Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000777

Physical Location & Seq

Genomic Coordinates Forward (+)

6142198 .. 6144127

Gene Structure 1930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07423.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGCCTCCCGGCTCCTTCATCGCTTCCAACCCTAGAGTCATTACCGTCCTCGACGCTGTGAGCTTCCCCATTCTCTTTGACAACTCCAAAGTCGAAAAACGCAACGTTTTGGACGGTACCTACATGCCCTCCACATCCTTCACCGGCGGCTACCGCGTCTGCGCCTATCTCGATCCCTCGGAACCAAACCACGCTACTCTAAAGCGCTTCTTCTTATCTCTACTCGCCAGTCGCCACCACAAGTTCATCCCACTCTTCCAAACTCACCTCTCCGACCTCTTTCTCAATCTCGAAGCTCAAATTTCCAAAAATGGCAAAGCAGACTTCAACACCCCGAGCGATGACATGTCGTTTAAGTTCGTCTTCTCGCTGTTCTGCGGGTCGGAAAATACTTCATTGGGTTCCAAAGGGCCGAACTTGGTGGCTGCATGGCTCGCACCGCAACTGGCTCCGCAGATCACACTCGGGTCGCCAAAGTTGCTGAGCTTTGCTGAAGATTTCTTACTGCACACGTTTCCCTACCCTACCTTTCTCGTCAAATCAACCTACAAGAAGCTCTACGATGCGTTTCACGAGTCGTCGTCTTCGGTTTTGGAGGACGCCGAGAACAAATTTGGGATTCCGAGAGACGAAGCTTGCCACAATCTTGTGTTTTTGGCTTGCTTCAATGCTTTTGGTGGCATGAAGCTTTTGTTCCCTACTTTGATCAAGTGGGTTGGATCTGCAGGAGAGGACTTGCACCGCCGGCTCCGAGATGAAATCAGGGACGTGGTTAAGGAAAGCAACGGGAATGTAACTTTCTCGGCGTTGGAGAAGATGACTCTGACCAAGTCCGTGGTTTATGAAGCTATGAGGATCGAGCCTCCGGTGCCGTTCCAGTACGGGAAGGCCAAGGAGGATATAGTGATCCATAGCCATGATGCAGCATTTGAGATCAAGAAGGGGGAAATGATCTTTGGATATCAACCATTTGCCACAAAGGATCCGAAGATCTTTAAGAATCCAGAGGACTTTGTAGGGGACAGGTTTTTAGGAGAGGGTGAGAAATTGTTGAAGTATGTTTATTGGTCGAATGGTCGTGAGACGGATGATACTACGGTGGAGAACAAGCAGTGCGCCGGGAAGGACTTGGTGTTACTCTTGTCTAGGTTAATGTTGGTTGAGTTTTTCCTTCGGTATGACACTTGTGCTGTTGATGTGACTACGATTTCGTTGGGTACATCAGTGAAGTTCAAATCACTGACCAAAGCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

419

Amino Acids

46.89

Weight (kDa)

