Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

55141706 .. 55144086

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAGGGTTGCAGGATAGGAGCCTGGTACCAGCCACAGAGGATCTTCGGCATCTTGGGTGTGAGAGGTGTGTTGATGTTTTTGGCGGAGATCGATGGACCATTTGAAGGGTGGCGGGAAGAGGTATGTGGTGGAGATAAAGAAGAGTGGGTGGAGTGGGGGAGTGTGGAGGTGAAGGAGACTGTGGGGAAAGACCATTGCTTTCACTTGGCTGAACCCAAGGTTGAGCAGACTATGGATTTGTTGAATCTCCGTATAAATCCACACCACACTTACCCAGTAAAACATTCTCAACCAGTCACTCACCCACCACCAACACCACACTCTCTCCGAGATTTCTGCCATGGCCGCCGCCCGGCGATCCCTCCCTACGTCGAACACGTCTTCCGCCTCTTCCGTGTCCACAAAGACGGCACCATCCACCGAACCCATCCCTCCTTCGACAAAATCCCAGCCGTCGACGACCTCACCACCGGCGCGTCCGATCTAAAGACGTCACCATCTCCACCGACCCACCCGTCTCCGCCCGCATCTTCGTCCCCAAAATCCGCCGACCCCGCCCGAAAGCTCCCCCTCCTCTTCTACGTCCACGGCGGGCTGCTTCTCTGTTTGCAGTCCGCCTTCTCCTCCACCTATCACGGCTACGTCTCCACCATCTGCTCTTCCGCCGACGTCATCGCCGTCTCGGTCGAGTACGGACTCTTCCCGACCCCGGCCCATACCCCGCTTGCTACGAGGACTCCTGGCAGCTCTCCAATGGGTCGCGGCTCACGCGAACGGAAACCGGGTCGGATCAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

267

Amino Acids

29.47

Weight (kDa)

