 cut(s)	900
Asp718I	GGTACC	1 cut(s)	667
AspLEI	GCGC	2 cut(s)	497, 514
AspS9I	GGNCC	3 cut(s)	363, 393, 733
AsuC2I	CCSGG	5 cut(s)	214, 361, 529, 530, 552
AsuHPI	GGTGA	2 cut(s)	142, 817
AvaI	CYCGRG	2 cut(s)	35, 528
AvaII	GGWCC	1 cut(s)	733
BanI	GGYRCC	2 cut(s)	68, 667
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BbsI	GAAGAC	1 cut(s)	469
BccI	CCATC	4 cut(s)	80, 93, 161, 179
BceAI	ACGGC	5 cut(s)	82, 259, 314, 427, 704
BciT130I	CCWGG	1 cut(s)	391
BcnI	CCSGG	5 cut(s)	214, 361, 529, 530, 552
BcoDI	GTCTC	4 cut(s)	301, 337, 353, 806
BfaI	CTAG	1 cut(s)	910
BfmI	CTRYAG	1 cut(s)	816
BfoI	RGCGCY	1 cut(s)	498
BisI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
BlsI	GCNGC	8 cut(s)	7, 10, 13, 248, 251, 310, 397, 676
Bme1390I	CCNGG	6 cut(s)	214, 361, 391, 529, 530, 552
Bme18I	GGWCC	1 cut(s)	733
BmeT110I	CYCGRG	2 cut(s)	35, 528
BmgT120I	GGNCC	3 cut(s)	363, 393, 733
BmiI	GGNNCC	3 cut(s)	70, 441, 669
BmrFI	CCNGG	6 cut(s)	214, 361, 391, 529, 530, 552
BmsI	GCATC	1 cut(s)	592
BoxI	GACNNNNGTC	1 cut(s)	473
BpiI	GAAGAC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	519
BpuMI	CCSGG	5 cut(s)	214, 361, 529, 530, 552
BsaHI	GRCGYC	2 cut(s)	27, 147
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	6 cut(s)	241, 390, 443, 528, 675, 852
BsaXI	ACNNNNNCTCC	8 cut(s)	281, 311, 371, 401, 546, 576, 781, 811
Bsc4I	CCNNNNNNNGG	4 cut(s)	405, 406, 534, 593
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	6 cut(s)	241, 390, 443, 528, 675, 852
BseGI	GGATG	4 cut(s)	72, 85, 583, 862
BseLI	CCNNNNNNNGG	4 cut(s)	405, 406, 534, 593
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	582
BseRI	GAGGAG	5 cut(s)	218, 221, 265, 782, 793
BseX3I	CGGCCG	1 cut(s)	672
Bsh1236I	CGCG	3 cut(s)	54, 474, 677
Bsh1285I	CGRYCG	1 cut(s)	675
BshFI	GGCC	4 cut(s)	5, 364, 395, 674
BshNI	GGYRCC	2 cut(s)	68, 667
BsiEI	CGRYCG	1 cut(s)	675
BsiHKCI	CYCGRG	2 cut(s)	35, 528
BsiSI	CCGG	5 cut(s)	214, 361, 529, 552, 671
BslFI	GGGAC	4 cut(s)	89, 427, 511, 613
BslI	CCNNNNNNNGG	4 cut(s)	405, 406, 534, 593
BsmAI	GTCTC	4 cut(s)	301, 337, 353, 806
BsmBI	CGTCTC	2 cut(s)	301, 337
BsmFI	GGGAC	4 cut(s)	89, 427, 511, 613
BsnI	GGCC	4 cut(s)	5, 364, 395, 674
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	2 cut(s)	35, 528
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	5 cut(s)	16, 132, 137, 540, 682
BspANI	GGCC	4 cut(s)	5, 364, 395, 674
BspCNI	CTCAG	1 cut(s)	347
BspFNI	CGCG	3 cut(s)	54, 474, 677
BspLI	GGNNCC	3 cut(s)	70, 441, 669
BspPI	GGATC	3 cut(s)	127, 132, 690
BspT107I	GGYRCC	2 cut(s)	68, 667
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	829
BsrFI	RCCGGY	1 cut(s)	670
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	6 cut(s)	241, 390, 443, 528, 675, 852
BssMI	GATC	5 cut(s)	16, 132, 137, 540, 682
BssNI	GRCGYC	2 cut(s)	27, 147
BssT1I	CCWWGG	1 cut(s)	852
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	3 cut(s)	304, 347, 817
Bst6I	CTCTTC	3 cut(s)	356, 749, 770
BstACI	GRCGYC	2 cut(s)	27, 147
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	3 cut(s)	181, 376, 420
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	3 cut(s)	241, 443, 675
BstEII	GGTNACC	1 cut(s)	546
BstF5I	GGATG	4 cut(s)	72, 85, 583, 862
