RchiOBHm_Chr6g0261011

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
15972219 .. 15973697
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23407

Sequence Viewer

Length: 1479 bp
ATGCTACTCAATTTGATAACAATGTCTTCATCTTCTTCTAACCCATCTAACTCATCATCATCTGCACCAGCAAAGCTTCCATTGAAACCAATCCCAGGCGACTATGGCGTACCCTTCTACGGTGCCATCAAAGATCGTTACAACTATTTCTACAACCAAGGAAAAGATGAGTTCTTCAAAACCCGAATCCAGAAGTACAACTCCACAGTCTTCCGTACCAATATGCCACCCGGCCCCTTCATCGCTCGAAACCCTAAAGTCATTGCAGTCTTCAATGCCGTGAGCTTCCCTGTTCTTTTCGACACCTCCAAAGTCGAAAAACGTAATGTCTTGGACGGCACCTACATGCCTTCTACATCCTTCACCGGCGGCTATCGCGTCTGCGCCTATCTTGACCCCTCAGAACCGAACCACGCTTCTCTCAAGCGCTTCTTATTGTCTCTACTCGCCAGTCGCCACCACAAGTTCATCCCACTCTTCCAAAACCACTTGTCCGACCTCTTTCTCAACCTGGAAACTGAAATTTCAAAAATTGGCAAAGCAGACTTCAACACCTCGAGCGATGACATGTCCTTCAATTTCGTTTTCTCGTTGTTATGTGGATCAGAAAGTACTTCATTGGGTTCTAAAGGGCCGAACCTGGTGGCTGTATGGCTAACGCCGCAACTTGCACCGCAAATCACACTCGGGTTGCCCAAGTTGCTGAGCTTTGCTGAAGATTTCTTGCTGCACACGTTTTCCTACCCTGCATTTTTGGTCAAATCGACCTACAAGAAGCTCTACGATGCGTTTTACGAGTCGTCGGCTTCGGTTTTGGATGAGGCTGAGAATAGTTTTGGGATTCCGAGAGACGAAGCTTGCCACAACCTTTTGTTTTTGGCTTGCTTCAATGCTTTTGGAGGCATGAAGCTTTTGTTCCCTACTTTAATCAAGTGGGTTGGATCTGCAGGAGAGAATTTGCACCGCCAGCTCAGAAATGAAATCAGGGCTGTTGTTAAGGAAAATGATGGGAATGTTACTTTCTCGGCGTTGGATAAGATGACTTTGACCAAGTCTGTGGTTTATGAGGCTTTGAGGATTGAACCTCCGGTTCCGTTCCAGTACGGGAAGGCCAAGGAGGATATGGTGGTCCATAGCCATGATGCAGCATTTGAGATCAAGAAAGGGGAAATGATCTTCGGATATCAACCGTTCGCCACGAAGGATCCGAAGATTTTCGAGAATCCGGAGGAGTTTGTGGGGCATAGGTTTGTAGGAGAAGGTGAGAAACTGTTGAAGTATGTTTATTGGTCGAATGGTCGCGAGACTGATGATCCAACGGTGGAGAATAAGCAGTGTGCTGGGAAGGATTTGGTGTTGCTTGTGTCTAGGTTAATGTTGGTAGAGTTTTTCCTTCGGTATGACACTTGTACCATTGATGTGACTACAGTTTCATCGGGTACTTCAGTGACATTCAGAACATTGACCAAAGCCTCCTGA

Protein Analysis

492

Amino Acids

55.15

Weight (kDa)

