Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8313269.1

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 842

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8313269.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 550 bp

cgcggctcacgcgaacggaaccgggtcggatcaatggctaaacgagtacgccgacttgaaccgcgtgttcatcggcggggaaagcgcgggagggaacataacacacactctggtgtcccgggtcggatccgtcgggttacccggagtgaaagtggtgggggcgattctatcgcatccctacttcggcgggaccgatgatgataagatgtggctttacatgaacaaggagaatgaagggttgcaggataggaggctgaagccggccgcggaggatctgaggcgcctcgggtgtgagaaggtgctggtgtttgtggcggagctggatcatttgaacggagtggggaagagttatgtggaggagctgaagaagagtgggtggaaagggagtgtggagatgaaggagaataaggggaaggaccattgctttcatttgcatgacacaaaggatgaacaggctgtggatttggtgaagacaaatgccaatcgcttctccatggcaagcaaggtaagttgctcgagggactgtgggatcttggccgaggcattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

182

Amino Acids

19.89

Weight (kDa)

6.18

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccII	CGCG	5 cut(s)	3, 12, 64, 87, 267
AciI	CCGC	8 cut(s)	3, 62, 76, 87, 187, 265, 267, 315
AclWI	GGATC	6 cut(s)	37, 121, 134, 280, 331, 537
AcoI	YGGCCR	2 cut(s)	262, 535
AcuI	CTGAAG	2 cut(s)	276, 384
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	59, 332
AleI	CACNNNNGTG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	320, 362
AluI	AGCT	2 cut(s)	320, 362
AlwI	GGATC	6 cut(s)	37, 121, 134, 280, 331, 537
Ama87I	CYCGRG	3 cut(s)	118, 285, 515
AoxI	GGCC	2 cut(s)	262, 535
AspLEI	GCGC	2 cut(s)	87, 283
AspS9I	GGNCC	2 cut(s)	190, 416
AsuC2I	CCSGG	4 cut(s)	23, 119, 120, 142
AsuHPI	GGTGA	1 cut(s)	479
AvaI	CYCGRG	3 cut(s)	118, 285, 515
AvaII	GGWCC	2 cut(s)	190, 416
BamHI	GGATCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	477
BcnI	CCSGG	4 cut(s)	23, 119, 120, 142
BfoI	RGCGCY	1 cut(s)	284
BisI	GCNGC	2 cut(s)	4, 265
BlsI	GCNGC	2 cut(s)	5, 266
Bme1390I	CCNGG	4 cut(s)	23, 119, 120, 142
Bme18I	GGWCC	2 cut(s)	190, 416
BmeT110I	CYCGRG	3 cut(s)	118, 285, 515
BmgT120I	GGNCC	2 cut(s)	190, 416
BmiI	GGNNCC	4 cut(s)	20, 128, 191, 282
BmrFI	CCNGG	4 cut(s)	23, 119, 120, 142
BmsI	GCATC	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	477
BpuMI	CCSGG	4 cut(s)	23, 119, 120, 142
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	5 cut(s)	118, 265, 284, 493, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	419
BseDI	CCNNGG	5 cut(s)	118, 265, 284, 493, 538
BseGI	GGATG	2 cut(s)	173, 452
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	372
BseX3I	CGGCCG	1 cut(s)	262
Bsh1236I	CGCG	5 cut(s)	3, 12, 64, 87, 267
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	264, 537
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	265
BsiHKCI	CYCGRG	3 cut(s)	118, 285, 515
BsiSI	CCGG	4 cut(s)	22, 119, 142, 261
BslFI	GGGAC	3 cut(s)	101, 203, 534
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmFI	GGGAC	3 cut(s)	101, 203, 534
BsnI	GGCC	2 cut(s)	264, 537
BsoBI	CYCGRG	3 cut(s)	118, 285, 515
Bsp143I	GATC	5 cut(s)	29, 126, 272, 323, 529
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	8 cut(s)	3, 62, 76, 87, 187, 265, 267, 315
BspANI	GGCC	2 cut(s)	264, 537
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	5 cut(s)	3, 12, 64, 87, 267
BspLI	GGNNCC	4 cut(s)	20, 128, 191, 282
BspPI	GGATC	6 cut(s)	37, 121, 134, 280, 331, 537
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	5 cut(s)	118, 265, 284, 493, 538
BssMI	GATC	5 cut(s)	29, 126, 272, 323, 529
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	493
Bst4CI	ACNGT	1 cut(s)	525
Bst6I	CTCTTC	2 cut(s)	339, 363
BstACI	GRCGYC	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	262, 500
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	2 cut(s)	265, 493
BstEII	GGTNACC	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	173, 452
BstFNI	CGCG	5 cut(s)	3, 12, 64, 87, 267
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	2 cut(s)	87, 283
BstKTI	GATC	5 cut(s)	32, 129, 275, 326, 532
BstMBI	GATC	5 cut(s)	29, 126, 272, 323, 529
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	9, 82
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	4 cut(s)	21, 117, 118, 140
BstUI	CGCG	5 cut(s)	3, 12, 64, 87, 267
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	3 cut(s)	126, 272, 529
BstYI	RGATCY	3 cut(s)	126, 272, 529
BstZI	CGGCCG	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	264, 537
BtgI	CCRYGG	2 cut(s)	265, 493
BtsCI	GGATG	2 cut(s)	173, 452
Cac8I	GCNNGC	2 cut(s)	262, 500
CfoI	GCGC	2 cut(s)	87, 283
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	190, 416
