Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003936

Physical Location & Seq

Genomic Coordinates Reverse (-)

55128991 .. 55130393

Gene Structure 1403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCCGCTGCCGGCGATCACTCCGACGTCGAACACGTCTTCCGCTTCTTCCGCGTCCACAAAGACGGCACCATCCACCGAACCCATCAATCCTTCGACAAAATCCCAGCCGCCGACGACCTAACCACCGGCCTCCGCTCCAAAGACGTCACCATCTCCACCGACCCAGCAGTCTCCGCCCGCATCTTCGTCCCCAAATCCGCCGACCCGACCCGAAAACTCCCCCTCCTCTTCTACGTCCACGGCGGCGGCTTCTGCATGCAGTCCGCCTTCTCCTCCAGATACCACGGCTACGTCTCCACCATCTGCTCTTCCGCCGACGTCATCGCCGTCTCGGTCGAGTACGGACTCTTCCCGACCCGGCCCATACCCGCTTGCTACGAGGACTCCTGGGCCGCTCTCCAATGGGTCGCGGCTCACGCGAACGGAACCGGGTCGGATCAATGGCTAAACGAGTACGCCGACTTGAACCGCATGTTCATCGGCGGGGAAAGCGCGGGAGGGAACATAACACACACTCTGGTGTCCCGGGTCGGATCGGTCGGGTTACCCGGAGTAAAAGTGGTGGGGGCGATTCTATCGCATCCCTACTTCGGCGGGACCGATGATGATAAGATGTGGCTTTACATGAACAAGGAGAATGAAGGGTTGCAGGATAGGAGGCTGAAGCCGGCCGCGGAGGATCTGAGACGGCTCGGGTGTGAGAAGGTGTTGGTGTTTGTGGCGGAGAAGGATCATTTGAACGGAGTGGGGAAGAGCTATGTGGAGGAGCTGAAGAAGAGTGGGTGGAAAGGGAGTGTGGAGATGAAGGAGAATAAAGGGAAGGACCATTGCTTTCATCTGCATGACACAAAGGATGAGCAGGCTGTGGATTTGCTGAAGACAGTGTGTTCTTTCATTAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

302

Amino Acids

33.28

Weight (kDa)

