Rh6CG086200

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
9420216 .. 9421462
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG086200.1

Sequence Viewer

Length: 960 bp
ATGGCCGCTGCCGGCGATCACTCCGACGTCGAACACGTCTTCCGCTTCTTCCGCGTCCACAAAGACGGCACCATCCACCGAACCCATCAGTCCTTCGACAAAATCCCAGCCGCCGACGACCTAACCACCGGCGTCCGCTCCAAAGACGTCACCATCTCCACCGACCCACCAGTCTCCGCCCGCATCTTCGTCCCCAAATCCGCCGACCCGACCCGAAAACTCCCCCTCCTCTTCTACGTCCACGGCGGGGGCTTCTGCATGCAGTCCGCCTTCTCCTCCAGATACCACGGCTACGTCTCCACCATCTGCTCTTCCGCCGACGTCATCGCCGTCTCGGTCGAGTACGGACTCTTCCCGACCCGGCCCATACCCGCTTGCTACGAGGACTCCTGGGCCGCTCTCCAATGGGTCGCGGCTCACGCGAACGGAACCGGGTCGGATCAATGGCTAAACGAGTACGCCGACTTGAACCGCGTGTTCATCGGCGGGGAAAGCGCGGGAGGGAACATAACACACACTCTGGTGTCCCGGGTCGGATCCGTCGGGTTACCCGGAGTGAAAGTGGTGGGGGCGATTCTATCGCATCCCTACTTCGGCGGGACCGATGATGATAAGATGTGGCTTTACATGAACAAGGAGAATGAAGGGTTGCAGGATAGGAGGCTGAAGCCGGCCGCGGAGGATCTGAGGCGGCTCGGGTGTGAGAAGGTGTTGGTGTTTGTGGCGGAGAAGGATCATTTGAACGGAGTGGGGAAGAGCTATGTGGAGGAGCTGAAGAAGAGTGGGTGGAAAGGGAGTGTGGAGATGAAGGAGAATAAGGGGAAGGACCATTGCTTTCATTTGCATGACACAAAGGATGAGCAGGCTGTGGATTTGGTGAAGACAAATGCCAATCGCTTCTCCATGGCAAGCAAGGTAAGTTGCTCGAGGGACTGTGGGATCTTGGCCGAGGAATTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

319

Amino Acids

35.08

Weight (kDa)

