Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000777

Physical Location & Seq

Genomic Coordinates Forward (+)

79115913 .. 79124186

Gene Structure 8274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0593300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAAGAGAAGCAGAGAGTAGCCACTGGAATTGCAAATGATATGAGCTTCATCATAGACCAGAAGAAGAAGACCAAGCCGGACTACGACGTGCCGTTCATTGAGCGTTGGCCGTCGCTAAAGCCCTTTGTGAATGGCGGACTCGCTGCGTTTCTTCAAGGCTTGACCCTTTATGTTCCTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCCAGATTTCTCGGCTTCAATATTCTTGCCAAGTCGTGTCCTGATGGGATTGTGATCCGTACTTTATCTACAAGCCTTCAACTTGGATTATTCGAGACTCTAAGAAACAAAGCAATTGCTACCAATGATGGAATGGCATTAACTCTTTATCAGGAAACTGCTTGCGGGTTGATTGCCGGGGCGGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCGCAGGTTGATCCTACGACTTTATCAGTAGTGCAGCGTGCCAAATACGGAAACATATTTGATGCTCTCTACTCTATGAGTGGCAATAGAAAAATTTCAGCACTATGGACAAATGCCGGTCCTTATGTGAAGACAAGAATGGGGACTAATGTGGGTATGCTCGCATCATATAATCCAAGCCTCTGTTATCTCAGAGACTCATGTGGTTTAAGCGAAACAAGAGCACAGCTGGGTGCAAGTGTGGTTTCAGCGTTCTTCGGTGCAGCATGCTCTGTACCAGTAAAAAATGTTCTAGCACAAGGGAAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCGAGAGGACCCCTTGCATTCTTTTCAGGATTTTCTGGACAGTTTGCACTTGTTGGACCTCCTATCATGATTCTGTGGTTTGCTTATGAAAATGTTCGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

301

Amino Acids

32.67

Weight (kDa)

