Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

9440647 .. 9441555

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG086300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCCGCCGCCGGCGATCACTCCGACGTCGAACACGTCTTCCGCCTCTTCCGCGTCCACAAAGACGGCACCATCCACCGAACCCATCCCTCCTTCGACAAAATCCCAGCCGTCGACGACCTCACCACCGGCGTCCGATCCAAAGACGTCACCATCTCCACCGACCCACCCGTCTCCGCCCGCATCTTCGTCCCCAAATCCGCCGACCCGGCCCGAAAGCTCCCCCTCCTCTTCTACATCCACGGCGGCGGCTTCTGTTTGCAGTCCGCCTTCTCCTCCACCTATCACGGCTACGTCTCCACCATCTGCTCCTCCGCCGACGTCATCGCCGTCTCGGTCGAGTACGGACTCTTCCCGACCCGGCCCATACCCGCTTGCTACGAGGACTCCTGGGCCGCTCTCCAATGGGTCACGGCTCACGCGAACGGAACCGGGTCGGATCAATGGCTAAACGAGTACGCCGACTTGAACCGCGTGTTCATCGGCGGGGACAGCGCGGGAGGGAACATAACACACACTCTGGTGTCTCGGGTCGGGTCGGTCGGGTTACCCGGAGTGAAAGTGGTTGGGGCGATTCTGGCACATCCCTACTTCGGCGGGACCGACGATGATAAGATGTGGCTTTTCATGAACAAGGAGAATGAAGGGTTGCAGGATAGGAGGTTGAAGCCGGCCGCGGAGGATCTGAGGCGGCTCGGGTGTGAGAAGGTGTTGGTGTTTGTGGCGGAGAAGGACCGTTTTAACGGAGTGGGGAAAAGCTATGTGGAGGAGCTGAAGAAGAGTGGGTGGAAAGGGAGTGTGGAGATGAAGGAGAATAAGGGGAAGGACCATTGCTTTCATTTGTATGACCCAAAGGATGAGCAGGCTGTGGATTTGGTGAAGACAGTATGTTCTTTCATTAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

302

Amino Acids

33.18

Weight (kDa)