6.39

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	62 - 171	7e-10	BD-FAE
COesterase	PF00135	62 - 177	3.9e-08	Carboxylesterase family
Abhydrolase_3	PF07859	77 - 280	2.1e-37	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06530
rosa_chinensis	RchiOBHm_Chr6g0258381 RchiOBHm_Chr6g0258411 RchiOBHm_Chr6g0258441
rosa_laevigata	RLG00000014612 RLG00000014613 RLG00000014614 RLG00000014616
rosa_multiflora	Rmu_co8313269.1_g000001 Rmu_sc0004926.1_g000002 Rmu_sc0004926.1_g000009 Rmu_sc0008229.1_g000002 Rmu_sc0008229.1_g000003 Rmu_sc0008229.1_g000007 Rmu_sc0008229.1_g000009 Rmu_sc0011875.1_g000008 Rmu_sc0042261.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437400 Rroxscaffold_178G00437420 Rroxscaffold_178G00437440 Rroxscaffold_7G00205570 Rroxscaffold_7G00205590 Rroxscaffold_7G00205610 Rroxscaffold_7G00205700
rosa_rugosa	Rorug05G0581500 Rorug05G0581600
rosa_samantha	Rh6CG086200 Rh6CG086300 Rh6CG086400 Rh6CG086500 Rh6CG086600
rosa_wichuraiana	Rw6G008480 Rw6G008490 Rw6G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	3 cut(s)	30, 150, 324
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	2 cut(s)	138, 398
AccII	CGCG	5 cut(s)	54, 413, 422, 497, 677
AclWI	GGATC	4 cut(s)	447, 544, 690, 741
AcoI	YGGCCR	2 cut(s)	3, 672
AcuI	CTGAAG	3 cut(s)	686, 794, 899
AcyI	GRCGYC	3 cut(s)	27, 147, 321
AfaI	GTAC	2 cut(s)	344, 458
AfiI	CCNNNNNNNGG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	469, 742
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	389
AleI	CACNNNNGTG	1 cut(s)	521
AloI	GAACNNNNNNTCC	2 cut(s)	24, 56
AluBI	AGCT	2 cut(s)	759, 772
AluI	AGCT	2 cut(s)	759, 772
Alw26I	GTCTC	4 cut(s)	178, 301, 337, 682
AlwI	GGATC	4 cut(s)	447, 544, 690, 741
Ama87I	CYCGRG	2 cut(s)	528, 695
AoxI	GGCC	5 cut(s)	3, 130, 362, 393, 672
ApeKI	GCWGC	1 cut(s)	8
AseI	ATTAAT	1 cut(s)	900
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	4 cut(s)	363, 393, 600, 826
AsuC2I	CCSGG	5 cut(s)	361, 433, 529, 530, 552
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	2 cut(s)	528, 695
AvaII	GGWCC	2 cut(s)	600, 826
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BbsI	GAAGAC	2 cut(s)	31, 887
BccI	CCATC	4 cut(s)	80, 93, 161, 311
BceAI	ACGGC	5 cut(s)	82, 259, 304, 314, 707
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciT130I	CCWGG	1 cut(s)	391
BcnI	CCSGG	5 cut(s)	361, 433, 529, 530, 552
BcoDI	GTCTC	4 cut(s)	178, 301, 337, 682
BisI	GCNGC	8 cut(s)	6, 9, 111, 247, 250, 396, 414, 675
BlsI	GCNGC	8 cut(s)	7, 10, 112, 248, 251, 397, 415, 676
Bme1390I	CCNGG	6 cut(s)	361, 391, 433, 529, 530, 552
Bme18I	GGWCC	2 cut(s)	600, 826
BmeT110I	CYCGRG	2 cut(s)	528, 695
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	4 cut(s)	363, 393, 600, 826
BmiI	GGNNCC	3 cut(s)	70, 430, 601
BmrFI	CCNGG	6 cut(s)	361, 391, 433, 529, 530, 552
BmsI	GCATC	2 cut(s)	192, 592
BpiI	GAAGAC	2 cut(s)	31, 887
BpmI	CTGGAG	1 cut(s)	262