Cfr42I	CCGCGG	1 cut(s)	268
Cfr9I	CCCGGG	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	3 cut(s)	218, 435, 494
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	276
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	5 cut(s)	31, 128, 274, 325, 531
DpnII	GATC	5 cut(s)	29, 126, 272, 323, 529
EaeI	YGGCCR	2 cut(s)	262, 535
EagI	CGGCCG	1 cut(s)	262
Eam1104I	CTCTTC	2 cut(s)	339, 363
EarI	CTCTTC	2 cut(s)	339, 363
EciI	GGCGGA	1 cut(s)	330
EclXI	CGGCCG	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	190, 416
Eco52I	CGGCCG	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	276, 384
Eco88I	CYCGRG	3 cut(s)	118, 285, 515
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	493
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	3 cut(s)	221, 438, 497
FaiI	YATR	5 cut(s)	99, 219, 352, 436, 495
FaqI	GGGAC	3 cut(s)	101, 203, 534
FatI	CATG	3 cut(s)	217, 434, 493
FauI	CCCGC	3 cut(s)	69, 80, 180
Fnu4HI	GCNGC	2 cut(s)	4, 265
FokI	GGATG	2 cut(s)	160, 459
Fsp4HI	GCNGC	2 cut(s)	4, 265
GlaI	GCGC	2 cut(s)	86, 282
GluI	GCNGC	2 cut(s)	4, 265
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	264, 537
HapII	CCGG	4 cut(s)	22, 119, 142, 261
HhaI	GCGC	2 cut(s)	87, 283
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	3 cut(s)	221, 438, 497
Hin6I	GCGC	2 cut(s)	85, 281
HinP1I	GCGC	2 cut(s)	85, 281
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	4 cut(s)	22, 119, 142, 261
HphI	GGTGA	1 cut(s)	479
Hpy188I	TCNGA	3 cut(s)	29, 126, 277
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	4 cut(s)	228, 290, 392, 407
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4V	TGCA	2 cut(s)	242, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	9, 82
HpyF3I	CTNAG	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	3 cut(s)	221, 438, 497
HspAI	GCGC	2 cut(s)	85, 281
KasI	GGCGCC	1 cut(s)	280
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
KspI	CCGCGG	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	29, 126, 272, 323, 529
LmnI	GCTCC	2 cut(s)	317, 359
LpnPI	CCDG	9 cut(s)	35, 96, 132, 155, 228, 274, 288, 306, 438
LweI	GCATC	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	5 cut(s)	31, 128, 274, 325, 531
MboI	GATC	5 cut(s)	29, 126, 272, 323, 529
MboII	GAAGA	4 cut(s)	356, 377, 380, 482
MflI	RGATCY	3 cut(s)	126, 272, 529
Mly113I	GGCGCC	1 cut(s)	281
MmeI	TCCRAC	2 cut(s)	7, 104
MnlI	CCTC	8 cut(s)	84, 244, 263, 271, 294, 350, 511, 533
MroNI	GCCGGC	1 cut(s)	260
MslI	CAYNNNNRTG	2 cut(s)	111, 433
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	4 cut(s)	22, 119, 142, 261
MspR9I	CCNGG	4 cut(s)	23, 119, 120, 142
MvnI	CGCG	5 cut(s)	3, 12, 64, 87, 267
MwoI	GCNNNNNNNGC	2 cut(s)	9, 82
NaeI	GCCGGC	1 cut(s)	262
NarI	GGCGCC	1 cut(s)	281
NciI	CCSGG	4 cut(s)	23, 119, 120, 142
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	5 cut(s)	29, 126, 272, 323, 529
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	221, 438, 497
NlaIV	GGNNCC	4 cut(s)	20, 128, 191, 282
OliI	CACNNNNGTG	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	2 cut(s)	49, 190
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	5, 266
PluTI	GGCGCC	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	136
PspN4I	GGNNCC	4 cut(s)	20, 128, 191, 282
PspPI	GGNCC	2 cut(s)	190, 416
PspXI	VCTCGAGB	1 cut(s)	515
PsuI	RGATCY	3 cut(s)	126, 272, 529
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	2 cut(s)	111, 433
SacII	CCGCGG	1 cut(s)	268
SatI	GCNGC	2 cut(s)	4, 265
Sau3AI	GATC	5 cut(s)	29, 126, 272, 323, 529
Sau96I	GGNCC	2 cut(s)	190, 416
ScrFI	CCNGG	4 cut(s)	23, 119, 120, 142
SetI	ASST	4 cut(s)	301, 322, 364, 508
SfaNI	GCATC	1 cut(s)	182
SfoI	GGCGCC	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	515
Sfr303I	CCGCGG	1 cut(s)	268
SgrBI	CCGCGG	1 cut(s)	268
SinI	GGWCC	2 cut(s)	190, 416
SlaI	CTCGAG	1 cut(s)	515
SmaI	CCCGGG	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	111, 433
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SsiI	CCGC	8 cut(s)	3, 62, 76, 87, 187, 265, 267, 315
SspDI	GGCGCC	1 cut(s)	280
StyD4I	CCNGG	4 cut(s)	21, 117, 118, 140
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	516
TaqII	GACCGA	1 cut(s)	207
TauI	GCSGC	2 cut(s)	6, 267
TfiI	GAWTC	1 cut(s)	164
TspDTI	ATGAA	6 cut(s)	59, 234, 247, 411, 417, 463
TspGWI	ACGGA	3 cut(s)	31, 119, 349
TspMI	CCCGGG	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	190, 416
XhoI	CTCGAG	1 cut(s)	515
XmaI	CCCGGG	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.