6.3

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	62 - 171	4.4e-10	BD-FAE
COesterase	PF00135	62 - 177	1.1e-08	Carboxylesterase family
Abhydrolase_3	PF07859	77 - 280	5.6e-38	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	3 cut(s)	30, 150, 324
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	5 cut(s)	54, 422, 474, 497, 677
AclWI	GGATC	3 cut(s)	132, 447, 690
AcoI	YGGCCR	2 cut(s)	3, 672
AcuI	CTGAAG	1 cut(s)	794
AcyI	GRCGYC	4 cut(s)	27, 132, 147, 321
AfaI	GTAC	2 cut(s)	344, 458
AfiI	CCNNNNNNNGG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	469, 667
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	389
AleI	CACNNNNGTG	1 cut(s)	521
AloI	GAACNNNNNNTCC	2 cut(s)	24, 56
AluBI	AGCT	3 cut(s)	220, 759, 772
AluI	AGCT	3 cut(s)	220, 759, 772
Alw26I	GTCTC	4 cut(s)	178, 301, 337, 531
AlwI	GGATC	3 cut(s)	132, 447, 690
Ama87I	CYCGRG	2 cut(s)	528, 695
AoxI	GGCC	5 cut(s)	3, 210, 362, 393, 672
AseI	ATTAAT	1 cut(s)	900
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	6 cut(s)	211, 363, 393, 600, 733, 826
AsuC2I	CCSGG	4 cut(s)	209, 361, 433, 552
AsuHPI	GGTGA	3 cut(s)	115, 142, 889
AvaI	CYCGRG	2 cut(s)	528, 695
AvaII	GGWCC	3 cut(s)	600, 733, 826
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BbsI	GAAGAC	2 cut(s)	31, 887
BccI	CCATC	4 cut(s)	80, 93, 161, 311
BceAI	ACGGC	6 cut(s)	82, 95, 259, 304, 314, 429
BciT130I	CCWGG	1 cut(s)	391
BcnI	CCSGG	4 cut(s)	209, 361, 433, 552
BcoDI	GTCTC	4 cut(s)	178, 301, 337, 531
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	7 cut(s)	6, 9, 247, 250, 396, 675, 692
BlsI	GCNGC	7 cut(s)	7, 10, 248, 251, 397, 676, 693
Bme1390I	CCNGG	5 cut(s)	209, 361, 391, 433, 552
Bme18I	GGWCC	3 cut(s)	600, 733, 826
BmeT110I	CYCGRG	2 cut(s)	528, 695
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	6 cut(s)	211, 363, 393, 600, 733, 826
BmiI	GGNNCC	3 cut(s)	70, 430, 601
BmrFI	CCNGG	5 cut(s)	209, 361, 391, 433, 552
BmsI	GCATC	1 cut(s)	192
BpiI	GAAGAC	2 cut(s)	31, 887
BpuMI	CCSGG	4 cut(s)	209, 361, 433, 552
BsaHI	GRCGYC	4 cut(s)	27, 132, 147, 321
BsaJI	CCNNGG	3 cut(s)	241, 390, 675
BsaXI	ACNNNNNCTCC	4 cut(s)	371, 401, 546, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse118I	RCCGGY	3 cut(s)	11, 128, 670
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	3 cut(s)	241, 390, 675
BseGI	GGATG	5 cut(s)	72, 85, 237, 583, 862
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	1 cut(s)	677
BseRI	GAGGAG	4 cut(s)	218, 265, 301, 782
BseX3I	CGGCCG	1 cut(s)	672
BseYI	CCCAGC	1 cut(s)	106
Bsh1236I	CGCG	5 cut(s)	54, 422, 474, 497, 677
Bsh1285I	CGRYCG	3 cut(s)	339, 543, 675
BshFI	GGCC	5 cut(s)	5, 212, 364, 395, 674
BshNI	GGYRCC	1 cut(s)	68
BsiEI	CGRYCG	3 cut(s)	339, 543, 675
BsiHKCI	CYCGRG	2 cut(s)	528, 695
BsiSI	CCGG	7 cut(s)	12, 129, 209, 361, 432, 552, 671
BslFI	GGGAC	3 cut(s)	176, 503, 613
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	4 cut(s)	178, 301, 337, 531
BsmBI	CGTCTC	3 cut(s)	178, 301, 337
BsmFI	GGGAC	3 cut(s)	176, 503, 613
BsnI	GGCC	5 cut(s)	5, 212, 364, 395, 674
BsoBI	CYCGRG	2 cut(s)	528, 695
Bsp143I	GATC	4 cut(s)	16, 137, 439, 682
BspANI	GGCC	5 cut(s)	5, 212, 364, 395, 674
BspCNI	CTCAG	1 cut(s)	678
BspFNI	CGCG	5 cut(s)	54, 422, 474, 497, 677
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	3 cut(s)	70, 430, 601
BspPI	GGATC	3 cut(s)	132, 447, 690
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	829
