RchiOBHm_Chr6g0258441

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003936
Physical Location & Seq
Reverse (-)
13737808 .. 13738329
522 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23172

Sequence Viewer

Length: 297 bp
ATGTGGCTGTACATGAATAAGGAGAATGAAGGGTTGCAGGATAGGAGGTTGGTACCGGCCGCACAGGATCTTCGGCATCTTGGGTGTGAGAGGGTGTTGGTGTTTTTGGCGGAGATGGACCATTTGAAGGGTGGCGGGAAGAGGTATGTGGAGGAGCTAAAGAAGAGTGGGTGGAGTGGGAGTGTGGAGGTGAAGGAGACTGTGGGGAAAGACCATTGCTTTCACTTGGCCGAACCCAAGGATCAGCAGACTATGGATTTGGTCAAGAAAATTGCTTCTTTTATTAATCTACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

98

Amino Acids

11.28

Weight (kDa)

6.96

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 4 - 75 5.5e-07 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 52
AciI CCGC 3 cut(s) 60, 110, 135
AclWI GGATC 2 cut(s) 75, 249
AcoI YGGCCR 2 cut(s) 57, 228
AfaI GTAC 2 cut(s) 11, 54
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 75, 249
AoxI GGCC 2 cut(s) 57, 228
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
AseI ATTAAT 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 52
BccI CCATC 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 54
BmsI GCATC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 167
BseX3I CGGCCG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 59, 230
BshNI GGYRCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 2 cut(s) 59, 230
Bsp1407I TGTACA 1 cut(s) 9
Bsp143I GATC 2 cut(s) 67, 241
BspACI CCGC 3 cut(s) 60, 110, 135
BspANI GGCC 2 cut(s) 59, 230
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 2 cut(s) 75, 249
BspT107I GGYRCC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 55
BsrGI TGTACA 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 67, 241
BssT1I CCWWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 134, 158
BstAUI TGTACA 1 cut(s) 9
BstKTI GATC 2 cut(s) 70, 244
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 67, 241
BstMCI CGRYCG 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 59, 230
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 10, 53
CviAII CATG 1 cut(s) 13
CviJI RGCY 4 cut(s) 7, 59, 157, 230
CviKI_1 RGCY 4 cut(s) 7, 59, 157, 230
CviQI GTAC 2 cut(s) 10, 53
DpnI GATC 2 cut(s) 69, 243
DpnII GATC 2 cut(s) 67, 241
EaeI YGGCCR 2 cut(s) 57, 228
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 134, 158
EarI CTCTTC 2 cut(s) 134, 158
EciI GGCGGA 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 118
Eco52I CGGCCG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 16
FaiI YATR 3 cut(s) 14, 147, 254
FatI CATG 1 cut(s) 12
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 295
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 2 cut(s) 59, 230
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 16
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 265
HpyAV CCTTC 3 cut(s) 23, 121, 187
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 37
Hsp92II CATG 1 cut(s) 16
KpnI GGTACC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 67, 241
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 23, 50, 69
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 295
MalI GATC 2 cut(s) 69, 243
MboI GATC 2 cut(s) 67, 241
MboII GAAGA 3 cut(s) 62, 151, 175
MflI RGATCY 1 cut(s) 67
MluCI AATT 1 cut(s) 270
MnlI CCTC 5 cut(s) 39, 84, 135, 145, 181
MseI TTAA 1 cut(s) 285
MspI CCGG 1 cut(s) 56
NdeII GATC 2 cut(s) 67, 241
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 2 cut(s) 11, 54
RsaNI GTAC 2 cut(s) 10, 53
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 67, 241
Sau96I GGNCC 1 cut(s) 118
SetI ASST 4 cut(s) 50, 146, 159, 192
SfaNI GCATC 1 cut(s) 85
SgeI CNNG 9 cut(s) 25, 50, 68, 77, 92, 148, 238, 250, 277
SinI GGWCC 1 cut(s) 118
Sse9I AATT 1 cut(s) 270
SsiI CCGC 3 cut(s) 60, 110, 135
SspMI CTAG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 202
TasI AATT 1 cut(s) 270
TatI WGTACW 1 cut(s) 9
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 29, 42
VpaK11BI GGWCC 1 cut(s) 118
VspI ATTAAT 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.