BpuMI	CCSGG	5 cut(s)	361, 433, 529, 530, 552
BsaHI	GRCGYC	3 cut(s)	27, 147, 321
BsaJI	CCNNGG	5 cut(s)	241, 286, 390, 528, 675
BsaXI	ACNNNNNCTCC	6 cut(s)	210, 240, 371, 401, 546, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse118I	RCCGGY	3 cut(s)	11, 128, 670
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	5 cut(s)	241, 286, 390, 528, 675
BseGI	GGATG	3 cut(s)	72, 583, 862
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	1 cut(s)	677
BseRI	GAGGAG	3 cut(s)	218, 265, 782
BseX3I	CGGCCG	1 cut(s)	672
BseYI	CCCAGC	2 cut(s)	106, 166
Bsh1236I	CGCG	5 cut(s)	54, 413, 422, 497, 677
Bsh1285I	CGRYCG	3 cut(s)	339, 543, 675
BshFI	GGCC	5 cut(s)	5, 132, 364, 395, 674
BshNI	GGYRCC	1 cut(s)	68
BsiEI	CGRYCG	3 cut(s)	339, 543, 675
BsiHKCI	CYCGRG	2 cut(s)	528, 695
BsiSI	CCGG	7 cut(s)	12, 129, 361, 432, 529, 552, 671
BslFI	GGGAC	3 cut(s)	176, 511, 613
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	4 cut(s)	178, 301, 337, 682
BsmBI	CGTCTC	3 cut(s)	301, 337, 682
BsmFI	GGGAC	3 cut(s)	176, 511, 613
BsnI	GGCC	5 cut(s)	5, 132, 364, 395, 674
BsoBI	CYCGRG	2 cut(s)	528, 695
Bsp143I	GATC	5 cut(s)	16, 439, 536, 682, 733
BspANI	GGCC	5 cut(s)	5, 132, 364, 395, 674
BspCNI	CTCAG	1 cut(s)	678
BspFNI	CGCG	5 cut(s)	54, 413, 422, 497, 677
BspLI	GGNNCC	3 cut(s)	70, 430, 601
BspPI	GGATC	4 cut(s)	447, 544, 690, 741
BspQI	GCTCTTC	2 cut(s)	316, 749
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	2 cut(s)	138, 398
BsrDI	GCAATG	1 cut(s)	829
BsrFI	RCCGGY	3 cut(s)	11, 128, 670
BssAI	RCCGGY	3 cut(s)	11, 128, 670
BssECI	CCNNGG	5 cut(s)	241, 286, 390, 528, 675
BssMI	GATC	5 cut(s)	16, 439, 536, 682, 733
BssNI	GRCGYC	3 cut(s)	27, 147, 321
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	886
Bst6I	CTCTTC	5 cut(s)	236, 316, 356, 749, 773
BstACI	GRCGYC	3 cut(s)	27, 147, 321
BstC8I	GCNNGC	6 cut(s)	13, 181, 260, 376, 672, 864
BstDEI	CTNAG	1 cut(s)	686
BstDSI	CCRYGG	3 cut(s)	241, 286, 675
BstEII	GGTNACC	1 cut(s)	546
BstF5I	GGATG	3 cut(s)	72, 583, 862
BstFNI	CGCG	5 cut(s)	54, 413, 422, 497, 677
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	5 cut(s)	19, 442, 539, 685, 736
BstMAI	GTCTC	4 cut(s)	178, 301, 337, 682
BstMBI	GATC	5 cut(s)	16, 439, 536, 682, 733
BstMCI	CGRYCG	3 cut(s)	339, 543, 675
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 176, 255, 419, 492
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	2 cut(s)	262, 478
BstPI	GGTNACC	1 cut(s)	546
BstSCI	CCNGG	6 cut(s)	359, 389, 431, 527, 528, 550
BstUI	CGCG	5 cut(s)	54, 413, 422, 497, 677
BstV2I	GAAGAC	2 cut(s)	31, 887
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BstZI	CGGCCG	1 cut(s)	672
BsuRI	GGCC	5 cut(s)	5, 132, 364, 395, 674
BtgI	CCRYGG	3 cut(s)	241, 286, 675
BtgZI	GCGATG	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	3 cut(s)	72, 583, 862
BtsIMutI	CAGTG	1 cut(s)	891
Cac8I	GCNNGC	6 cut(s)	13, 181, 260, 376, 672, 864