7.61

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 321 - 429 5.6e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 122, 338
AccII CGCG 2 cut(s) 378, 1302
AccIII TCCGGA 1 cut(s) 1225
AciI CCGC 4 cut(s) 369, 662, 674, 964
AclWI GGATC 5 cut(s) 610, 949, 1199, 1212, 1307
AcsI RAATTY 2 cut(s) 522, 955
AcuI CTGAAG 2 cut(s) 735, 1428
AfaI GTAC 7 cut(s) 111, 197, 217, 613, 1103, 1411, 1441
AfeI AGCGCT 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 95, 119
AflIII ACRYGT 2 cut(s) 567, 732
AgsI TTSAA 9 cut(s) 85, 178, 274, 528, 550, 577, 889, 1082, 1276
AjnI CCWGG 3 cut(s) 94, 510, 639
AluBI AGCT 7 cut(s) 76, 285, 708, 778, 857, 910, 970
AluI AGCT 7 cut(s) 76, 285, 708, 778, 857, 910, 970
Alw26I GTCTC 3 cut(s) 444, 843, 1298
AlwI GGATC 5 cut(s) 610, 949, 1199, 1212, 1307
Ama87I CYCGRG 2 cut(s) 556, 686
Aor13HI TCCGGA 1 cut(s) 1225
Aor51HI AGCGCT 1 cut(s) 428
AoxI GGCC 3 cut(s) 232, 632, 1110
ApeKI GCWGC 2 cut(s) 727, 1145
ApoI RAATTY 2 cut(s) 522, 955
Asp700I GAANNNNTTC 1 cut(s) 1214
AspLEI GCGC 2 cut(s) 386, 429
AspS9I GGNCC 3 cut(s) 233, 632, 1129
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 355, 1274
AvaI CYCGRG 2 cut(s) 556, 686
AvaII GGWCC 1 cut(s) 1129
BaeI ACNNNNGTAYC 4 cut(s) 1393, 1426, 1431, 1464
BamHI GGATCC 1 cut(s) 1204
BanI GGYRCC 2 cut(s) 122, 338
BbsI GAAGAC 3 cut(s) 18, 202, 262
BbvI GCAGC 2 cut(s) 714, 1157
BccI CCATC 3 cut(s) 52, 134, 1001
BceAI ACGGC 2 cut(s) 263, 352
BciT130I CCWGG 3 cut(s) 96, 512, 641
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 444, 843, 1298
BfaI CTAG 1 cut(s) 1368
BfmI CTRYAG 2 cut(s) 945, 1425
BfoI RGCGCY 1 cut(s) 430
BisI GCNGC 4 cut(s) 370, 662, 728, 1146
BlpI GCTNAGC 1 cut(s) 704
BlsI GCNGC 4 cut(s) 371, 663, 729, 1147
BmcAI AGTACT 1 cut(s) 613
Bme1390I CCNGG 4 cut(s) 96, 231, 512, 641
Bme18I GGWCC 1 cut(s) 1129
BmeT110I CYCGRG 2 cut(s) 556, 686
BmgT120I GGNCC 3 cut(s) 233, 632, 1129
BmiI GGNNCC 5 cut(s) 124, 235, 340, 1092, 1206
BmrFI CCNGG 4 cut(s) 96, 231, 512, 641
BmsI GCATC 2 cut(s) 775, 1132
BpiI GAAGAC 3 cut(s) 18, 202, 262
Bpu1102I GCTNAGC 1 cut(s) 704
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 94, 157, 1113
BsaWI WCCGGW 2 cut(s) 1087, 1225
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 119
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 2 cut(s) 450, 1099
Bse3DI GCAATG 1 cut(s) 261
BseAI TCCGGA 1 cut(s) 1225
BseBI CCWGG 3 cut(s) 96, 512, 641
BseDI CCNNGG 3 cut(s) 94, 157, 1113
BseGI GGATG 3 cut(s) 356, 468, 823
BseLI CCNNNNNNNGG 2 cut(s) 95, 119
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 4 cut(s) 414, 695, 816, 985
BseNI ACTGG 2 cut(s) 450, 1099
BseRI GAGGAG 1 cut(s) 1244
BseXI GCAGC 2 cut(s) 714, 1157