BstFNI	CGCG	3 cut(s)	54, 474, 677
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	2 cut(s)	497, 514
BstKTI	GATC	5 cut(s)	19, 135, 140, 543, 685
BstMAI	GTCTC	4 cut(s)	301, 337, 353, 806
BstMBI	GATC	5 cut(s)	16, 132, 137, 540, 682
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 51, 255, 314, 492
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	1 cut(s)	422
BstPAI	GACNNNNGTC	1 cut(s)	473
BstPI	GGTNACC	1 cut(s)	546
BstSCI	CCNGG	6 cut(s)	212, 359, 389, 527, 528, 550
BstSFI	CTRYAG	1 cut(s)	816
BstUI	CGCG	3 cut(s)	54, 474, 677
BstV2I	GAAGAC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	132, 682
BstYI	RGATCY	2 cut(s)	132, 682
BstZI	CGGCCG	1 cut(s)	672
BsuRI	GGCC	4 cut(s)	5, 364, 395, 674
BtgI	CCRYGG	3 cut(s)	241, 443, 675
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	4 cut(s)	72, 85, 583, 862
Cac8I	GCNNGC	3 cut(s)	181, 376, 420
CfoI	GCGC	2 cut(s)	497, 514
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	3 cut(s)	363, 393, 733
Cfr42I	CCGCGG	1 cut(s)	678
Cfr9I	CCCGGG	1 cut(s)	528
CseI	GACGC	3 cut(s)	43, 424, 463
Csp6I	GTAC	3 cut(s)	343, 625, 668
CviAII	CATG	2 cut(s)	419, 628
CviQI	GTAC	3 cut(s)	343, 625, 668
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	5 cut(s)	18, 134, 139, 542, 684
DpnII	GATC	5 cut(s)	16, 132, 137, 540, 682
EaeI	YGGCCR	2 cut(s)	3, 672
EagI	CGGCCG	1 cut(s)	672
Eam1104I	CTCTTC	3 cut(s)	356, 749, 770
EarI	CTCTTC	3 cut(s)	356, 749, 770
EciI	GGCGGA	3 cut(s)	166, 304, 740
EclXI	CGGCCG	1 cut(s)	672
Eco130I	CCWWGG	1 cut(s)	852
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	733
Eco47III	AGCGCT	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	794
Eco88I	CYCGRG	2 cut(s)	35, 528
Eco91I	GGTNACC	1 cut(s)	546
EcoO65I	GGTNACC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	852
ErhI	CCWWGG	1 cut(s)	852
Esp3I	CGTCTC	2 cut(s)	301, 337
FaeI	CATG	2 cut(s)	422, 631
FaiI	YATR	5 cut(s)	420, 509, 629, 762, 869
FaqI	GGGAC	4 cut(s)	89, 427, 511, 613
FatI	CATG	2 cut(s)	418, 627
FauI	CCCGC	5 cut(s)	188, 379, 479, 479, 743
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
FokI	GGATG	4 cut(s)	59, 72, 570, 869
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
FspBI	CTAG	1 cut(s)	910
GlaI	GCGC	2 cut(s)	496, 513
GluI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	4 cut(s)	5, 364, 395, 674
HapII	CCGG	5 cut(s)	214, 361, 529, 552, 671
HgaI	GACGC	3 cut(s)	43, 424, 463
HhaI	GCGC	2 cut(s)	497, 514
Hin1I	GRCGYC	2 cut(s)	27, 147
Hin1II	CATG	2 cut(s)	422, 631
Hin6I	GCGC	2 cut(s)	495, 512
HinP1I	GCGC	2 cut(s)	495, 512
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	263, 386
HpaII	CCGG	5 cut(s)	214, 361, 529, 552, 671
HphI	GGTGA	2 cut(s)	142, 817
Hpy166II	GTNNAC	2 cut(s)	58, 205
Hpy188I	TCNGA	4 cut(s)	25, 115, 137, 439
Hpy188III	TCNNGA	3 cut(s)	355, 412, 880
Hpy8I	GTNNAC	2 cut(s)	58, 205
Hpy99I	CGWCG	6 cut(s)	29, 32, 206, 308, 386, 485
HpyAV	CCTTC	3 cut(s)	638, 724, 802
HpyCH4III	ACNGT	3 cut(s)	304, 347, 817
HpyCH4IV	ACGT	4 cut(s)	27, 147, 294, 321
HpyCH4V	TGCA	2 cut(s)	583, 652
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 51, 255, 314, 492
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	4 cut(s)	27, 147, 294, 321