CfoI	GCGC	1 cut(s)	497
Cfr10I	RCCGGY	3 cut(s)	11, 128, 670
Cfr13I	GGNCC	4 cut(s)	363, 393, 600, 826
Cfr42I	CCGCGG	1 cut(s)	678
Cfr9I	CCCGGG	1 cut(s)	528
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	343, 457
CviAII	CATG	4 cut(s)	259, 475, 628, 845
CviQI	GTAC	2 cut(s)	343, 457
DdeI	CTNAG	1 cut(s)	686
DpnI	GATC	5 cut(s)	18, 441, 538, 684, 735
DpnII	GATC	5 cut(s)	16, 439, 536, 682, 733
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	2 cut(s)	3, 672
EagI	CGGCCG	1 cut(s)	672
Eam1104I	CTCTTC	5 cut(s)	236, 316, 356, 749, 773
EarI	CTCTTC	5 cut(s)	236, 316, 356, 749, 773
EciI	GGCGGA	5 cut(s)	166, 190, 256, 304, 740
EclXI	CGGCCG	1 cut(s)	672
Eco47I	GGWCC	2 cut(s)	600, 826
Eco52I	CGGCCG	1 cut(s)	672
Eco57I	CTGAAG	3 cut(s)	686, 794, 899
Eco88I	CYCGRG	2 cut(s)	528, 695
Eco91I	GGTNACC	1 cut(s)	546
EcoO65I	GGTNACC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	389
Esp3I	CGTCTC	3 cut(s)	301, 337, 682
FaeI	CATG	4 cut(s)	262, 478, 631, 848
FaiI	YATR	8 cut(s)	260, 368, 476, 509, 629, 762, 846, 907
FaqI	GGGAC	3 cut(s)	176, 511, 613
FatI	CATG	4 cut(s)	258, 474, 627, 844
FauI	CCCGC	5 cut(s)	188, 379, 479, 490, 590
Fnu4HI	GCNGC	8 cut(s)	6, 9, 111, 247, 250, 396, 414, 675
FokI	GGATG	3 cut(s)	59, 570, 869
Fsp4HI	GCNGC	8 cut(s)	6, 9, 111, 247, 250, 396, 414, 675
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	8 cut(s)	6, 9, 111, 247, 250, 396, 414, 675
GsaI	CCCAGC	2 cut(s)	110, 170
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	5 cut(s)	5, 132, 364, 395, 674
HapII	CCGG	7 cut(s)	12, 129, 361, 432, 529, 552, 671
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	497
Hin1I	GRCGYC	3 cut(s)	27, 147, 321
Hin1II	CATG	4 cut(s)	262, 478, 631, 848
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HinfI	GANTC	3 cut(s)	348, 386, 574
HpaII	CCGG	7 cut(s)	12, 129, 361, 432, 529, 552, 671
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	58, 241
Hpy188I	TCNGA	4 cut(s)	25, 439, 536, 687
Hpy188III	TCNNGA	2 cut(s)	279, 355
Hpy8I	GTNNAC	2 cut(s)	58, 241
Hpy99I	CGWCG	4 cut(s)	29, 32, 119, 323
HpyAV	CCTTC	7 cut(s)	103, 280, 638, 700, 724, 802, 817
HpyCH4III	ACNGT	1 cut(s)	886
HpyCH4IV	ACGT	6 cut(s)	27, 36, 147, 237, 294, 321
HpyCH4V	TGCA	4 cut(s)	258, 262, 652, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 176, 255, 419, 492
HpyF3I	CTNAG	1 cut(s)	686
HpySE526I	ACGT	6 cut(s)	27, 36, 147, 237, 294, 321
Hsp92I	GRCGYC	3 cut(s)	27, 147, 321
Hsp92II	CATG	4 cut(s)	262, 478, 631, 848
HspAI	GCGC	1 cut(s)	495
KroI	GCCGGC	2 cut(s)	11, 670
KroNI	GCCGGC	2 cut(s)	13, 672
KspI	CCGCGG	1 cut(s)	678
Kzo9I	GATC	5 cut(s)	16, 439, 536, 682, 733
LguI	GCTCTTC	2 cut(s)	316, 749
LmnI	GCTCC	2 cut(s)	143, 769
LweI	GCATC	2 cut(s)	192, 592
MaeII	ACGT	6 cut(s)	27, 36, 147, 237, 294, 321
MaeIII	GTNAC	2 cut(s)	148, 546
MalI	GATC	5 cut(s)	18, 441, 538, 684, 735
MbiI	CCGCTC	2 cut(s)	138, 398