BseYI CCCAGC 1 cut(s) 1340
BsgI GTGCAG 2 cut(s) 48, 713
Bsh1236I CGCG 2 cut(s) 378, 1302
BshFI GGCC 3 cut(s) 234, 634, 1112
BshNI GGYRCC 2 cut(s) 122, 338
BsiHKCI CYCGRG 2 cut(s) 556, 686
BsiSI CCGG 4 cut(s) 231, 366, 1088, 1226
BslI CCNNNNNNNGG 2 cut(s) 95, 119
BsmAI GTCTC 3 cut(s) 444, 843, 1298
BsmBI CGTCTC 1 cut(s) 843
BsnI GGCC 3 cut(s) 234, 634, 1112
BsoBI CYCGRG 2 cut(s) 556, 686
Bsp13I TCCGGA 1 cut(s) 1225
Bsp143I GATC 7 cut(s) 133, 602, 941, 1155, 1173, 1204, 1312
Bsp1720I GCTNAGC 1 cut(s) 704
Bsp68I TCGCGA 1 cut(s) 1302
BspACI CCGC 4 cut(s) 369, 662, 674, 964
BspANI GGCC 3 cut(s) 234, 634, 1112
BspCNI CTCAG 4 cut(s) 413, 696, 817, 984
BspEI TCCGGA 1 cut(s) 1225
BspFNI CGCG 2 cut(s) 378, 1302
BspLI GGNNCC 5 cut(s) 124, 235, 340, 1092, 1206
BspMAI CTGCAG 1 cut(s) 949
BspPI GGATC 5 cut(s) 610, 949, 1199, 1212, 1307
BspT107I GGYRCC 2 cut(s) 122, 338
BsrDI GCAATG 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 2 cut(s) 450, 1099
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 3 cut(s) 94, 157, 1113
BssMI GATC 7 cut(s) 133, 602, 941, 1155, 1173, 1204, 1312
BssT1I CCWWGG 2 cut(s) 157, 1113
Bst2UI CCWGG 3 cut(s) 96, 512, 641
Bst4CI ACNGT 6 cut(s) 122, 208, 1191, 1272, 1321, 1429
Bst6I CTCTTC 1 cut(s) 482
BstC8I GCNNGC 3 cut(s) 859, 883, 968
BstDEI CTNAG 4 cut(s) 400, 704, 825, 971
BstF5I GGATG 3 cut(s) 356, 468, 823
BstFNI CGCG 2 cut(s) 378, 1302
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 2 cut(s) 386, 429
BstKTI GATC 7 cut(s) 136, 605, 944, 1158, 1176, 1207, 1315
BstMAI GTCTC 3 cut(s) 444, 843, 1298
BstMBI GATC 7 cut(s) 133, 602, 941, 1155, 1173, 1204, 1312
BstMWI GCNNNNNNNGC 5 cut(s) 105, 375, 661, 700, 967
BstNI CCWGG 3 cut(s) 96, 512, 641
BstNSI RCATGY 2 cut(s) 349, 571
BstSCI CCNGG 4 cut(s) 94, 229, 510, 639
BstSFI CTRYAG 2 cut(s) 945, 1425
BstUI CGCG 2 cut(s) 378, 1302
BstV1I GCAGC 2 cut(s) 714, 1157
BstV2I GAAGAC 3 cut(s) 18, 202, 262
BstX2I RGATCY 2 cut(s) 941, 1204
BstXI CCANNNNNNTGG 1 cut(s) 1057
BstYI RGATCY 2 cut(s) 941, 1204
BsuRI GGCC 3 cut(s) 234, 634, 1112
BtgZI GCGATG 2 cut(s) 226, 576
BtsCI GGATG 3 cut(s) 356, 468, 823
BtsI GCAGTG 1 cut(s) 1340
BtsIMutI CAGTG 2 cut(s) 1340, 1452
BtuMI TCGCGA 1 cut(s) 1302
Cac8I GCNNGC 3 cut(s) 859, 883, 968
CfoI GCGC 2 cut(s) 386, 429
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 3 cut(s) 233, 632, 1129
CseI GACGC 1 cut(s) 367
CsiI ACCWGGT 1 cut(s) 639
Csp6I GTAC 7 cut(s) 110, 196, 216, 612, 1102, 1410, 1440
CviAII CATG 4 cut(s) 346, 568, 904, 1139
CviQI GTAC 7 cut(s) 110, 196, 216, 612, 1102, 1410, 1440
DdeI CTNAG 4 cut(s) 400, 704, 825, 971
DpnI GATC 7 cut(s) 135, 604, 943, 1157, 1175, 1206, 1314
DpnII GATC 7 cut(s) 133, 602, 941, 1155, 1173, 1204, 1312