6.39

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 62 - 171 6.7e-10 BD-FAE
COesterase PF00135 62 - 177 5.2e-09 Carboxylesterase family
Abhydrolase_3 PF07859 77 - 280 8.5e-38 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 3 cut(s) 30, 150, 324
AccB1I GGYRCC 1 cut(s) 68
AccBSI CCGCTC 2 cut(s) 138, 398
AccII CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
AclWI GGATC 6 cut(s) 447, 531, 544, 690, 741, 947
AcoI YGGCCR 3 cut(s) 3, 672, 945
AcuI CTGAAG 2 cut(s) 686, 794
AcyI GRCGYC 4 cut(s) 27, 132, 147, 321
AfaI GTAC 2 cut(s) 344, 458
AfiI CCNNNNNNNGG 2 cut(s) 247, 593
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 2 cut(s) 469, 742
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 1 cut(s) 389
AleI CACNNNNGTG 1 cut(s) 521
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 2 cut(s) 759, 772
AluI AGCT 2 cut(s) 759, 772
Alw26I GTCTC 3 cut(s) 178, 301, 337
AlwI GGATC 6 cut(s) 447, 531, 544, 690, 741, 947
Ama87I CYCGRG 3 cut(s) 528, 695, 925
AoxI GGCC 5 cut(s) 3, 362, 393, 672, 945
ApeKI GCWGC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 4 cut(s) 363, 393, 600, 826
AsuC2I CCSGG 5 cut(s) 361, 433, 529, 530, 552
AsuHPI GGTGA 2 cut(s) 142, 889
AvaI CYCGRG 3 cut(s) 528, 695, 925
AvaII GGWCC 2 cut(s) 600, 826
BamHI GGATCC 1 cut(s) 536
BanI GGYRCC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 2 cut(s) 31, 887
BccI CCATC 4 cut(s) 80, 93, 161, 311
BceAI ACGGC 4 cut(s) 82, 259, 304, 314
BciT130I CCWGG 1 cut(s) 391
BcnI CCSGG 5 cut(s) 361, 433, 529, 530, 552
BcoDI GTCTC 3 cut(s) 178, 301, 337
BisI GCNGC 7 cut(s) 6, 9, 111, 396, 414, 675, 692
BlsI GCNGC 7 cut(s) 7, 10, 112, 397, 415, 676, 693
Bme1390I CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
Bme18I GGWCC 2 cut(s) 600, 826
BmeT110I CYCGRG 3 cut(s) 528, 695, 925
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 4 cut(s) 363, 393, 600, 826
BmiI GGNNCC 4 cut(s) 70, 430, 538, 601
BmrFI CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
BmsI GCATC 2 cut(s) 192, 592
BpiI GAAGAC 2 cut(s) 31, 887
BpmI CTGGAG 1 cut(s) 262
BpuMI CCSGG 5 cut(s) 361, 433, 529, 530, 552
BsaHI GRCGYC 4 cut(s) 27, 132, 147, 321
BsaJI CCNNGG 7 cut(s) 241, 286, 390, 528, 675, 903, 948
BsaXI ACNNNNNCTCC 6 cut(s) 210, 240, 371, 401, 546, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 593
Bse118I RCCGGY 3 cut(s) 11, 128, 670
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 829
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 7 cut(s) 241, 286, 390, 528, 675, 903, 948
BseGI GGATG 3 cut(s) 72, 583, 862
BseLI CCNNNNNNNGG 2 cut(s) 247, 593
BseMI GCAATG 1 cut(s) 829
BseMII CTCAG 1 cut(s) 677
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 3 cut(s) 218, 265, 782
BseX3I CGGCCG 1 cut(s) 672
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
Bsh1285I CGRYCG 2 cut(s) 339, 675
BshFI GGCC 5 cut(s) 5, 364, 395, 674, 947
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 2 cut(s) 339, 675
BsiHKCI CYCGRG 3 cut(s) 528, 695, 925
BsiSI CCGG 7 cut(s) 12, 129, 361, 432, 529, 552, 671
BslFI GGGAC 4 cut(s) 176, 511, 613, 944
BslI CCNNNNNNNGG 2 cut(s) 247, 593
BsmAI GTCTC 3 cut(s) 178, 301, 337
BsmBI CGTCTC 2 cut(s) 301, 337
BsmFI GGGAC 4 cut(s) 176, 511, 613, 944
BsnI GGCC 5 cut(s) 5, 364, 395, 674, 947
BsoBI CYCGRG 3 cut(s) 528, 695, 925
Bsp143I GATC 6 cut(s) 16, 439, 536, 682, 733, 939
Bsp19I CCATGG 1 cut(s) 903
BspANI GGCC 5 cut(s) 5, 364, 395, 674, 947
BspCNI CTCAG 1 cut(s) 678
BspFNI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
BspLI GGNNCC 4 cut(s) 70, 430, 538, 601
BspPI GGATC 6 cut(s) 447, 531, 544, 690, 741, 947
