Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042261.1

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

39 .. 765

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042261.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 727 bp

tttcctacccaactccgtcgaccctacccggaagctccccctcctcctctacctccacggcggcggcttctgcttcgagtcaccctgctcctccacctaccacaactacgtctccaccgtcgccgcttccgccaacgtcatagccgtctcagtcgagtacggcctcttcccgacccggcccattcccgcttgctacgacgactcctgggccgccctacaatgggtcgcgacacatgctgacaaaaccgggtcggagccgtggataaacgactacgccgacttgacccgcgtcttcgtcggcggggatagcgctggagggaacatagcgcacactttgatgtcccgggtcgggtcactcgggttacccggaccgaaagtggtcggggcaatacttgtgcatccctactttggtgggactgatgatgataagatgtggctgtacatgaataaggagaatgaagggttgcaggataggaggctggtaccggccgcacaggatattcggcatcttgggtgtgagagggtgttggtgtttttggcggagatggaccatttgaaggctggcgggaagaggtatgtggaggagataaagaagagtgggtggagtgggagtgtggaggtggaggagactgtagggaaagaccattgctttcacttggccgaacccaaggatcagcagactaaggatttggtcaagaaaattgcttcttttattaatctacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

241

Amino Acids

26.5

Weight (kDa)

5.91

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	19
AccII	CGCG	2 cut(s)	228, 289
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	2 cut(s)	487, 658
AfaI	GTAC	3 cut(s)	159, 441, 484
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	5 cut(s)	220, 221, 349, 408, 557
AgsI	TTSAA	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw26I	GTCTC	3 cut(s)	116, 152, 621
AlwI	GGATC	1 cut(s)	679
Ama87I	CYCGRG	2 cut(s)	343, 357
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	5 cut(s)	161, 177, 208, 487, 658
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
AseI	ATTAAT	1 cut(s)	715
Asp718I	GGTACC	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	312, 329
AspS9I	GGNCC	4 cut(s)	178, 208, 369, 548
AsuC2I	CCSGG	6 cut(s)	29, 176, 248, 344, 345, 367
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	2 cut(s)	343, 357
AvaII	GGWCC	2 cut(s)	369, 548
BanI	GGYRCC	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BbsI	GAAGAC	1 cut(s)	284
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	4 cut(s)	74, 129, 176, 242
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	6 cut(s)	29, 176, 248, 344, 345, 367
BcoDI	GTCTC	3 cut(s)	116, 152, 621
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	1 cut(s)	631
BfoI	RGCGCY	1 cut(s)	313
BisI	GCNGC	5 cut(s)	62, 65, 124, 211, 490
BlsI	GCNGC	5 cut(s)	63, 66, 125, 212, 491
Bme1390I	CCNGG	7 cut(s)	29, 176, 206, 248, 344, 345, 367
Bme18I	GGWCC	2 cut(s)	369, 548
BmeT110I	CYCGRG	2 cut(s)	343, 357
BmgT120I	GGNCC	4 cut(s)	178, 208, 369, 548
BmiI	GGNNCC	2 cut(s)	256, 484
BmrFI	CCNGG	7 cut(s)	29, 176, 206, 248, 344, 345, 367
BmsI	GCATC	2 cut(s)	407, 515
BoxI	GACNNNNGTC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	334
BpuMI	CCSGG	6 cut(s)	29, 176, 248, 344, 345, 367
BsaJI	CCNNGG	5 cut(s)	56, 205, 258, 343, 667
BsaXI	ACNNNNNCTCC	6 cut(s)	96, 126, 186, 216, 596, 626
Bsc4I	CCNNNNNNNGG	5 cut(s)	220, 221, 349, 408, 557
Bse118I	RCCGGY	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	5 cut(s)	56, 205, 258, 343, 667
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	5 cut(s)	220, 221, 349, 408, 557
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	1 cut(s)	163
BseRI	GAGGAG	5 cut(s)	33, 36, 80, 597, 639
BseX3I	CGGCCG	1 cut(s)	487
Bsh1236I	CGCG	2 cut(s)	228, 289
