Rmu_sc0008229.1_g000003

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008229.1
OG0003936
Physical Location & Seq
Reverse (-)
9614 .. 10592
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008229.1_g000003.1.cds

Sequence Viewer

Length: 909 bp
atggccgccgctggcgatcactccgacgttgaacacgtcttccgcttcttccgcgtccacaaagacggcaccatccaccgaacccatccctccttcgacaaaatcccagccggcgacgacctcatcaccggcgtccgatccaaagacgtcaccatctccaccgacccacccgtctccgcccgcatcttcgtccccaaatccgccgacccggcccgaaagctccccctcttcttctacgtccacggcggcggcttctgcatgcagtccgccttctcctccgcctaccacggctacgtctccaccatctgctcctccgccgacgtcatcgccgtctcggtcgagtacggactcttcccgacccggcccatacccgcttgctacgaggactcctgggccgctctccaatgggtcgcggctcacgcgaacggaaccgggtcggatcaatggctaaacgagtacgccgacttgaaccgcgtgttcatcggcggggacagcgcgggagggaacataacacacactctggtgtcccgggtcgggtcggtcgggttacccggagtgaaagtggtgggggcgattctggcgcatccctacttcggcgggaccgacgatgataagatgtggctgtatataaacaaggagaatgaagggttgcaggataggaggttgaagcctgccgcggaggatctgggccggctcgggtgtgagaaggtgttggtgtttgtggcggagaaggaccatttgaacggagtggggaaaagctatgtggaggagctgaagaagagtgggtggaaagggactgtggagatgaaggagaataaagggaaggaacattgctttcatttgggagaaaccaaggatgaacaggctgtggatttgttgaagacagtatgttctttcattaattcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

302

Amino Acids

32.96

Weight (kDa)