6.57

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	246 - 355	2.1e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07410 FvH4_2g07421 FvH4_2g07423 FvH4_5g16260
malus_domestica	MD10G1085800.v1.1
prunus_persica	Prupe.8G110100_v2.0.a1
pyrus_communis	pycom10g03730 pycom10g06740
rosa_chinensis	RchiOBHm_Chr6g0260901 RchiOBHm_Chr6g0260921 RchiOBHm_Chr6g0260931 RchiOBHm_Chr6g0260961 RchiOBHm_Chr6g0261011
rosa_laevigata	RLG00000014467 RLG00000014470 RLG00000014471 RLG00000014473 RLG00000014475 RLG00000014476 RLG00000014477 RLG00000014478 RLG00000018641 RLG00000022453
rosa_multiflora	Rmu_sc0003025.1_g000005 Rmu_sc0003337.1_g000004 Rmu_sc0003337.1_g000028 Rmu_sc0005816.1_g000002 Rmu_sc0005816.1_g000003 Rmu_sc0005816.1_g000011 Rmu_sc0005816.1_g000029 Rmu_sc0005980.1_g000002 Rmu_sc0009186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00122160 Rroxscaffold_7G00207490 Rroxscaffold_7G00207500 Rroxscaffold_7G00207550 Rroxscaffold_7G00207560 Rroxscaffold_7G00207620
rosa_rugosa	Rorug02G0235500.1 Rorug05G0593300 Rorug05G0593300 Rorug05G0593400 Rorug05G0593500.1 Rorug05G0594400
rosa_samantha	Rh6AG112800 Rh6AG113000 Rh6AG113100 Rh6AG113300 Rh6AG113900 Rh6BG106900 Rh6BG107000 Rh6BG107200 Rh6BG107500 Rh6CG103900 Rh6CG104000 Rh6CG104300 Rh6CG104400 Rh6CG104600 Rh6DG094800 Rh6DG094900 Rh6DG095100 Rh6DG095200 Rh6DG095400
rosa_wichuraiana	Rw0G011910 Rw6G009600 Rw6G009610 Rw6G009620 Rw6G009630 Rw6G009670 Rw6G009710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	2 cut(s)	116, 868
AccII	CGCG	1 cut(s)	156
AciI	CCGC	6 cut(s)	147, 154, 378, 440, 452, 742
AclI	AACGTT	1 cut(s)	105
AclWI	GGATC	6 cut(s)	167, 727, 863, 901, 977, 990
AcsI	RAATTY	2 cut(s)	300, 611
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	3 cut(s)	118, 881, 1219
AfeI	AGCGCT	1 cut(s)	206
AflIII	ACRYGT	2 cut(s)	345, 510
AgsI	TTSAA	4 cut(s)	328, 667, 1054, 1234
AjiI	CACGTC	1 cut(s)	769
AjuI	GAANNNNNNNTTGG	2 cut(s)	939, 971
AluBI	AGCT	7 cut(s)	63, 296, 486, 556, 635, 688, 848
AluI	AGCT	7 cut(s)	63, 296, 486, 556, 635, 688, 848
Alw26I	GTCTC	2 cut(s)	621, 1076
AlwI	GGATC	6 cut(s)	167, 727, 863, 901, 977, 990
Ama87I	CYCGRG	2 cut(s)	334, 464
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	2 cut(s)	410, 888
ApeKI	GCWGC	2 cut(s)	425, 923
ApoI	RAATTY	2 cut(s)	300, 611
ArsI	GACNNNNNNTTYG	2 cut(s)	1192, 1224
Asp718I	GGTACC	1 cut(s)	116
AspLEI	GCGC	3 cut(s)	164, 207, 1118
AspS9I	GGNCC	1 cut(s)	410
AsuC2I	CCSGG	2 cut(s)	9, 1120
AsuHPI	GGTGA	3 cut(s)	133, 257, 1052
AvaI	CYCGRG	2 cut(s)	334, 464
BaeI	ACNNNNGTAYC	4 cut(s)	1083, 1116, 1209, 1242
BamHI	GGATCC	1 cut(s)	982
BanI	GGYRCC	2 cut(s)	116, 868
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