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Eco130I CCWWGG 2 cut(s) 157, 1113
Eco32I GATATC 1 cut(s) 1184
Eco47I GGWCC 1 cut(s) 1129
Eco47III AGCGCT 1 cut(s) 428
Eco57I CTGAAG 2 cut(s) 735, 1428
Eco88I CYCGRG 2 cut(s) 556, 686
EcoRII CCWGG 3 cut(s) 94, 510, 639
EcoRV GATATC 1 cut(s) 1184
EcoT14I CCWWGG 2 cut(s) 157, 1113
ErhI CCWWGG 2 cut(s) 157, 1113
Esp3I CGTCTC 1 cut(s) 843
FaeI CATG 4 cut(s) 349, 571, 907, 1142
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 4 cut(s) 345, 567, 903, 1138
Fnu4HI GCNGC 4 cut(s) 370, 662, 728, 1146
FokI GGATG 3 cut(s) 343, 455, 830
Fsp4HI GCNGC 4 cut(s) 370, 662, 728, 1146
FspBI CTAG 1 cut(s) 1368
GlaI GCGC 2 cut(s) 385, 428
GluI GCNGC 4 cut(s) 370, 662, 728, 1146
GsaI CCCAGC 1 cut(s) 1344
HaeII RGCGCY 1 cut(s) 430
HaeIII GGCC 3 cut(s) 234, 634, 1112
HapII CCGG 4 cut(s) 231, 366, 1088, 1226
HgaI GACGC 1 cut(s) 367
HhaI GCGC 2 cut(s) 386, 429
Hin1II CATG 4 cut(s) 349, 571, 907, 1142
Hin6I GCGC 2 cut(s) 384, 427
HinP1I GCGC 2 cut(s) 384, 427
HindIII AAGCTT 3 cut(s) 74, 855, 908
HinfI GANTC 4 cut(s) 186, 797, 841, 1222
HpaII CCGG 4 cut(s) 231, 366, 1088, 1226
HphI GGTGA 2 cut(s) 355, 1274
Hpy188I TCNGA 8 cut(s) 403, 496, 607, 846, 974, 1181, 1209, 1457
Hpy188III TCNNGA 7 cut(s) 190, 392, 1159, 1219, 1226, 1301, 1476
Hpy99I CGWCG 1 cut(s) 805
HpyCH4III ACNGT 6 cut(s) 122, 208, 1191, 1272, 1321, 1429
HpyCH4IV ACGT 2 cut(s) 322, 734
HpyCH4V TGCA 8 cut(s) 65, 266, 671, 730, 749, 947, 961, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 375, 661, 700, 967
HpyF3I CTNAG 4 cut(s) 400, 704, 825, 971
HpySE526I ACGT 2 cut(s) 322, 734
Hsp92II CATG 4 cut(s) 349, 571, 907, 1142
HspAI GCGC 2 cut(s) 384, 427
Kpn2I TCCGGA 1 cut(s) 1225
Kzo9I GATC 7 cut(s) 133, 602, 941, 1155, 1173, 1204, 1312
Lsp1109I GCAGC 2 cut(s) 714, 1157
LweI GCATC 2 cut(s) 775, 1132
MabI ACCWGGT 1 cut(s) 639
MaeI CTAG 1 cut(s) 1368
MaeII ACGT 2 cut(s) 322, 734
MaeIII GTNAC 4 cut(s) 137, 1015, 1420, 1447
MalI GATC 7 cut(s) 135, 604, 943, 1157, 1175, 1206, 1314
MboI GATC 7 cut(s) 133, 602, 941, 1155, 1173, 1204, 1312
MflI RGATCY 2 cut(s) 941, 1204
MluCI AATT 5 cut(s) 10, 522, 531, 577, 955
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 4 cut(s) 519, 919, 1011, 1340
MroI TCCGGA 1 cut(s) 1225
MroXI GAANNNNTTC 1 cut(s) 1214
MseI TTAA 3 cut(s) 926, 996, 1373
MslI CAYNNNNRTG 3 cut(s) 344, 1137, 1418
MspI CCGG 4 cut(s) 231, 366, 1088, 1226
MspR9I CCNGG 4 cut(s) 96, 231, 512, 641
MvaI CCWGG 3 cut(s) 96, 512, 641
MvnI CGCG 2 cut(s) 378, 1302
MwoI GCNNNNNNNGC 5 cut(s) 105, 375, 661, 700, 967
NciI CCSGG 1 cut(s) 231
NdeII GATC 7 cut(s) 133, 602, 941, 1155, 1173, 1204, 1312