6.1

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 2 cut(s) 150, 324
AccB1I GGYRCC 1 cut(s) 68
AccBSI CCGCTC 1 cut(s) 398
AccII CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
AclWI GGATC 3 cut(s) 132, 447, 690
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 794
AcyI GRCGYC 3 cut(s) 132, 147, 321
AfaI GTAC 2 cut(s) 344, 458
AfiI CCNNNNNNNGG 2 cut(s) 534, 593
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 5 cut(s) 32, 469, 667, 742, 880
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 1 cut(s) 389
AleI CACNNNNGTG 1 cut(s) 521
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 3 cut(s) 220, 759, 772
AluI AGCT 3 cut(s) 220, 759, 772
Alw26I GTCTC 3 cut(s) 178, 301, 337
AlwI GGATC 3 cut(s) 132, 447, 690
Ama87I CYCGRG 2 cut(s) 528, 695
AoxI GGCC 5 cut(s) 3, 210, 362, 393, 688
AseI ATTAAT 1 cut(s) 900
AspLEI GCGC 2 cut(s) 497, 583
AspS9I GGNCC 6 cut(s) 211, 363, 393, 600, 688, 733
AsuC2I CCSGG 6 cut(s) 209, 361, 433, 529, 530, 552
AsuHPI GGTGA 2 cut(s) 118, 142
AvaI CYCGRG 2 cut(s) 528, 695
AvaII GGWCC 2 cut(s) 600, 733
BanI GGYRCC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 2 cut(s) 31, 887
BccI CCATC 4 cut(s) 80, 93, 161, 311
BceAI ACGGC 4 cut(s) 82, 259, 304, 314
BciT130I CCWGG 1 cut(s) 391
BcnI CCSGG 6 cut(s) 209, 361, 433, 529, 530, 552
BcoDI GTCTC 3 cut(s) 178, 301, 337
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 7 cut(s) 6, 9, 247, 250, 396, 414, 675
BlsI GCNGC 7 cut(s) 7, 10, 248, 251, 397, 415, 676
Bme1390I CCNGG 7 cut(s) 209, 361, 391, 433, 529, 530, 552
Bme18I GGWCC 2 cut(s) 600, 733
BmeT110I CYCGRG 2 cut(s) 528, 695
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 6 cut(s) 211, 363, 393, 600, 688, 733
BmiI GGNNCC 3 cut(s) 70, 430, 601
BmrFI CCNGG 7 cut(s) 209, 361, 391, 433, 529, 530, 552
BmsI GCATC 2 cut(s) 192, 592
BpiI GAAGAC 2 cut(s) 31, 887
BpuMI CCSGG 6 cut(s) 209, 361, 433, 529, 530, 552
BsaHI GRCGYC 3 cut(s) 132, 147, 321
BsaJI CCNNGG 6 cut(s) 241, 286, 390, 528, 675, 852
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 546, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 534, 593
Bse118I RCCGGY 3 cut(s) 110, 128, 690
Bse3DI GCAATG 1 cut(s) 829
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 6 cut(s) 241, 286, 390, 528, 675, 852
BseGI GGATG 4 cut(s) 72, 85, 583, 862
BseLI CCNNNNNNNGG 2 cut(s) 534, 593
BseMI GCAATG 1 cut(s) 829
BseRI GAGGAG 3 cut(s) 265, 301, 782
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
Bsh1285I CGRYCG 2 cut(s) 339, 543
BshFI GGCC 5 cut(s) 5, 212, 364, 395, 690
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 2 cut(s) 339, 543
BsiHKCI CYCGRG 2 cut(s) 528, 695
BsiSI CCGG 8 cut(s) 111, 129, 209, 361, 432, 529, 552, 691
BslFI GGGAC 5 cut(s) 176, 503, 511, 613, 808
BslI CCNNNNNNNGG 2 cut(s) 534, 593
BsmAI GTCTC 3 cut(s) 178, 301, 337
BsmBI CGTCTC 3 cut(s) 178, 301, 337
BsmFI GGGAC 5 cut(s) 176, 503, 511, 613, 808
BsnI GGCC 5 cut(s) 5, 212, 364, 395, 690
BsoBI CYCGRG 2 cut(s) 528, 695
Bsp143I GATC 4 cut(s) 16, 137, 439, 682
BspANI GGCC 5 cut(s) 5, 212, 364, 395, 690
BspFNI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
BspLI GGNNCC 3 cut(s) 70, 430, 601
BspPI GGATC 3 cut(s) 132, 447, 690
BspT107I GGYRCC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 829
BsrFI RCCGGY 3 cut(s) 110, 128, 690