BauI	CACGAG	1 cut(s)	572
BbsI	GAAGAC	2 cut(s)	355, 576
BbvI	GCAGC	2 cut(s)	412, 935
BceAI	ACGGC	1 cut(s)	856
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	2 cut(s)	9, 1120
BcoDI	GTCTC	2 cut(s)	621, 1076
BfaI	CTAG	2 cut(s)	33, 1146
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	1 cut(s)	208
BglII	AGATCT	1 cut(s)	990
BisI	GCNGC	3 cut(s)	148, 426, 924
BlpI	GCTNAGC	1 cut(s)	482
BlsI	GCNGC	3 cut(s)	149, 427, 925
Bme1390I	CCNGG	2 cut(s)	9, 1120
BmeT110I	CYCGRG	2 cut(s)	334, 464
BmgBI	CACGTC	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	8 cut(s)	13, 118, 183, 403, 450, 749, 870, 984
BmrFI	CCNGG	2 cut(s)	9, 1120
BmsI	GCATC	2 cut(s)	553, 910
BpiI	GAAGAC	2 cut(s)	355, 576
Bpu1102I	GCTNAGC	1 cut(s)	482
BpuMI	CCSGG	2 cut(s)	9, 1120
BsaHI	GRCGYC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	177, 834, 891
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse118I	RCCGGY	2 cut(s)	143, 744
Bse1I	ACTGG	3 cut(s)	228, 450, 877
BseDI	CCNNGG	3 cut(s)	177, 834, 891
BseGI	GGATG	3 cut(s)	134, 246, 1093
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	3 cut(s)	228, 450, 877
BseXI	GCAGC	2 cut(s)	412, 935
BsgI	GTGCAG	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	412, 890
BshNI	GGYRCC	2 cut(s)	116, 868
BsiHKCI	CYCGRG	2 cut(s)	334, 464
BsiSI	CCGG	5 cut(s)	9, 144, 745, 866, 1119
BslFI	GGGAC	2 cut(s)	779, 1034
BsmAI	GTCTC	2 cut(s)	621, 1076
BsmBI	CGTCTC	2 cut(s)	621, 1076
BsmFI	GGGAC	2 cut(s)	779, 1034
BsnI	GGCC	2 cut(s)	412, 890
BsoBI	CYCGRG	2 cut(s)	334, 464
Bsp1720I	GCTNAGC	1 cut(s)	482
BspACI	CCGC	6 cut(s)	147, 154, 378, 440, 452, 742
BspANI	GGCC	2 cut(s)	412, 890
BspCNI	CTCAG	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	8 cut(s)	13, 118, 183, 403, 450, 749, 870, 984
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	6 cut(s)	167, 727, 863, 901, 977, 990
BspT107I	GGYRCC	2 cut(s)	116, 868
BsrFI	RCCGGY	2 cut(s)	143, 744
BsrI	ACTGG	3 cut(s)	228, 450, 877
BssAI	RCCGGY	2 cut(s)	143, 744
BssECI	CCNNGG	3 cut(s)	177, 834, 891
BssNI	GRCGYC	1 cut(s)	600
BssSI	CACGAG	1 cut(s)	572
BssT1I	CCWWGG	1 cut(s)	891
Bst2BI	CACGAG	1 cut(s)	572
Bst4CI	ACNGT	3 cut(s)	46, 116, 1099
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	600
BstC8I	GCNNGC	4 cut(s)	435, 637, 661, 746
BstDEI	CTNAG	1 cut(s)	482
BstDSI	CCRYGG	1 cut(s)	834
BstF5I	GGATG	3 cut(s)	134, 246, 1093
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	3 cut(s)	164, 207, 1118
BstMAI	GTCTC	2 cut(s)	621, 1076
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 434, 439, 478, 745, 868
BstNSI	RCATGY	2 cut(s)	127, 349
BstSCI	CCNGG	2 cut(s)	7, 1118
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	412, 935