8.51

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	517
AatII	GACGTC	2 cut(s)	497, 675
Acc65I	GGTACC	1 cut(s)	27
AccB1I	GGYRCC	2 cut(s)	27, 413
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	3 cut(s)	479, 765, 774
AclWI	GGATC	3 cut(s)	50, 355, 800
AcoI	YGGCCR	1 cut(s)	346
AcyI	GRCGYC	2 cut(s)	494, 672
AfaI	GTAC	2 cut(s)	29, 695
AfiI	CCNNNNNNNGG	3 cut(s)	107, 355, 712
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	107, 247
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	23, 742
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	2 cut(s)	568, 750
AluI	AGCT	2 cut(s)	568, 750
Alw26I	GTCTC	4 cut(s)	173, 525, 652, 688
AlwI	GGATC	3 cut(s)	50, 355, 800
AoxI	GGCC	2 cut(s)	346, 714
ApeKI	GCWGC	2 cut(s)	598, 747
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
Asp718I	GGTACC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	2 cut(s)	98, 715
AsuC2I	CCSGG	3 cut(s)	356, 713, 786
AsuHPI	GGTGA	4 cut(s)	184, 296, 460, 489
AvaII	GGWCC	1 cut(s)	98
BanI	GGYRCC	2 cut(s)	27, 413
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
BbsI	GAAGAC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	585, 759
BccI	CCATC	5 cut(s)	89, 425, 438, 508, 662
BceAI	ACGGC	5 cut(s)	427, 440, 607, 655, 665
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	2 cut(s)	25, 744
BcnI	CCSGG	3 cut(s)	356, 713, 786
BcoDI	GTCTC	4 cut(s)	173, 525, 652, 688
BisI	GCNGC	5 cut(s)	349, 352, 599, 748, 766
BlsI	GCNGC	5 cut(s)	350, 353, 600, 749, 767
Bme1390I	CCNGG	5 cut(s)	25, 356, 713, 744, 786
Bme18I	GGWCC	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	98, 715
BmiI	GGNNCC	3 cut(s)	22, 29, 415
BmrFI	CCNGG	5 cut(s)	25, 356, 713, 744, 786
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	60, 539
BmuI	ACTGGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	376
BpuMI	CCSGG	3 cut(s)	356, 713, 786
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	2 cut(s)	494, 672
BsaJI	CCNNGG	4 cut(s)	219, 343, 589, 711
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 724, 754
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 355, 712
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	2 cut(s)	278, 296
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	25, 744
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	4 cut(s)	219, 343, 589, 711
BseGI	GGATG	2 cut(s)	417, 430
BseLI	CCNNNNNNNGG	3 cut(s)	107, 355, 712
BseMI	GCAATG	1 cut(s)	196
BseNI	ACTGG	2 cut(s)	278, 296
BseRI	GAGGAG	2 cut(s)	566, 616
BseXI	GCAGC	2 cut(s)	585, 759
BseYI	CCCAGC	1 cut(s)	451
Bsh1236I	CGCG	3 cut(s)	479, 765, 774
Bsh1285I	CGRYCG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	348, 716
BshNI	GGYRCC	2 cut(s)	27, 413
BshVI	ATCGAT	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	690
BsiSI	CCGG	4 cut(s)	356, 474, 713, 785
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	3 cut(s)	107, 355, 712
BsmAI	GTCTC	4 cut(s)	173, 525, 652, 688
BsmBI	CGTCTC	3 cut(s)	525, 652, 688
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	348, 716
Bsp143I	GATC	5 cut(s)	42, 90, 360, 484, 792
Bsp19I	CCATGG	1 cut(s)	343
BspANI	GGCC	2 cut(s)	348, 716
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	3 cut(s)	479, 765, 774
BspLI	GGNNCC	3 cut(s)	22, 29, 415
BspPI	GGATC	3 cut(s)	50, 355, 800
BspQI	GCTCTTC	1 cut(s)	667
BspT107I	GGYRCC	2 cut(s)	27, 413
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	278, 296
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	4 cut(s)	219, 343, 589, 711
BssMI	GATC	5 cut(s)	42, 90, 360, 484, 792
BssNI	GRCGYC	2 cut(s)	494, 672
BssT1I	CCWWGG	2 cut(s)	219, 343
Bst2UI	CCWGG	2 cut(s)	25, 744
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	6 cut(s)	114, 138, 398, 584, 667, 707
BstACI	GRCGYC	2 cut(s)	494, 672
BstC8I	GCNNGC	3 cut(s)	528, 596, 729
BstDSI	CCRYGG	2 cut(s)	343, 589
BstF5I	GGATG	2 cut(s)	417, 430
BstFNI	CGCG	3 cut(s)	479, 765, 774
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	5 cut(s)	45, 93, 363, 487, 795
BstMAI	GTCTC	4 cut(s)	173, 525, 652, 688
BstMBI	GATC	5 cut(s)	42, 90, 360, 484, 792
BstMCI	CGRYCG	1 cut(s)	690
BstMWI	GCNNNNNNNGC	3 cut(s)	348, 557, 771
BstNI	CCWGG	2 cut(s)	25, 744
BstSCI	CCNGG	5 cut(s)	23, 354, 711, 742, 784
BstUI	CGCG	3 cut(s)	479, 765, 774
BstV1I	GCAGC	2 cut(s)	585, 759
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	348, 716
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	2 cut(s)	343, 589
BtgZI	GCGATG	1 cut(s)	661
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	417, 430
Cac8I	GCNNGC	3 cut(s)	528, 596, 729