BssAI RCCGGY 3 cut(s) 110, 128, 690
BssECI CCNNGG 6 cut(s) 241, 286, 390, 528, 675, 852
BssMI GATC 4 cut(s) 16, 137, 439, 682
BssNI GRCGYC 3 cut(s) 132, 147, 321
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 2 cut(s) 799, 886
Bst6I CTCTTC 3 cut(s) 233, 356, 773
BstACI GRCGYC 3 cut(s) 132, 147, 321
BstC8I GCNNGC 7 cut(s) 13, 112, 181, 260, 376, 672, 692
BstDSI CCRYGG 3 cut(s) 241, 286, 675
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 4 cut(s) 72, 85, 583, 862
BstFNI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
BstHHI GCGC 2 cut(s) 497, 583
BstKTI GATC 4 cut(s) 19, 140, 442, 685
BstMAI GTCTC 3 cut(s) 178, 301, 337
BstMBI GATC 4 cut(s) 16, 137, 439, 682
BstMCI CGRYCG 2 cut(s) 339, 543
BstMWI GCNNNNNNNGC 6 cut(s) 51, 209, 255, 419, 492, 578
BstNI CCWGG 1 cut(s) 391
BstNSI RCATGY 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 7 cut(s) 207, 359, 389, 431, 527, 528, 550
BstUI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
BstV2I GAAGAC 2 cut(s) 31, 887
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BsuRI GGCC 5 cut(s) 5, 212, 364, 395, 690
BtgI CCRYGG 3 cut(s) 241, 286, 675
BtgZI GCGATG 1 cut(s) 310
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 4 cut(s) 72, 85, 583, 862
Cac8I GCNNGC 7 cut(s) 13, 112, 181, 260, 376, 672, 692
CfoI GCGC 2 cut(s) 497, 583
Cfr10I RCCGGY 3 cut(s) 110, 128, 690
Cfr13I GGNCC 6 cut(s) 211, 363, 393, 600, 688, 733
Cfr42I CCGCGG 1 cut(s) 678
Cfr9I CCCGGG 1 cut(s) 528
CseI GACGC 2 cut(s) 43, 121
Csp6I GTAC 2 cut(s) 343, 457
CviAII CATG 1 cut(s) 259
CviQI GTAC 2 cut(s) 343, 457
DpnI GATC 4 cut(s) 18, 139, 441, 684
DpnII GATC 4 cut(s) 16, 137, 439, 682
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 233, 356, 773
EarI CTCTTC 3 cut(s) 233, 356, 773
EciI GGCGGA 6 cut(s) 166, 190, 256, 268, 304, 740
Eco130I CCWWGG 1 cut(s) 852
Eco47I GGWCC 2 cut(s) 600, 733
Eco57I CTGAAG 1 cut(s) 794
Eco88I CYCGRG 2 cut(s) 528, 695
Eco91I GGTNACC 1 cut(s) 546
EcoO65I GGTNACC 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 852
Esp3I CGTCTC 3 cut(s) 178, 301, 337
FaeI CATG 1 cut(s) 262
FaiI YATR 8 cut(s) 260, 368, 509, 627, 629, 762, 889, 907
FaqI GGGAC 5 cut(s) 176, 503, 511, 613, 808
FatI CATG 1 cut(s) 258
FauI CCCGC 5 cut(s) 188, 379, 479, 490, 590
Fnu4HI GCNGC 7 cut(s) 6, 9, 247, 250, 396, 414, 675
FokI GGATG 4 cut(s) 59, 72, 570, 869
Fsp4HI GCNGC 7 cut(s) 6, 9, 247, 250, 396, 414, 675
GlaI GCGC 2 cut(s) 496, 582
GluI GCNGC 7 cut(s) 6, 9, 247, 250, 396, 414, 675
GsaI CCCAGC 1 cut(s) 110
HaeIII GGCC 5 cut(s) 5, 212, 364, 395, 690
HapII CCGG 8 cut(s) 111, 129, 209, 361, 432, 529, 552, 691
HgaI GACGC 2 cut(s) 43, 121
HhaI GCGC 2 cut(s) 497, 583
Hin1I GRCGYC 3 cut(s) 132, 147, 321
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 2 cut(s) 495, 581
HinP1I GCGC 2 cut(s) 495, 581
HinfI GANTC 3 cut(s) 348, 386, 574
HpaII CCGG 8 cut(s) 111, 129, 209, 361, 432, 529, 552, 691
HphI GGTGA 2 cut(s) 118, 142
Hpy166II GTNNAC 2 cut(s) 58, 241
Hpy188I TCNGA 3 cut(s) 25, 137, 439
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 2 cut(s) 58, 241
Hpy99I CGWCG 4 cut(s) 29, 119, 323, 608
HpyAV CCTTC 7 cut(s) 103, 280, 638, 700, 724, 802, 817
HpyCH4III ACNGT 2 cut(s) 799, 886
HpyCH4IV ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