BstV2I	GAAGAC	2 cut(s)	355, 576
BstX2I	RGATCY	3 cut(s)	719, 982, 990
BstXI	CCANNNNNNTGG	1 cut(s)	835
BstYI	RGATCY	3 cut(s)	719, 982, 990
BsuRI	GGCC	2 cut(s)	412, 890
BtgI	CCRYGG	1 cut(s)	834
BtgZI	GCGATG	2 cut(s)	4, 354
BtrI	CACGTC	1 cut(s)	769
BtsCI	GGATG	3 cut(s)	134, 246, 1093
BtsI	GCAGTG	1 cut(s)	1118
BtsIMutI	CAGTG	3 cut(s)	1118, 1230, 1238
Cac8I	GCNNGC	4 cut(s)	435, 637, 661, 746
CfoI	GCGC	3 cut(s)	164, 207, 1118
Cfr10I	RCCGGY	2 cut(s)	143, 744
Cfr13I	GGNCC	1 cut(s)	410
CseI	GACGC	3 cut(s)	62, 145, 608
Csp6I	GTAC	3 cut(s)	117, 880, 1218
CviAII	CATG	5 cut(s)	124, 346, 429, 682, 917
CviQI	GTAC	3 cut(s)	117, 880, 1218
DdeI	CTNAG	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	891
Eco32I	GATATC	1 cut(s)	962
Eco47III	AGCGCT	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	513
Eco88I	CYCGRG	2 cut(s)	334, 464
EcoRV	GATATC	1 cut(s)	962
EcoT14I	CCWWGG	1 cut(s)	891
ErhI	CCWWGG	1 cut(s)	891
Esp3I	CGTCTC	2 cut(s)	621, 1076
FaeI	CATG	5 cut(s)	127, 349, 432, 685, 920
FalI	AAGNNNNNCTT	4 cut(s)	194, 226, 347, 379
FaqI	GGGAC	2 cut(s)	779, 1034
FatI	CATG	5 cut(s)	123, 345, 428, 681, 916
FauI	CCCGC	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	3 cut(s)	148, 426, 924
FokI	GGATG	3 cut(s)	121, 233, 1100
Fsp4HI	GCNGC	3 cut(s)	148, 426, 924
FspBI	CTAG	2 cut(s)	33, 1146
GlaI	GCGC	3 cut(s)	163, 206, 1117
GluI	GCNGC	3 cut(s)	148, 426, 924
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	412, 890
HapII	CCGG	5 cut(s)	9, 144, 745, 866, 1119
HgaI	GACGC	3 cut(s)	62, 145, 608
HhaI	GCGC	3 cut(s)	164, 207, 1118
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	5 cut(s)	127, 349, 432, 685, 920
Hin6I	GCGC	3 cut(s)	162, 205, 1116
HinP1I	GCGC	3 cut(s)	162, 205, 1116
HindIII	AAGCTT	2 cut(s)	633, 686
HinfI	GANTC	5 cut(s)	36, 575, 619, 820, 1000
HpaII	CCGG	5 cut(s)	9, 144, 745, 866, 1119
HphI	GGTGA	3 cut(s)	133, 257, 1052
Hpy188I	TCNGA	7 cut(s)	181, 274, 385, 624, 752, 825, 987
Hpy188III	TCNNGA	7 cut(s)	170, 290, 572, 937, 1004, 1079, 1254
Hpy99I	CGWCG	2 cut(s)	56, 583
HpyAV	CCTTC	6 cut(s)	25, 148, 880, 934, 1117, 1181
HpyCH4III	ACNGT	3 cut(s)	46, 116, 1099
HpyCH4IV	ACGT	3 cut(s)	105, 512, 768
HpyCH4V	TGCA	5 cut(s)	428, 508, 725, 739, 923
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 434, 439, 478, 745, 868
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	3 cut(s)	105, 512, 768
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	5 cut(s)	127, 349, 432, 685, 920
HspAI	GCGC	3 cut(s)	162, 205, 1116
KpnI	GGTACC	1 cut(s)	120
KroI	GCCGGC	1 cut(s)	744
KroNI	GCCGGC	1 cut(s)	746
Ksp22I	TGATCA	1 cut(s)	705
LmnI	GCTCC	3 cut(s)	17, 454, 753
Lsp1109I	GCAGC	2 cut(s)	412, 935