NlaIII CATG 4 cut(s) 349, 571, 907, 1142
NlaIV GGNNCC 5 cut(s) 124, 235, 340, 1092, 1206
NmeAIII GCCGAG 1 cut(s) 1004
NmuCI GTSAC 2 cut(s) 1420, 1447
NruI TCGCGA 1 cut(s) 1302
NspI RCATGY 2 cut(s) 349, 571
PaeR7I CTCGAG 1 cut(s) 556
PciI ACATGT 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 1205
PdmI GAANNNNTTC 1 cut(s) 1214
PfeI GAWTC 3 cut(s) 186, 841, 1222
PflFI GACNNNGTC 1 cut(s) 1051
PkrI GCNGC 4 cut(s) 371, 663, 729, 1147
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
PscI ACATGT 1 cut(s) 567
Psp6I CCWGG 3 cut(s) 94, 510, 639
PspFI CCCAGC 1 cut(s) 1340
PspGI CCWGG 3 cut(s) 94, 510, 639
PspN4I GGNNCC 5 cut(s) 124, 235, 340, 1092, 1206
PspPI GGNCC 3 cut(s) 233, 632, 1129
PspXI VCTCGAGB 1 cut(s) 556
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 2 cut(s) 941, 1204
PsyI GACNNNGTC 1 cut(s) 1051
RruI TCGCGA 1 cut(s) 1302
RsaI GTAC 7 cut(s) 111, 197, 217, 613, 1103, 1411, 1441
RsaNI GTAC 7 cut(s) 110, 196, 216, 612, 1102, 1410, 1440
RseI CAYNNNNRTG 3 cut(s) 344, 1137, 1418
SaqAI TTAA 3 cut(s) 926, 996, 1373
SatI GCNGC 4 cut(s) 370, 662, 728, 1146
Sau3AI GATC 7 cut(s) 133, 602, 941, 1155, 1173, 1204, 1312
Sau96I GGNCC 3 cut(s) 233, 632, 1129
ScaI AGTACT 1 cut(s) 613
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 4 cut(s) 96, 231, 512, 641
SexAI ACCWGGT 1 cut(s) 639
SfaNI GCATC 2 cut(s) 775, 1132
SfcI CTRYAG 2 cut(s) 945, 1425
Sfr274I CTCGAG 1 cut(s) 556
SgrAI CRCCGGYG 1 cut(s) 365
SinI GGWCC 1 cut(s) 1129
SlaI CTCGAG 1 cut(s) 556
SmiMI CAYNNNNRTG 3 cut(s) 344, 1137, 1418
SmlI CTYRAG 2 cut(s) 422, 556
SmoI CTYRAG 2 cut(s) 422, 556
Sse9I AATT 5 cut(s) 10, 522, 531, 577, 955
SsiI CCGC 4 cut(s) 369, 662, 674, 964
SspMI CTAG 1 cut(s) 1368
StyD4I CCNGG 4 cut(s) 94, 229, 510, 639
StyI CCWWGG 2 cut(s) 157, 1113
TaaI ACNGT 6 cut(s) 122, 208, 1191, 1272, 1321, 1429
TaiI ACGT 2 cut(s) 325, 737
TaqI TCGA 7 cut(s) 247, 300, 315, 557, 764, 1218, 1292
TasI AATT 5 cut(s) 10, 522, 531, 577, 955
TatI WGTACW 2 cut(s) 195, 611
TauI GCSGC 2 cut(s) 372, 664
TfiI GAWTC 3 cut(s) 186, 841, 1222
Tru1I TTAA 3 cut(s) 926, 996, 1373
Tru9I TTAA 3 cut(s) 926, 996, 1373
TscAI CASTG 2 cut(s) 1340, 1452
TseFI GTSAC 2 cut(s) 1420, 1447
TseI GCWGC 2 cut(s) 727, 1145
Tsp45I GTSAC 2 cut(s) 1420, 1447
TspDTI ATGAA 7 cut(s) 18, 229, 457, 606, 920, 993, 1422
TspGWI ACGGA 2 cut(s) 203, 1083
TspRI CASTG 2 cut(s) 1340, 1452
Tth111I GACNNNGTC 1 cut(s) 1051
VpaK11BI GGWCC 1 cut(s) 1129
XapI RAATTY 2 cut(s) 522, 955
XceI RCATGY 2 cut(s) 349, 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XhoI CTCGAG 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 1214
XspI CTAG 1 cut(s) 1368
ZrmI AGTACT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.