9.42

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07410 FvH4_2g07421 FvH4_2g07423 FvH4_5g16260
malus_domestica	MD10G1085800.v1.1
prunus_persica	Prupe.8G110100_v2.0.a1
pyrus_communis	pycom10g03730 pycom10g06740
rosa_chinensis	RchiOBHm_Chr6g0260901 RchiOBHm_Chr6g0260921 RchiOBHm_Chr6g0260931 RchiOBHm_Chr6g0260961 RchiOBHm_Chr6g0261011
rosa_laevigata	RLG00000014467 RLG00000014470 RLG00000014471 RLG00000014473 RLG00000014475 RLG00000014476 RLG00000014477 RLG00000014478 RLG00000018641 RLG00000022453
rosa_multiflora	Rmu_sc0003025.1_g000005 Rmu_sc0003337.1_g000004 Rmu_sc0003337.1_g000028 Rmu_sc0005816.1_g000002 Rmu_sc0005816.1_g000003 Rmu_sc0005816.1_g000011 Rmu_sc0005816.1_g000029 Rmu_sc0005980.1_g000002 Rmu_sc0009186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00122160 Rroxscaffold_7G00207490 Rroxscaffold_7G00207500 Rroxscaffold_7G00207550 Rroxscaffold_7G00207560 Rroxscaffold_7G00207620
rosa_rugosa	Rorug02G0235500.1 Rorug05G0593300 Rorug05G0593300 Rorug05G0593400 Rorug05G0593500.1 Rorug05G0594400
rosa_samantha	Rh6AG112800 Rh6AG113000 Rh6AG113100 Rh6AG113300 Rh6AG113900 Rh6BG106900 Rh6BG107000 Rh6BG107200 Rh6BG107500 Rh6CG103900 Rh6CG104000 Rh6CG104300 Rh6CG104400 Rh6CG104600 Rh6DG094800 Rh6DG094900 Rh6DG095100 Rh6DG095200 Rh6DG095400
rosa_wichuraiana	Rw0G011910 Rw6G009600 Rw6G009610 Rw6G009620 Rw6G009630 Rw6G009670 Rw6G009710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	448
AciI	CCGC	4 cut(s)	138, 393, 410, 455
AclWI	GGATC	2 cut(s)	277, 458
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	546, 789
AcuI	CTGAAG	1 cut(s)	409
AfaI	GTAC	2 cut(s)	289, 729
AgsI	TTSAA	3 cut(s)	158, 247, 308
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	771
AluBI	AGCT	2 cut(s)	48, 682
AluI	AGCT	2 cut(s)	48, 682
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	3 cut(s)	317, 455, 642
AlwI	GGATC	2 cut(s)	277, 458
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	4 cut(s)	146, 185, 487, 716
ApoI	RAATTY	2 cut(s)	546, 789
Asp700I	GAANNNNTTC	2 cut(s)	547, 891
AspS9I	GGNCC	3 cut(s)	572, 806, 854
AsuC2I	CCSGG	1 cut(s)	406
AvaII	GGWCC	3 cut(s)	572, 806, 854
BaeGI	GKGCMC	1 cut(s)	784
BbsI	GAAGAC	2 cut(s)	77, 590
Bbv12I	GWGCWC	1 cut(s)	679
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	133, 172, 499, 728
BccI	CCATC	3 cut(s)	197, 266, 350
BceAI	ACGGC	2 cut(s)	79, 97
BciT130I	CCWGG	1 cut(s)	773
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	317, 455, 642
BfaI	CTAG	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	448
BglI	GCCNNNNNGGC	1 cut(s)	410
BisI	GCNGC	5 cut(s)	147, 186, 411, 488, 717
BlsI	GCNGC	5 cut(s)	148, 187, 412, 489, 718
Bme1390I	CCNGG	2 cut(s)	406, 773
Bme18I	GGWCC	3 cut(s)	572, 806, 854
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	572, 806, 854
BmiI	GGNNCC	2 cut(s)	766, 808
BmrFI	CCNGG	2 cut(s)	406, 773
BmsI	GCATC	2 cut(s)	505, 626
BpiI	GAAGAC	2 cut(s)	77, 590
Bpu10I	CCTNAGC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	405, 771
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	2 cut(s)	31, 731
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	405, 771
BseJI	GATNNNNATC	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	405, 658
BseNI	ACTGG	2 cut(s)	31, 731
BseRI	GAGGAG	1 cut(s)	757
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	4 cut(s)	133, 172, 499, 728
BseYI	CCCAGC	1 cut(s)	682
BsgI	GTGCAG	2 cut(s)	506, 735
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	679
BsiSI	CCGG	3 cut(s)	80, 405, 570
BslFI	GGGAC	2 cut(s)	213, 610
BsmAI	GTCTC	3 cut(s)	317, 455, 642
BsmFI	GGGAC	2 cut(s)	213, 610
BsmI	GAATGC	1 cut(s)	815
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	679, 784
Bsp143I	GATC	2 cut(s)	282, 463
BspACI	CCGC	4 cut(s)	138, 393, 410, 455
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	406, 657
BspHI	TCATGA	1 cut(s)	864
BspLI	GGNNCC	2 cut(s)	766, 808
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	2 cut(s)	277, 458
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	31, 731
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	405, 771
BssMI	GATC	2 cut(s)	282, 463
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	1 cut(s)	840
BstC8I	GCNNGC	4 cut(s)	391, 492, 615, 721
BstDEI	CTNAG	3 cut(s)	329, 414, 644
BstKTI	GATC	2 cut(s)	285, 466
BstMAI	GTCTC	3 cut(s)	317, 455, 642
BstMBI	GATC	2 cut(s)	282, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 416
BstNI	CCWGG	1 cut(s)	773
BstNSI	RCATGY	2 cut(s)	450, 723
BstSCI	CCNGG	2 cut(s)	404, 771
BstSLI	GKGCMC	1 cut(s)	784