BsrFI	RCCGGY	3 cut(s)	11, 128, 670
BssAI	RCCGGY	3 cut(s)	11, 128, 670
BssECI	CCNNGG	3 cut(s)	241, 390, 675
BssMI	GATC	4 cut(s)	16, 137, 439, 682
BssNI	GRCGYC	4 cut(s)	27, 132, 147, 321
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	737, 886
Bst6I	CTCTTC	4 cut(s)	53, 236, 356, 773
BstACI	GRCGYC	4 cut(s)	27, 132, 147, 321
BstC8I	GCNNGC	5 cut(s)	13, 181, 376, 672, 864
BstDEI	CTNAG	1 cut(s)	686
BstDSI	CCRYGG	2 cut(s)	241, 675
BstEII	GGTNACC	1 cut(s)	546
BstF5I	GGATG	5 cut(s)	72, 85, 237, 583, 862
BstFNI	CGCG	5 cut(s)	54, 422, 474, 497, 677
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	4 cut(s)	19, 140, 442, 685
BstMAI	GTCTC	4 cut(s)	178, 301, 337, 531
BstMBI	GATC	4 cut(s)	16, 137, 439, 682
BstMCI	CGRYCG	3 cut(s)	339, 543, 675
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 209, 492, 578
BstNI	CCWGG	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	546
BstSCI	CCNGG	5 cut(s)	207, 359, 389, 431, 550
BstUI	CGCG	5 cut(s)	54, 422, 474, 497, 677
BstV2I	GAAGAC	2 cut(s)	31, 887
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BstZI	CGGCCG	1 cut(s)	672
BsuRI	GGCC	5 cut(s)	5, 212, 364, 395, 674
BtgI	CCRYGG	2 cut(s)	241, 675
BtgZI	GCGATG	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	5 cut(s)	72, 85, 237, 583, 862
Cac8I	GCNNGC	5 cut(s)	13, 181, 376, 672, 864
CciI	TCATGA	1 cut(s)	627
CfoI	GCGC	1 cut(s)	497
Cfr10I	RCCGGY	3 cut(s)	11, 128, 670
Cfr13I	GGNCC	6 cut(s)	211, 363, 393, 600, 733, 826
Cfr42I	CCGCGG	1 cut(s)	678
CseI	GACGC	2 cut(s)	43, 121
Csp6I	GTAC	2 cut(s)	343, 457
CviAII	CATG	1 cut(s)	628
CviQI	GTAC	2 cut(s)	343, 457
DdeI	CTNAG	1 cut(s)	686
DpnI	GATC	4 cut(s)	18, 139, 441, 684
DpnII	GATC	4 cut(s)	16, 137, 439, 682
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	2 cut(s)	3, 672
EagI	CGGCCG	1 cut(s)	672
Eam1104I	CTCTTC	4 cut(s)	53, 236, 356, 773
EarI	CTCTTC	4 cut(s)	53, 236, 356, 773
EciI	GGCGGA	6 cut(s)	32, 166, 190, 256, 304, 740
EclXI	CGGCCG	1 cut(s)	672
Eco47I	GGWCC	3 cut(s)	600, 733, 826
Eco52I	CGGCCG	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	794
Eco88I	CYCGRG	2 cut(s)	528, 695
Eco91I	GGTNACC	1 cut(s)	546
EcoO65I	GGTNACC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	389
Esp3I	CGTCTC	3 cut(s)	178, 301, 337
FaeI	CATG	1 cut(s)	631
FaiI	YATR	7 cut(s)	368, 509, 629, 762, 846, 889, 907
FaqI	GGGAC	3 cut(s)	176, 503, 613
FatI	CATG	1 cut(s)	627
FauI	CCCGC	5 cut(s)	188, 379, 479, 490, 590
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	7 cut(s)	6, 9, 247, 250, 396, 675, 692
FokI	GGATG	5 cut(s)	59, 72, 224, 570, 869
Fsp4HI	GCNGC	7 cut(s)	6, 9, 247, 250, 396, 675, 692
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	7 cut(s)	6, 9, 247, 250, 396, 675, 692
GsaI	CCCAGC	1 cut(s)	110
HaeIII	GGCC	5 cut(s)	5, 212, 364, 395, 674
HapII	CCGG	7 cut(s)	12, 129, 209, 361, 432, 552, 671
HgaI	GACGC	2 cut(s)	43, 121
HhaI	GCGC	1 cut(s)	497
Hin1I	GRCGYC	4 cut(s)	27, 132, 147, 321
Hin1II	CATG	1 cut(s)	631
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	348, 386, 574
HpaII	CCGG	7 cut(s)	12, 129, 209, 361, 432, 552, 671
HphI	GGTGA	3 cut(s)	115, 142, 889
Hpy166II	GTNNAC	2 cut(s)	58, 115
Hpy188I	TCNGA	4 cut(s)	25, 137, 439, 687
Hpy188III	TCNNGA	2 cut(s)	355, 628
Hpy8I	GTNNAC	2 cut(s)	58, 115
Hpy99I	CGWCG	6 cut(s)	29, 32, 116, 119, 323, 608
HpyAV	CCTTC	7 cut(s)	103, 280, 638, 700, 724, 802, 817
HpyCH4III	ACNGT	2 cut(s)	737, 886