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	98, 715
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	2 cut(s)	28, 694
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	2 cut(s)	28, 694
DpnI	GATC	5 cut(s)	44, 92, 362, 486, 794
DpnII	GATC	5 cut(s)	42, 90, 360, 484, 792
DrdI	GACNNNNNNGTC	1 cut(s)	517
DseDI	GACNNNNNNGTC	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	6 cut(s)	114, 138, 398, 584, 667, 707
EarI	CTCTTC	6 cut(s)	114, 138, 398, 584, 667, 707
EciI	GGCGGA	6 cut(s)	101, 377, 513, 538, 607, 655
Eco130I	CCWWGG	2 cut(s)	219, 343
Eco47I	GGWCC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	23, 742
EcoT14I	CCWWGG	2 cut(s)	219, 343
ErhI	CCWWGG	2 cut(s)	219, 343
Esp3I	CGTCTC	3 cut(s)	525, 652, 688
FaeI	CATG	1 cut(s)	347
FaiI	YATR	5 cut(s)	127, 236, 257, 345, 720
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	1 cut(s)	343
FauI	CCCGC	5 cut(s)	108, 535, 565, 587, 732
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	5 cut(s)	349, 352, 599, 748, 766
FokI	GGATG	2 cut(s)	404, 417
Fsp4HI	GCNGC	5 cut(s)	349, 352, 599, 748, 766
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	5 cut(s)	349, 352, 599, 748, 766
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	348, 716
HapII	CCGG	4 cut(s)	356, 474, 713, 785
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	2 cut(s)	494, 672
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	247, 699, 739
HpaII	CCGG	4 cut(s)	356, 474, 713, 785
HphI	GGTGA	4 cut(s)	184, 296, 460, 489
Hpy166II	GTNNAC	3 cut(s)	403, 460, 589
Hpy188I	TCNGA	3 cut(s)	332, 484, 792
Hpy188III	TCNNGA	1 cut(s)	706
Hpy8I	GTNNAC	3 cut(s)	403, 460, 589
Hpy99I	CGWCG	4 cut(s)	377, 461, 464, 674
HpyAV	CCTTC	4 cut(s)	101, 169, 448, 631
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	6 cut(s)	372, 381, 494, 585, 645, 672
HpyCH4V	TGCA	2 cut(s)	12, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	348, 557, 771
HpySE526I	ACGT	6 cut(s)	372, 381, 494, 585, 645, 672
Hsp92I	GRCGYC	2 cut(s)	494, 672
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	1 cut(s)	477
KpnI	GGTACC	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	42, 90, 360, 484, 792
LguI	GCTCTTC	1 cut(s)	667
LmnI	GCTCC	2 cut(s)	20, 573
Lsp1109I	GCAGC	2 cut(s)	585, 759
LweI	GCATC	2 cut(s)	60, 539
MaeII	ACGT	6 cut(s)	372, 381, 494, 585, 645, 672
MaeIII	GTNAC	2 cut(s)	298, 495
MalI	GATC	5 cut(s)	44, 92, 362, 486, 794
MboI	GATC	5 cut(s)	42, 90, 360, 484, 792
MboII	GAAGA	9 cut(s)	37, 131, 155, 376, 385, 525, 571, 654, 694
MflI	RGATCY	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	693, 733
MmeI	TCCRAC	1 cut(s)	770
MspI	CCGG	4 cut(s)	356, 474, 713, 785
MspR9I	CCNGG	5 cut(s)	25, 356, 713, 744, 786
MvaI	CCWGG	2 cut(s)	25, 744
MvnI	CGCG	3 cut(s)	479, 765, 774
MwoI	GCNNNNNNNGC	3 cut(s)	348, 557, 771
NciI	CCSGG	3 cut(s)	356, 713, 786
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	5 cut(s)	42, 90, 360, 484, 792
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	3 cut(s)	22, 29, 415
NmuCI	GTSAC	2 cut(s)	298, 495
PciSI	GCTCTTC	1 cut(s)	667
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 678
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	5 cut(s)	350, 353, 600, 749, 767
PleI	GAGTC	2 cut(s)	693, 733
PpsI	GAGTC	2 cut(s)	693, 733
Psp6I	CCWGG	2 cut(s)	23, 742
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	2 cut(s)	23, 742
PspN4I	GGNNCC	3 cut(s)	22, 29, 415
PspPI	GGNCC	2 cut(s)	98, 715
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	29, 695
RsaNI	GTAC	2 cut(s)	28, 694
SalI	GTCGAC	1 cut(s)	458
SapI	GCTCTTC	1 cut(s)	667
SatI	GCNGC	5 cut(s)	349, 352, 599, 748, 766
Sau3AI	GATC	5 cut(s)	42, 90, 360, 484, 792
Sau96I	GGNCC	2 cut(s)	98, 715
SchI	GAGTC	2 cut(s)	693, 733
ScrFI	CCNGG	5 cut(s)	25, 356, 713, 744, 786
SfaNI	GCATC	2 cut(s)	60, 539
SgrAI	CRCCGGYG	1 cut(s)	473
SgrDI	CGTCGACG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	98
StyD4I	CCNGG	5 cut(s)	23, 354, 711, 742, 784
StyI	CCWWGG	2 cut(s)	219, 343
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	6 cut(s)	375, 384, 497, 588, 648, 675
TaqI	TCGA	5 cut(s)	93, 375, 441, 459, 690
TaqII	GACCGA	1 cut(s)	676
TauI	GCSGC	3 cut(s)	351, 354, 768
TfiI	GAWTC	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	298, 495
TseI	GCWGC	2 cut(s)	598, 747
Tsp45I	GTSAC	2 cut(s)	298, 495
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	242, 386, 711, 793
VpaK11BI	GGWCC	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	459
ZraI	GACGTC	2 cut(s)	495, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.