BspQI GCTCTTC 2 cut(s) 316, 749
BspT107I GGYRCC 1 cut(s) 68
BsrBI CCGCTC 2 cut(s) 138, 398
BsrDI GCAATG 1 cut(s) 829
BsrFI RCCGGY 3 cut(s) 11, 128, 670
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 3 cut(s) 11, 128, 670
BssECI CCNNGG 7 cut(s) 241, 286, 390, 528, 675, 903, 948
BssMI GATC 6 cut(s) 16, 439, 536, 682, 733, 939
BssNI GRCGYC 4 cut(s) 27, 132, 147, 321
BssT1I CCWWGG 1 cut(s) 903
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 935
Bst6I CTCTTC 5 cut(s) 236, 316, 356, 749, 773
BstACI GRCGYC 4 cut(s) 27, 132, 147, 321
BstC8I GCNNGC 7 cut(s) 13, 181, 260, 376, 672, 864, 910
BstDEI CTNAG 1 cut(s) 686
BstDSI CCRYGG 4 cut(s) 241, 286, 675, 903
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 3 cut(s) 72, 583, 862
BstFNI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 6 cut(s) 19, 442, 539, 685, 736, 942
BstMAI GTCTC 3 cut(s) 178, 301, 337
BstMBI GATC 6 cut(s) 16, 439, 536, 682, 733, 939
BstMCI CGRYCG 2 cut(s) 339, 675
BstMWI GCNNNNNNNGC 3 cut(s) 51, 419, 492
BstNI CCWGG 1 cut(s) 391
BstNSI RCATGY 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 6 cut(s) 359, 389, 431, 527, 528, 550
BstUI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
BstV2I GAAGAC 2 cut(s) 31, 887
BstX2I RGATCY 3 cut(s) 536, 682, 939
BstYI RGATCY 3 cut(s) 536, 682, 939
BstZI CGGCCG 1 cut(s) 672
BsuRI GGCC 5 cut(s) 5, 364, 395, 674, 947
BtgI CCRYGG 4 cut(s) 241, 286, 675, 903
BtgZI GCGATG 1 cut(s) 310
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 3 cut(s) 72, 583, 862
Cac8I GCNNGC 7 cut(s) 13, 181, 260, 376, 672, 864, 910
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 3 cut(s) 11, 128, 670
Cfr13I GGNCC 4 cut(s) 363, 393, 600, 826
Cfr42I CCGCGG 1 cut(s) 678
Cfr9I CCCGGG 1 cut(s) 528
CseI GACGC 2 cut(s) 43, 121
Csp6I GTAC 2 cut(s) 343, 457
CviAII CATG 4 cut(s) 259, 628, 845, 904
CviQI GTAC 2 cut(s) 343, 457
DdeI CTNAG 1 cut(s) 686
DpnI GATC 6 cut(s) 18, 441, 538, 684, 735, 941
DpnII GATC 6 cut(s) 16, 439, 536, 682, 733, 939
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 3 cut(s) 3, 672, 945
EagI CGGCCG 1 cut(s) 672
Eam1104I CTCTTC 5 cut(s) 236, 316, 356, 749, 773
EarI CTCTTC 5 cut(s) 236, 316, 356, 749, 773
EciI GGCGGA 5 cut(s) 166, 190, 256, 304, 740
EclXI CGGCCG 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 903
Eco47I GGWCC 2 cut(s) 600, 826
Eco52I CGGCCG 1 cut(s) 672
Eco57I CTGAAG 2 cut(s) 686, 794
Eco88I CYCGRG 3 cut(s) 528, 695, 925
Eco91I GGTNACC 1 cut(s) 546
EcoO65I GGTNACC 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 903
ErhI CCWWGG 1 cut(s) 903
Esp3I CGTCTC 2 cut(s) 301, 337
FaeI CATG 4 cut(s) 262, 631, 848, 907
FaiI YATR 7 cut(s) 260, 368, 509, 629, 762, 846, 905
FaqI GGGAC 4 cut(s) 176, 511, 613, 944
FatI CATG 4 cut(s) 258, 627, 844, 903
FauI CCCGC 6 cut(s) 188, 239, 379, 479, 490, 590
Fnu4HI GCNGC 7 cut(s) 6, 9, 111, 396, 414, 675, 692
FokI GGATG 3 cut(s) 59, 570, 869
Fsp4HI GCNGC 7 cut(s) 6, 9, 111, 396, 414, 675, 692
GlaI GCGC 1 cut(s) 496
GluI GCNGC 7 cut(s) 6, 9, 111, 396, 414, 675, 692
GsaI CCCAGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 5 cut(s) 5, 364, 395, 674, 947
HapII CCGG 7 cut(s) 12, 129, 361, 432, 529, 552, 671
HgaI GACGC 2 cut(s) 43, 121
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 4 cut(s) 27, 132, 147, 321
Hin1II CATG 4 cut(s) 262, 631, 848, 907
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HinfI GANTC 3 cut(s) 348, 386, 574
HpaII CCGG 7 cut(s) 12, 129, 361, 432, 529, 552, 671
HphI GGTGA 2 cut(s) 142, 889
Hpy166II GTNNAC 2 cut(s) 58, 241
Hpy188I TCNGA 4 cut(s) 25, 439, 536, 687
Hpy188III TCNNGA 2 cut(s) 279, 355