MboI	GATC	5 cut(s)	16, 439, 536, 682, 733
MflI	RGATCY	1 cut(s)	682
MluCI	AATT	1 cut(s)	901
MlyI	GAGTC	2 cut(s)	342, 380
MmeI	TCCRAC	3 cut(s)	48, 417, 514
MnlI	CCTC	9 cut(s)	143, 236, 239, 286, 376, 494, 654, 673, 760
MroNI	GCCGGC	2 cut(s)	11, 670
MseI	TTAA	1 cut(s)	900
MslI	CAYNNNNRTG	2 cut(s)	521, 843
MspA1I	CMGCKG	2 cut(s)	8, 677
MspI	CCGG	7 cut(s)	12, 129, 361, 432, 529, 552, 671
MspR9I	CCNGG	6 cut(s)	361, 391, 433, 529, 530, 552
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	5 cut(s)	54, 413, 422, 497, 677
MwoI	GCNNNNNNNGC	5 cut(s)	51, 176, 255, 419, 492
NaeI	GCCGGC	2 cut(s)	13, 672
NciI	CCSGG	5 cut(s)	361, 433, 529, 530, 552
NdeII	GATC	5 cut(s)	16, 439, 536, 682, 733
NgoMIV	GCCGGC	2 cut(s)	11, 670
NlaIII	CATG	4 cut(s)	262, 478, 631, 848
NlaIV	GGNNCC	3 cut(s)	70, 430, 601
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	2 cut(s)	262, 478
OliI	CACNNNNGTG	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	262
PciSI	GCTCTTC	2 cut(s)	316, 749
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 327, 459, 600
PdiI	GCCGGC	2 cut(s)	13, 672
PfeI	GAWTC	1 cut(s)	574
PkrI	GCNGC	8 cut(s)	7, 10, 112, 248, 251, 397, 415, 676
PleI	GAGTC	2 cut(s)	342, 380
PpsI	GAGTC	2 cut(s)	342, 380
PshBI	ATTAAT	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	546
PspFI	CCCAGC	2 cut(s)	106, 166
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	70, 430, 601
PspPI	GGNCC	4 cut(s)	363, 393, 600, 826
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	2 cut(s)	344, 458
RsaNI	GTAC	2 cut(s)	343, 457
RseI	CAYNNNNRTG	2 cut(s)	521, 843
SacII	CCGCGG	1 cut(s)	678
SapI	GCTCTTC	2 cut(s)	316, 749
SaqAI	TTAA	1 cut(s)	900
SatI	GCNGC	8 cut(s)	6, 9, 111, 247, 250, 396, 414, 675
Sau3AI	GATC	5 cut(s)	16, 439, 536, 682, 733
Sau96I	GGNCC	4 cut(s)	363, 393, 600, 826
SchI	GAGTC	2 cut(s)	342, 380
ScrFI	CCNGG	6 cut(s)	361, 391, 433, 529, 530, 552
SfaNI	GCATC	2 cut(s)	192, 592
Sfr303I	CCGCGG	1 cut(s)	678
SgrBI	CCGCGG	1 cut(s)	678
SinI	GGWCC	2 cut(s)	600, 826
SmaI	CCCGGG	1 cut(s)	530
SmiMI	CAYNNNNRTG	2 cut(s)	521, 843
SphI	GCATGC	1 cut(s)	262
Sse9I	AATT	1 cut(s)	901
StyD4I	CCNGG	6 cut(s)	359, 389, 431, 527, 528, 550
TaaI	ACNGT	1 cut(s)	886
TaiI	ACGT	6 cut(s)	30, 39, 150, 240, 297, 324
TaqI	TCGA	3 cut(s)	30, 96, 339
TaqII	GACCGA	3 cut(s)	325, 529, 617
TasI	AATT	1 cut(s)	901
TauI	GCSGC	7 cut(s)	8, 113, 249, 252, 398, 416, 677
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	1 cut(s)	900
Tru9I	TTAA	1 cut(s)	900
TscAI	CASTG	1 cut(s)	891
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	7 cut(s)	469, 644, 657, 821, 827, 886, 894
TspGWI	ACGGA	3 cut(s)	360, 441, 759
TspMI	CCCGGG	1 cut(s)	528
TspRI	CASTG	1 cut(s)	891
VpaK11BI	GGWCC	2 cut(s)	600, 826
VspI	ATTAAT	1 cut(s)	900
XceI	RCATGY	2 cut(s)	262, 478
XmaI	CCCGGG	1 cut(s)	528
ZraI	GACGTC	3 cut(s)	28, 148, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.