HpyCH4IV	ACGT	5 cut(s)	27, 36, 147, 294, 321
HpyCH4V	TGCA	2 cut(s)	262, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 209, 492, 578
HpyF3I	CTNAG	1 cut(s)	686
HpySE526I	ACGT	5 cut(s)	27, 36, 147, 294, 321
Hsp92I	GRCGYC	4 cut(s)	27, 132, 147, 321
Hsp92II	CATG	1 cut(s)	631
HspAI	GCGC	1 cut(s)	495
KroI	GCCGGC	2 cut(s)	11, 670
KroNI	GCCGGC	2 cut(s)	13, 672
KspI	CCGCGG	1 cut(s)	678
Kzo9I	GATC	4 cut(s)	16, 137, 439, 682
LmnI	GCTCC	3 cut(s)	225, 314, 769
LweI	GCATC	1 cut(s)	192
MaeII	ACGT	5 cut(s)	27, 36, 147, 294, 321
MaeIII	GTNAC	3 cut(s)	148, 409, 546
MalI	GATC	4 cut(s)	18, 139, 441, 684
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	4 cut(s)	16, 137, 439, 682
MboII	GAAGA	8 cut(s)	31, 40, 178, 223, 343, 787, 790, 892
MflI	RGATCY	1 cut(s)	682
MluCI	AATT	1 cut(s)	901
MlyI	GAGTC	2 cut(s)	342, 380
MmeI	TCCRAC	2 cut(s)	48, 417
MreI	CGCCGGCG	1 cut(s)	11
MroNI	GCCGGC	2 cut(s)	11, 670
MseI	TTAA	2 cut(s)	741, 900
MslI	CAYNNNNRTG	2 cut(s)	521, 843
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	7 cut(s)	12, 129, 209, 361, 432, 552, 671
MspR9I	CCNGG	5 cut(s)	209, 361, 391, 433, 552
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	5 cut(s)	54, 422, 474, 497, 677
MwoI	GCNNNNNNNGC	4 cut(s)	51, 209, 492, 578
NaeI	GCCGGC	2 cut(s)	13, 672
NciI	CCSGG	4 cut(s)	209, 361, 433, 552
NdeII	GATC	4 cut(s)	16, 137, 439, 682
NgoMIV	GCCGGC	2 cut(s)	11, 670
NlaIII	CATG	1 cut(s)	631
NlaIV	GGNNCC	3 cut(s)	70, 430, 601
NmuCI	GTSAC	2 cut(s)	148, 409
OliI	CACNNNNGTG	1 cut(s)	521
PagI	TCATGA	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	5 cut(s)	33, 327, 419, 459, 600
PdiI	GCCGGC	2 cut(s)	13, 672
PfeI	GAWTC	1 cut(s)	574
PkrI	GCNGC	7 cut(s)	7, 10, 248, 251, 397, 676, 693
PleI	GAGTC	2 cut(s)	342, 380
PpsI	GAGTC	2 cut(s)	342, 380
PshBI	ATTAAT	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	546
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	70, 430, 601
PspPI	GGNCC	6 cut(s)	211, 363, 393, 600, 733, 826
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	2 cut(s)	344, 458
RsaNI	GTAC	2 cut(s)	343, 457
RseI	CAYNNNNRTG	2 cut(s)	521, 843
SacII	CCGCGG	1 cut(s)	678
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	741, 900
SatI	GCNGC	7 cut(s)	6, 9, 247, 250, 396, 675, 692
Sau3AI	GATC	4 cut(s)	16, 137, 439, 682
Sau96I	GGNCC	6 cut(s)	211, 363, 393, 600, 733, 826
SchI	GAGTC	2 cut(s)	342, 380
ScrFI	CCNGG	5 cut(s)	209, 361, 391, 433, 552
SfaNI	GCATC	1 cut(s)	192
Sfr303I	CCGCGG	1 cut(s)	678
SgrAI	CRCCGGYG	2 cut(s)	11, 128
SgrBI	CCGCGG	1 cut(s)	678
SgrDI	CGTCGACG	1 cut(s)	113
SinI	GGWCC	3 cut(s)	600, 733, 826
SmiMI	CAYNNNNRTG	2 cut(s)	521, 843
Sse9I	AATT	1 cut(s)	901
StyD4I	CCNGG	5 cut(s)	207, 359, 389, 431, 550
TaaI	ACNGT	2 cut(s)	737, 886
TaiI	ACGT	5 cut(s)	30, 39, 150, 297, 324
TaqI	TCGA	4 cut(s)	30, 96, 114, 339
TaqII	GACCGA	3 cut(s)	325, 529, 617
TasI	AATT	1 cut(s)	901
TauI	GCSGC	7 cut(s)	8, 11, 249, 252, 398, 677, 694
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	2 cut(s)	741, 900
Tru9I	TTAA	2 cut(s)	741, 900
TseFI	GTSAC	2 cut(s)	148, 409
Tsp45I	GTSAC	2 cut(s)	148, 409
TspDTI	ATGAA	8 cut(s)	469, 616, 644, 657, 821, 827, 886, 894
TspGWI	ACGGA	3 cut(s)	360, 441, 759
VpaK11BI	GGWCC	3 cut(s)	600, 733, 826
VspI	ATTAAT	1 cut(s)	900
XmiI	GTMKAC	1 cut(s)	114
ZraI	GACGTC	3 cut(s)	28, 148, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.