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	5 cut(s)	163, 179, 210, 489, 660
BshNI	GGYRCC	1 cut(s)	482
BsiEI	CGRYCG	1 cut(s)	490
BsiHKCI	CYCGRG	2 cut(s)	343, 357
BsiSI	CCGG	6 cut(s)	29, 176, 247, 344, 367, 486
BslFI	GGGAC	2 cut(s)	326, 428
BslI	CCNNNNNNNGG	5 cut(s)	220, 221, 349, 408, 557
BsmAI	GTCTC	3 cut(s)	116, 152, 621
BsmBI	CGTCTC	2 cut(s)	116, 152
BsmFI	GGGAC	2 cut(s)	326, 428
BsnI	GGCC	5 cut(s)	163, 179, 210, 489, 660
BsoBI	CYCGRG	2 cut(s)	343, 357
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	671
Bsp68I	TCGCGA	1 cut(s)	228
BspANI	GGCC	5 cut(s)	163, 179, 210, 489, 660
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	228, 289
BspLI	GGNNCC	2 cut(s)	256, 484
BspPI	GGATC	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	485
BsrGI	TGTACA	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	5 cut(s)	56, 205, 258, 343, 667
BssMI	GATC	1 cut(s)	671
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	119, 632
Bst6I	CTCTTC	3 cut(s)	171, 564, 588
BstAUI	TGTACA	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	191, 563
BstDEI	CTNAG	2 cut(s)	149, 682
BstDSI	CCRYGG	2 cut(s)	56, 258
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	398
BstFNI	CGCG	2 cut(s)	228, 289
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	312, 329
BstKTI	GATC	1 cut(s)	674
BstMAI	GTCTC	3 cut(s)	116, 152, 621
BstMBI	GATC	1 cut(s)	671
BstMCI	CGRYCG	1 cut(s)	490
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 129, 234, 307
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	237
BstPAI	GACNNNNGTC	1 cut(s)	288
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	7 cut(s)	27, 174, 204, 246, 342, 343, 365
BstSFI	CTRYAG	1 cut(s)	631
BstUI	CGCG	2 cut(s)	228, 289
BstV2I	GAAGAC	1 cut(s)	284
BstZI	CGGCCG	1 cut(s)	487
BsuRI	GGCC	5 cut(s)	163, 179, 210, 489, 660
BtgI	CCRYGG	2 cut(s)	56, 258
BtsCI	GGATG	1 cut(s)	398
BtuMI	TCGCGA	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	191, 563
CfoI	GCGC	2 cut(s)	312, 329
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	4 cut(s)	178, 208, 369, 548
Cfr9I	CCCGGG	1 cut(s)	343
CpoI	CGGWCCG	1 cut(s)	369
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	158, 440, 483
CspI	CGGWCCG	1 cut(s)	369
CviAII	CATG	2 cut(s)	234, 443
CviQI	GTAC	3 cut(s)	158, 440, 483
DdeI	CTNAG	2 cut(s)	149, 682
DpnI	GATC	1 cut(s)	673
DpnII	GATC	1 cut(s)	671
EaeI	YGGCCR	2 cut(s)	487, 658
EagI	CGGCCG	1 cut(s)	487
Eam1104I	CTCTTC	3 cut(s)	171, 564, 588
EarI	CTCTTC	3 cut(s)	171, 564, 588
EciI	GGCGGA	2 cut(s)	119, 555
EclXI	CGGCCG	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	667
Eco47I	GGWCC	2 cut(s)	369, 548
Eco47III	AGCGCT	1 cut(s)	311
Eco52I	CGGCCG	1 cut(s)	487
Eco88I	CYCGRG	2 cut(s)	343, 357
Eco91I	GGTNACC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	667
Esp3I	CGTCTC	2 cut(s)	116, 152
FaeI	CATG	2 cut(s)	237, 446
FaiI	YATR	5 cut(s)	141, 235, 324, 444, 577
FaqI	GGGAC	2 cut(s)	326, 428
FatI	CATG	2 cut(s)	233, 442
FauI	CCCGC	4 cut(s)	194, 294, 294, 558
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	5 cut(s)	62, 65, 124, 211, 490
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	5 cut(s)	62, 65, 124, 211, 490
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	2 cut(s)	311, 328
GluI	GCNGC	5 cut(s)	62, 65, 124, 211, 490
GsuI	CTGGAG	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	5 cut(s)	163, 179, 210, 489, 660
HapII	CCGG	6 cut(s)	29, 176, 247, 344, 367, 486