HpyCH4V TGCA 3 cut(s) 258, 262, 652
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 209, 255, 419, 492, 578
HpySE526I ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
Hsp92I GRCGYC 3 cut(s) 132, 147, 321
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 2 cut(s) 495, 581
KroI GCCGGC 2 cut(s) 110, 690
KroNI GCCGGC 2 cut(s) 112, 692
KspI CCGCGG 1 cut(s) 678
Kzo9I GATC 4 cut(s) 16, 137, 439, 682
LmnI GCTCC 3 cut(s) 225, 314, 769
LweI GCATC 2 cut(s) 192, 592
MaeII ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
MaeIII GTNAC 2 cut(s) 148, 546
MalI GATC 4 cut(s) 18, 139, 441, 684
MbiI CCGCTC 1 cut(s) 398
MboI GATC 4 cut(s) 16, 137, 439, 682
MboII GAAGA 9 cut(s) 31, 40, 178, 220, 223, 343, 787, 790, 892
MflI RGATCY 1 cut(s) 682
MluCI AATT 1 cut(s) 901
MlyI GAGTC 2 cut(s) 342, 380
MmeI TCCRAC 2 cut(s) 48, 417
MroNI GCCGGC 2 cut(s) 110, 690
MseI TTAA 1 cut(s) 900
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 11, 677
MspI CCGG 8 cut(s) 111, 129, 209, 361, 432, 529, 552, 691
MspR9I CCNGG 7 cut(s) 209, 361, 391, 433, 529, 530, 552
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
MwoI GCNNNNNNNGC 6 cut(s) 51, 209, 255, 419, 492, 578
NaeI GCCGGC 2 cut(s) 112, 692
NciI CCSGG 6 cut(s) 209, 361, 433, 529, 530, 552
NdeII GATC 4 cut(s) 16, 137, 439, 682
NgoMIV GCCGGC 2 cut(s) 110, 690
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 3 cut(s) 70, 430, 601
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 521
PaeI GCATGC 1 cut(s) 262
PcsI WCGNNNNNNNCGW 4 cut(s) 33, 327, 459, 600
PdiI GCCGGC 2 cut(s) 112, 692
PfeI GAWTC 1 cut(s) 574
PkrI GCNGC 7 cut(s) 7, 10, 248, 251, 397, 415, 676
PleI GAGTC 2 cut(s) 342, 380
PpsI GAGTC 2 cut(s) 342, 380
PshBI ATTAAT 1 cut(s) 900
Psp6I CCWGG 1 cut(s) 389
PspEI GGTNACC 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 3 cut(s) 70, 430, 601
PspPI GGNCC 6 cut(s) 211, 363, 393, 600, 688, 733
PsuI RGATCY 1 cut(s) 682
RsaI GTAC 2 cut(s) 344, 458
RsaNI GTAC 2 cut(s) 343, 457
RseI CAYNNNNRTG 1 cut(s) 521
SacII CCGCGG 1 cut(s) 678
SaqAI TTAA 1 cut(s) 900
SatI GCNGC 7 cut(s) 6, 9, 247, 250, 396, 414, 675
Sau3AI GATC 4 cut(s) 16, 137, 439, 682
Sau96I GGNCC 6 cut(s) 211, 363, 393, 600, 688, 733
SchI GAGTC 2 cut(s) 342, 380
ScrFI CCNGG 7 cut(s) 209, 361, 391, 433, 529, 530, 552
SfaNI GCATC 2 cut(s) 192, 592
Sfr303I CCGCGG 1 cut(s) 678
SgrAI CRCCGGYG 1 cut(s) 128
SgrBI CCGCGG 1 cut(s) 678
SinI GGWCC 2 cut(s) 600, 733
SmaI CCCGGG 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 521
SphI GCATGC 1 cut(s) 262
Sse9I AATT 1 cut(s) 901
StyD4I CCNGG 7 cut(s) 207, 359, 389, 431, 527, 528, 550
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 2 cut(s) 799, 886
TaiI ACGT 6 cut(s) 30, 39, 150, 240, 297, 324
TaqI TCGA 2 cut(s) 96, 339
TaqII GACCGA 3 cut(s) 325, 529, 617
TasI AATT 1 cut(s) 901
TauI GCSGC 7 cut(s) 8, 11, 249, 252, 398, 416, 677
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 1 cut(s) 900
Tru9I TTAA 1 cut(s) 900
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 7 cut(s) 469, 657, 821, 827, 873, 886, 894
TspGWI ACGGA 3 cut(s) 360, 441, 759
TspMI CCCGGG 1 cut(s) 528
VpaK11BI GGWCC 2 cut(s) 600, 733
VspI ATTAAT 1 cut(s) 900
XceI RCATGY 1 cut(s) 262
XmaI CCCGGG 1 cut(s) 528
ZraI GACGTC 2 cut(s) 148, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.