LweI	GCATC	2 cut(s)	553, 910
MaeI	CTAG	2 cut(s)	33, 1146
MaeII	ACGT	3 cut(s)	105, 512, 768
MaeIII	GTNAC	3 cut(s)	793, 1134, 1198
MboII	GAAGA	7 cut(s)	202, 247, 355, 506, 576, 826, 1000
MflI	RGATCY	3 cut(s)	719, 982, 990
MluCI	AATT	3 cut(s)	300, 611, 1046
MlyI	GAGTC	3 cut(s)	45, 584, 814
MmeI	TCCRAC	5 cut(s)	51, 297, 363, 697, 789
MroNI	GCCGGC	1 cut(s)	744
MseI	TTAA	4 cut(s)	354, 774, 996, 1151
MslI	CAYNNNNRTG	1 cut(s)	915
MspI	CCGG	5 cut(s)	9, 144, 745, 866, 1119
MspR9I	CCNGG	2 cut(s)	9, 1120
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	6 cut(s)	153, 434, 439, 478, 745, 868
NaeI	GCCGGC	1 cut(s)	746
NciI	CCSGG	2 cut(s)	9, 1120
NgoMIV	GCCGGC	1 cut(s)	744
NlaIII	CATG	5 cut(s)	127, 349, 432, 685, 920
NlaIV	GGNNCC	8 cut(s)	13, 118, 183, 403, 450, 749, 870, 984
NmeAIII	GCCGAG	2 cut(s)	628, 782
NmuCI	GTSAC	1 cut(s)	1198
NspI	RCATGY	2 cut(s)	127, 349
PciI	ACATGT	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	746
PfeI	GAWTC	2 cut(s)	619, 1000
PflFI	GACNNNGTC	1 cut(s)	829
PkrI	GCNGC	3 cut(s)	149, 427, 925
PleI	GAGTC	3 cut(s)	44, 583, 814
PpsI	GAGTC	3 cut(s)	44, 583, 814
PscI	ACATGT	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	105
PspN4I	GGNNCC	8 cut(s)	13, 118, 183, 403, 450, 749, 870, 984
PspPI	GGNCC	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	3 cut(s)	719, 982, 990
PsyI	GACNNNGTC	1 cut(s)	829
RsaI	GTAC	3 cut(s)	118, 881, 1219
RsaNI	GTAC	3 cut(s)	117, 880, 1218
RseI	CAYNNNNRTG	1 cut(s)	915
SaqAI	TTAA	4 cut(s)	354, 774, 996, 1151
SatI	GCNGC	3 cut(s)	148, 426, 924
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	3 cut(s)	45, 584, 814
ScrFI	CCNGG	2 cut(s)	9, 1120
SfaNI	GCATC	2 cut(s)	553, 910
SfcI	CTRYAG	1 cut(s)	723
SgrAI	CRCCGGYG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	915
Sse9I	AATT	3 cut(s)	300, 611, 1046
SsiI	CCGC	6 cut(s)	147, 154, 378, 440, 452, 742
SspMI	CTAG	2 cut(s)	33, 1146
StyD4I	CCNGG	2 cut(s)	7, 1118
StyI	CCWWGG	1 cut(s)	891
TaaI	ACNGT	3 cut(s)	46, 116, 1099
TaiI	ACGT	3 cut(s)	108, 515, 771
TaqI	TCGA	6 cut(s)	51, 93, 171, 291, 858, 1070
TasI	AATT	3 cut(s)	300, 611, 1046
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	619, 1000
Tru1I	TTAA	4 cut(s)	354, 774, 996, 1151
Tru9I	TTAA	4 cut(s)	354, 774, 996, 1151
TscAI	CASTG	3 cut(s)	1118, 1230, 1245
TseFI	GTSAC	1 cut(s)	1198
TseI	GCWGC	2 cut(s)	425, 923
Tsp45I	GTSAC	1 cut(s)	1198
TspDTI	ATGAA	6 cut(s)	7, 235, 384, 698, 771, 858
TspGWI	ACGGA	2 cut(s)	823, 1100
TspRI	CASTG	3 cut(s)	1118, 1230, 1245
Tth111I	GACNNNGTC	1 cut(s)	829
XapI	RAATTY	2 cut(s)	300, 611
XceI	RCATGY	2 cut(s)	127, 349
XspI	CTAG	2 cut(s)	33, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.