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	312, 329
Hin1II	CATG	2 cut(s)	237, 446
Hin6I	GCGC	2 cut(s)	310, 327
HinP1I	GCGC	2 cut(s)	310, 327
HincII	GTYRAC	1 cut(s)	20
HindII	GTYRAC	1 cut(s)	20
HinfI	GANTC	2 cut(s)	78, 201
HpaII	CCGG	6 cut(s)	29, 176, 247, 344, 367, 486
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	3 cut(s)	170, 227, 695
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	4 cut(s)	21, 123, 201, 300
HpyAV	CCTTC	2 cut(s)	453, 551
HpyCH4III	ACNGT	2 cut(s)	119, 632
HpyCH4IV	ACGT	2 cut(s)	109, 136
HpyCH4V	TGCA	2 cut(s)	398, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 129, 234, 307
HpyF3I	CTNAG	2 cut(s)	149, 682
HpySE526I	ACGT	2 cut(s)	109, 136
Hsp92II	CATG	2 cut(s)	237, 446
HspAI	GCGC	2 cut(s)	310, 327
KpnI	GGTACC	1 cut(s)	486
Kzo9I	GATC	1 cut(s)	671
LmnI	GCTCC	3 cut(s)	40, 93, 254
LweI	GCATC	2 cut(s)	407, 515
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	2 cut(s)	109, 136
MaeIII	GTNAC	3 cut(s)	79, 352, 361
MalI	GATC	1 cut(s)	673
MboI	GATC	1 cut(s)	671
MboII	GAAGA	4 cut(s)	158, 284, 581, 605
MluCI	AATT	1 cut(s)	700
MlyI	GAGTC	2 cut(s)	87, 195
MmeI	TCCRAC	1 cut(s)	232
MseI	TTAA	1 cut(s)	715
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	6 cut(s)	29, 176, 247, 344, 367, 486
MspR9I	CCNGG	7 cut(s)	29, 176, 206, 248, 344, 345, 367
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	2 cut(s)	228, 289
MwoI	GCNNNNNNNGC	4 cut(s)	70, 129, 234, 307
NciI	CCSGG	6 cut(s)	29, 176, 248, 344, 345, 367
NdeII	GATC	1 cut(s)	671
NlaIII	CATG	2 cut(s)	237, 446
NlaIV	GGNNCC	2 cut(s)	256, 484
NmuCI	GTSAC	2 cut(s)	79, 352
NruI	TCGCGA	1 cut(s)	228
NspI	RCATGY	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	3 cut(s)	115, 142, 274
PkrI	GCNGC	5 cut(s)	63, 66, 125, 212, 491
PleI	GAGTC	2 cut(s)	86, 195
PpsI	GAGTC	2 cut(s)	86, 195
PshAI	GACNNNNGTC	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	715
Psp6I	CCWGG	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	256, 484
PspPI	GGNCC	4 cut(s)	178, 208, 369, 548
RruI	TCGCGA	1 cut(s)	228
RsaI	GTAC	3 cut(s)	159, 441, 484
RsaNI	GTAC	3 cut(s)	158, 440, 483
RseI	CAYNNNNRTG	1 cut(s)	336
Rsr2I	CGGWCCG	1 cut(s)	369
RsrII	CGGWCCG	1 cut(s)	369
SalI	GTCGAC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	715
SatI	GCNGC	5 cut(s)	62, 65, 124, 211, 490
Sau3AI	GATC	1 cut(s)	671
Sau96I	GGNCC	4 cut(s)	178, 208, 369, 548
SchI	GAGTC	2 cut(s)	87, 195
ScrFI	CCNGG	7 cut(s)	29, 176, 206, 248, 344, 345, 367
SetI	ASST	7 cut(s)	37, 55, 99, 112, 139, 576, 622
SfaNI	GCATC	2 cut(s)	407, 515
SfcI	CTRYAG	1 cut(s)	631
SinI	GGWCC	2 cut(s)	369, 548
SmaI	CCCGGG	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	1 cut(s)	700
SspMI	CTAG	1 cut(s)	725
StyD4I	CCNGG	7 cut(s)	27, 174, 204, 246, 342, 343, 365
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	2 cut(s)	119, 632
TaiI	ACGT	2 cut(s)	112, 139
TaqI	TCGA	3 cut(s)	19, 76, 154
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	1 cut(s)	700
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	5 cut(s)	64, 67, 126, 213, 492
Tru1I	TTAA	1 cut(s)	715
Tru9I	TTAA	1 cut(s)	715
TseFI	GTSAC	2 cut(s)	79, 352
Tsp45I	GTSAC	2 cut(s)	79, 352
TspDTI	ATGAA	2 cut(s)	459, 472
TspGWI	ACGGA	1 cut(s)	5
TspMI	CCCGGG	1 cut(s)	343
VpaK11BI	GGWCC	2 cut(s)	369, 548
VspI	ATTAAT	1 cut(s)	715
XceI	RCATGY	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XmaI	CCCGGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.