BstV1I	GCAGC	4 cut(s)	133, 172, 499, 728
BstV2I	GAAGAC	2 cut(s)	77, 590
BsuRI	GGCC	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	4 cut(s)	391, 492, 615, 721
CciI	TCATGA	1 cut(s)	864
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	3 cut(s)	572, 806, 854
Csp6I	GTAC	2 cut(s)	288, 728
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	4 cut(s)	447, 654, 720, 865
CviQI	GTAC	2 cut(s)	288, 728
DdeI	CTNAG	3 cut(s)	329, 414, 644
DpnI	GATC	2 cut(s)	284, 465
DpnII	GATC	2 cut(s)	282, 463
EaeI	YGGCCR	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	153
Eco47I	GGWCC	3 cut(s)	572, 806, 854
Eco57I	CTGAAG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	806
EcoRII	CCWGG	1 cut(s)	771
FaeI	CATG	4 cut(s)	450, 657, 723, 868
FaqI	GGGAC	2 cut(s)	213, 610
FatI	CATG	4 cut(s)	446, 653, 719, 864
FauI	CCCGC	2 cut(s)	386, 462
Fnu4HI	GCNGC	5 cut(s)	147, 186, 411, 488, 717
Fsp4HI	GCNGC	5 cut(s)	147, 186, 411, 488, 717
FspBI	CTAG	1 cut(s)	746
GluI	GCNGC	5 cut(s)	147, 186, 411, 488, 717
GsaI	CCCAGC	1 cut(s)	686
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	3 cut(s)	80, 405, 570
Hin1II	CATG	4 cut(s)	450, 657, 723, 868
HinfI	GANTC	4 cut(s)	141, 325, 650, 868
HpaII	CCGG	3 cut(s)	80, 405, 570
Hpy188I	TCNGA	2 cut(s)	647, 897
Hpy188III	TCNNGA	7 cut(s)	269, 322, 380, 801, 825, 834, 865
Hpy99I	CGWCG	2 cut(s)	92, 118
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	840
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	7 cut(s)	35, 446, 487, 689, 716, 815, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 416
HpyF3I	CTNAG	3 cut(s)	329, 414, 644
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	450, 657, 723, 868
Kzo9I	GATC	2 cut(s)	282, 463
LmnI	GCTCC	1 cut(s)	770
Lsp1109I	GCAGC	4 cut(s)	133, 172, 499, 728
LweI	GCATC	2 cut(s)	505, 626
MaeI	CTAG	1 cut(s)	746
MaeII	ACGT	1 cut(s)	90
MalI	GATC	2 cut(s)	284, 465
MboI	GATC	2 cut(s)	282, 463
MboII	GAAGA	7 cut(s)	17, 76, 79, 82, 146, 595, 700
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	679, 784
MluCI	AATT	4 cut(s)	30, 342, 546, 789
MlyI	GAGTC	3 cut(s)	135, 319, 644
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	5 cut(s)	409, 644, 778, 797, 867
MroXI	GAANNNNTTC	2 cut(s)	547, 891
MseI	TTAA	3 cut(s)	368, 662, 786
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	3 cut(s)	80, 405, 570
MspR9I	CCNGG	2 cut(s)	406, 773
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	815
MvaI	CCWGG	1 cut(s)	773
MwoI	GCNNNNNNNGC	2 cut(s)	410, 416
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	2 cut(s)	282, 463
NlaIII	CATG	4 cut(s)	450, 657, 723, 868
NlaIV	GGNNCC	2 cut(s)	766, 808
NmeAIII	GCCGAG	1 cut(s)	219
NspI	RCATGY	2 cut(s)	450, 723
PaeI	GCATGC	1 cut(s)	723
PagI	TCATGA	1 cut(s)	864
PctI	GAATGC	1 cut(s)	815
PdmI	GAANNNNTTC	2 cut(s)	547, 891
PfeI	GAWTC	1 cut(s)	868
PkrI	GCNGC	5 cut(s)	148, 187, 412, 489, 718
PleI	GAGTC	3 cut(s)	135, 319, 644
PpsI	GAGTC	3 cut(s)	135, 319, 644
PpuMI	RGGWCCY	1 cut(s)	806
Psp5II	RGGWCCY	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	771
PspFI	CCCAGC	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	2 cut(s)	766, 808
PspPI	GGNCC	3 cut(s)	572, 806, 854
PspPPI	RGGWCCY	1 cut(s)	806
PsrI	GAACNNNNNNTAC	2 cut(s)	726, 758
PvuII	CAGCTG	1 cut(s)	682
RsaI	GTAC	2 cut(s)	289, 729
RsaNI	GTAC	2 cut(s)	288, 728
SaqAI	TTAA	3 cut(s)	368, 662, 786
SatI	GCNGC	5 cut(s)	147, 186, 411, 488, 717
Sau3AI	GATC	2 cut(s)	282, 463
Sau96I	GGNCC	3 cut(s)	572, 806, 854
SchI	GAGTC	3 cut(s)	135, 319, 644
ScrFI	CCNGG	2 cut(s)	406, 773
SduI	GDGCHC	2 cut(s)	679, 784
SetI	ASST	5 cut(s)	50, 93, 462, 684, 859
SfaNI	GCATC	2 cut(s)	505, 626
SinI	GGWCC	3 cut(s)	572, 806, 854
SphI	GCATGC	1 cut(s)	723
Sse9I	AATT	4 cut(s)	30, 342, 546, 789
SsiI	CCGC	4 cut(s)	138, 393, 410, 455
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	746
StyD4I	CCNGG	2 cut(s)	404, 771
TaaI	ACNGT	1 cut(s)	840
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	321, 800
TasI	AATT	4 cut(s)	30, 342, 546, 789
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	868
Tru1I	TTAA	3 cut(s)	368, 662, 786
Tru9I	TTAA	3 cut(s)	368, 662, 786
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	4 cut(s)	146, 185, 487, 716
TspDTI	ATGAA	3 cut(s)	40, 88, 900
TspGWI	ACGGA	2 cut(s)	275, 516
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	3 cut(s)	572, 806, 854
XapI	RAATTY	2 cut(s)	546, 789
XceI	RCATGY	2 cut(s)	450, 723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmnI	GAANNNNTTC	2 cut(s)	547, 891
XspI	CTAG	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.