Hsp92I	GRCGYC	2 cut(s)	27, 147
Hsp92II	CATG	2 cut(s)	422, 631
HspAI	GCGC	2 cut(s)	495, 512
KpnI	GGTACC	1 cut(s)	671
KspI	CCGCGG	1 cut(s)	678
Kzo9I	GATC	5 cut(s)	16, 132, 137, 540, 682
LmnI	GCTCC	5 cut(s)	225, 278, 439, 554, 769
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	1 cut(s)	910
MaeII	ACGT	4 cut(s)	27, 147, 294, 321
MaeIII	GTNAC	2 cut(s)	148, 546
MalI	GATC	5 cut(s)	18, 134, 139, 542, 684
MboI	GATC	5 cut(s)	16, 132, 137, 540, 682
MboII	GAAGA	5 cut(s)	40, 343, 469, 766, 787
MflI	RGATCY	2 cut(s)	132, 682
MluCI	AATT	1 cut(s)	885
MlyI	GAGTC	2 cut(s)	272, 380
MmeI	TCCRAC	2 cut(s)	48, 417
MseI	TTAA	1 cut(s)	900
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	5 cut(s)	214, 361, 529, 552, 671
MspR9I	CCNGG	6 cut(s)	214, 361, 391, 529, 530, 552
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	3 cut(s)	54, 474, 677
MwoI	GCNNNNNNNGC	5 cut(s)	11, 51, 255, 314, 492
NciI	CCSGG	5 cut(s)	214, 361, 529, 530, 552
NdeII	GATC	5 cut(s)	16, 132, 137, 540, 682
NlaIII	CATG	2 cut(s)	422, 631
NlaIV	GGNNCC	3 cut(s)	70, 441, 669
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	422
PaeI	GCATGC	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	3 cut(s)	33, 300, 327
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	8 cut(s)	7, 10, 13, 248, 251, 310, 397, 676
PleI	GAGTC	2 cut(s)	271, 380
PpsI	GAGTC	2 cut(s)	271, 380
PshAI	GACNNNNGTC	1 cut(s)	473
PshBI	ATTAAT	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	70, 441, 669
PspPI	GGNCC	3 cut(s)	363, 393, 733
PspXI	VCTCGAGB	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	132, 682
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	3 cut(s)	344, 626, 669
RsaNI	GTAC	3 cut(s)	343, 625, 668
RseI	CAYNNNNRTG	1 cut(s)	521
SacII	CCGCGG	1 cut(s)	678
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	900
SatI	GCNGC	8 cut(s)	6, 9, 12, 247, 250, 309, 396, 675
Sau3AI	GATC	5 cut(s)	16, 132, 137, 540, 682
Sau96I	GGNCC	3 cut(s)	363, 393, 733
SchI	GAGTC	2 cut(s)	272, 380
ScrFI	CCNGG	6 cut(s)	214, 361, 391, 529, 530, 552
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	816
Sfr274I	CTCGAG	1 cut(s)	35
Sfr303I	CCGCGG	1 cut(s)	678
SgrBI	CCGCGG	1 cut(s)	678
SinI	GGWCC	1 cut(s)	733
SlaI	CTCGAG	1 cut(s)	35
SmaI	CCCGGG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	1 cut(s)	885
SspMI	CTAG	1 cut(s)	910
StyD4I	CCNGG	6 cut(s)	212, 359, 389, 527, 528, 550
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	3 cut(s)	304, 347, 817
TaiI	ACGT	4 cut(s)	30, 150, 297, 324
TaqI	TCGA	6 cut(s)	30, 36, 204, 261, 339, 539
TasI	AATT	1 cut(s)	885
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	8 cut(s)	8, 11, 14, 249, 252, 311, 398, 677
Tru1I	TTAA	1 cut(s)	900
Tru9I	TTAA	1 cut(s)	900
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	644, 657
TspGWI	ACGGA	1 cut(s)	190
TspMI	CCCGGG	1 cut(s)	528
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	733
VspI	ATTAAT	1 cut(s)	900
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	743
XhoI	CTCGAG	1 cut(s)	35
XmaI	CCCGGG	1 cut(s)	528
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	910
ZraI	GACGTC	2 cut(s)	28, 148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.