Hpy8I GTNNAC 2 cut(s) 58, 241
Hpy99I CGWCG 5 cut(s) 29, 32, 119, 323, 545
HpyAV CCTTC 7 cut(s) 103, 280, 638, 700, 724, 802, 817
HpyCH4III ACNGT 1 cut(s) 935
HpyCH4IV ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
HpyCH4V TGCA 4 cut(s) 258, 262, 652, 844
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 419, 492
HpyF3I CTNAG 1 cut(s) 686
HpySE526I ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
Hsp92I GRCGYC 4 cut(s) 27, 132, 147, 321
Hsp92II CATG 4 cut(s) 262, 631, 848, 907
HspAI GCGC 1 cut(s) 495
KroI GCCGGC 2 cut(s) 11, 670
KroNI GCCGGC 2 cut(s) 13, 672
KspI CCGCGG 1 cut(s) 678
Kzo9I GATC 6 cut(s) 16, 439, 536, 682, 733, 939
LguI GCTCTTC 2 cut(s) 316, 749
LmnI GCTCC 2 cut(s) 143, 769
LweI GCATC 2 cut(s) 192, 592
MaeII ACGT 6 cut(s) 27, 36, 147, 237, 294, 321
MaeIII GTNAC 2 cut(s) 148, 546
MalI GATC 6 cut(s) 18, 441, 538, 684, 735, 941
MbiI CCGCTC 2 cut(s) 138, 398
MboI GATC 6 cut(s) 16, 439, 536, 682, 733, 939
MflI RGATCY 3 cut(s) 536, 682, 939
MluCI AATT 1 cut(s) 953
MlyI GAGTC 2 cut(s) 342, 380
MmeI TCCRAC 3 cut(s) 48, 417, 514
MroNI GCCGGC 2 cut(s) 11, 670
MslI CAYNNNNRTG 2 cut(s) 521, 843
MspA1I CMGCKG 2 cut(s) 8, 677
MspI CCGG 7 cut(s) 12, 129, 361, 432, 529, 552, 671
MspR9I CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 6 cut(s) 54, 413, 422, 474, 497, 677
MwoI GCNNNNNNNGC 3 cut(s) 51, 419, 492
NaeI GCCGGC 2 cut(s) 13, 672
NciI CCSGG 5 cut(s) 361, 433, 529, 530, 552
NcoI CCATGG 1 cut(s) 903
NdeII GATC 6 cut(s) 16, 439, 536, 682, 733, 939
NgoMIV GCCGGC 2 cut(s) 11, 670
NlaIII CATG 4 cut(s) 262, 631, 848, 907
NlaIV GGNNCC 4 cut(s) 70, 430, 538, 601
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 521
PaeI GCATGC 1 cut(s) 262
PaeR7I CTCGAG 1 cut(s) 925
PciSI GCTCTTC 2 cut(s) 316, 749
PcsI WCGNNNNNNNCGW 4 cut(s) 33, 327, 459, 600
PdiI GCCGGC 2 cut(s) 13, 672
PfeI GAWTC 1 cut(s) 574
PkrI GCNGC 7 cut(s) 7, 10, 112, 397, 415, 676, 693
PleI GAGTC 2 cut(s) 342, 380
PpsI GAGTC 2 cut(s) 342, 380
Psp6I CCWGG 1 cut(s) 389
PspEI GGTNACC 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 4 cut(s) 70, 430, 538, 601
PspPI GGNCC 4 cut(s) 363, 393, 600, 826
PspXI VCTCGAGB 1 cut(s) 925
PsuI RGATCY 3 cut(s) 536, 682, 939
RsaI GTAC 2 cut(s) 344, 458
RsaNI GTAC 2 cut(s) 343, 457
RseI CAYNNNNRTG 2 cut(s) 521, 843
SacII CCGCGG 1 cut(s) 678
SapI GCTCTTC 2 cut(s) 316, 749
SatI GCNGC 7 cut(s) 6, 9, 111, 396, 414, 675, 692
Sau3AI GATC 6 cut(s) 16, 439, 536, 682, 733, 939
Sau96I GGNCC 4 cut(s) 363, 393, 600, 826
SchI GAGTC 2 cut(s) 342, 380
ScrFI CCNGG 6 cut(s) 361, 391, 433, 529, 530, 552
SfaNI GCATC 2 cut(s) 192, 592
Sfr274I CTCGAG 1 cut(s) 925
Sfr303I CCGCGG 1 cut(s) 678
SgrAI CRCCGGYG 1 cut(s) 128
SgrBI CCGCGG 1 cut(s) 678
SinI GGWCC 2 cut(s) 600, 826
SlaI CTCGAG 1 cut(s) 925
SmaI CCCGGG 1 cut(s) 530
SmiMI CAYNNNNRTG 2 cut(s) 521, 843
SmlI CTYRAG 1 cut(s) 925
SmoI CTYRAG 1 cut(s) 925
SphI GCATGC 1 cut(s) 262
Sse9I AATT 1 cut(s) 953
StyD4I CCNGG 6 cut(s) 359, 389, 431, 527, 528, 550
StyI CCWWGG 1 cut(s) 903
TaaI ACNGT 1 cut(s) 935
TaiI ACGT 6 cut(s) 30, 39, 150, 240, 297, 324
TaqI TCGA 4 cut(s) 30, 96, 339, 926
TaqII GACCGA 2 cut(s) 325, 617
TasI AATT 1 cut(s) 953
TauI GCSGC 6 cut(s) 8, 113, 398, 416, 677, 694
TfiI GAWTC 1 cut(s) 574
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 5 cut(s) 469, 644, 657, 821, 827
TspGWI ACGGA 4 cut(s) 360, 441, 529, 759
TspMI CCCGGG 1 cut(s) 528
VpaK11BI GGWCC 2 cut(s) 600, 826
XceI RCATGY 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 925
XmaI CCCGGG 1 cut(s) 528
ZraI GACGTC 3 cut(s) 28, 148, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.