Rw6G009670

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
16239118 .. 16240529
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009670.1

Sequence Viewer

Length: 1374 bp
ATGTCTTCATCTTCTTCTTCTTCTTCTTCTAACCTATCAAAGTCATCATCATCTACACCACCAAAGCTTCCATTGAAACCAATTCCAGGTGACTATGGCTTACCCTTCTTCGGTGCCATCAAAGATCGTTACAACTATTTCTACAACCAAGGAAAAGATGAGTTCTTCAAAACCCGAATCAGAAAGTACAACTCCACAGTCTTTCGTACCAATATGCCACCCGGCCCCTTCATCGCTTCAAACCCTAAAGTCATTGCAGTCCTCGACACCGTGAGCTTCCCTGTTCTTTTCGACACTTCCAAAGTCGAAAAACATAATGTCCTGGATGGCACTTACATGCCTTCAACATCCTTCACCAGCGGCTATCGCGTCTGCGCCTATCTCGACCCCTCAGAACCGAACCACGCTTCTCTCAAGTGCTTCTTCTTGTCTCTACTTGCCAATCGCCACCACAAGTTCATCCCACTCTTCCAAAACCACTTGTCCGACCTCTTTCTCAACCTGGAAACTGAAATTTCAAAAATTGGCAAAGCAGACTTCAACACCTCGAACAACAACATAAAGTACTTCATTGGGTTCCAAAGGGCCGACCCTGGTGGCCGTATGGGTAGCGCCGCAACTTGCACCGCAGATCACACTCGGGTGGCCAAGTTGCTGAGCTTTGCTGAAGATTTCTTGCTGCACACGTTTTCCTACCCTTCATTTTTTGTCAAATCGACCTACAAGAAGCTCTACGATGCGTTTTACGAGTCGTCAGCTTCGGTTTTGGATGAGGCTGAGAATAGTTTTGGGATTCCGAGAGACGAAGCTTGTCACAACCTGTTGTTTTTGGCTTGCTTCAATGCTTTTGGTGGCATGAAGCTTTTGTTCCCTGCTTTAATCAAGTGGGTTGGATCTGCAGGAGAGGATTTGCACCGCCAGCTCCGAAATGAAATCAGGGCTGTTGTTAAGGAAAATGATGGGAATGTTACTTTCTCGGCGTTGGATAAGATGACTTTGACCAAGTCTGTGGTTTATGAGGCTTTGAGGATTGAACCTCCGGTTCTGTTTCAGTACGGGAAGGCCAAGGAGGATATGGTGGTCCATAGCCATGATGCAGCATTTGAGATCAAGAACAGGGAAATGATCTTCGGATATCAGCCGTTCGCCATGAAGGATCCGAAGATTTTCGAGAATCCAGAGGAGTTTGTGGGGCATAGGTTTGTAGGAGAAGGTGAGAAACTGTTGAAGTATGTTTATTGGTCAAATGGTCGCGAGACTGATGATCCAACGGTGGAGAATAAGCAGTGTGCCGGGAAGGATTTGGTGTTGCTTGTGTCTAGGTTAATGTTGGTAGAGTTGTCCTTCGGTATGACACTTGTACCATTGATGTGA

Protein Analysis

457

Amino Acids

51.5

Weight (kDa)

7.64

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 304 - 412 1.1e-13 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AccII CGCG 2 cut(s) 369, 1254
AciI CCGC 4 cut(s) 360, 615, 627, 916
AclWI GGATC 4 cut(s) 901, 1151, 1164, 1259
AcoI YGGCCR 2 cut(s) 598, 645
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 1 cut(s) 687
AfaI GTAC 5 cut(s) 188, 208, 566, 1055, 1362
AfiI CCNNNNNNNGG 2 cut(s) 86, 110
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 9 cut(s) 76, 169, 240, 345, 519, 541, 841, 1034, 1228
AjnI CCWGG 4 cut(s) 85, 321, 501, 592
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 8 cut(s) 67, 276, 660, 730, 758, 809, 862, 922
AluI AGCT 8 cut(s) 67, 276, 660, 730, 758, 809, 862, 922
Alw26I GTCTC 3 cut(s) 435, 795, 1250
AlwI GGATC 4 cut(s) 901, 1151, 1164, 1259
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 5 cut(s) 223, 585, 598, 645, 1062
ApeKI GCWGC 2 cut(s) 679, 1097
ApoI RAATTY 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 1166
AspLEI GCGC 2 cut(s) 377, 614
AspS9I GGNCC 3 cut(s) 224, 585, 1081
AsuC2I CCSGG 2 cut(s) 222, 1294
AsuHPI GGTGA 3 cut(s) 101, 346, 1226
AvaI CYCGRG 1 cut(s) 639
AvaII GGWCC 1 cut(s) 1081
BaeI ACNNNNGTAYC 1 cut(s) 1344
BalI TGGCCA 1 cut(s) 647
BamHI GGATCC 1 cut(s) 1156
BanI GGYRCC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 666, 1109
BccI CCATC 3 cut(s) 125, 320, 953
BceAI ACGGC 2 cut(s) 585, 1126
BciT130I CCWGG 4 cut(s) 87, 323, 503, 594
BcnI CCSGG 2 cut(s) 222, 1294
BcoDI GTCTC 3 cut(s) 435, 795, 1250
BfaI CTAG 1 cut(s) 1320
BfmI CTRYAG 1 cut(s) 897
BfoI RGCGCY 1 cut(s) 615
BisI GCNGC 4 cut(s) 361, 615, 680, 1098
BlpI GCTNAGC 1 cut(s) 656
BlsI GCNGC 4 cut(s) 362, 616, 681, 1099
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 6 cut(s) 87, 222, 323, 503, 594, 1294
Bme18I GGWCC 1 cut(s) 1081
BmeT110I CYCGRG 1 cut(s) 639
BmgT120I GGNCC 3 cut(s) 224, 585, 1081
BmiI GGNNCC 4 cut(s) 115, 226, 578, 1158
BmrFI CCNGG 6 cut(s) 87, 222, 323, 503, 594, 1294
BmsI GCATC 2 cut(s) 727, 1084
Bpu1102I GCTNAGC 1 cut(s) 656
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 2 cut(s) 222, 1294
BsaJI CCNNGG 3 cut(s) 148, 592, 1065
BsaWI WCCGGW 1 cut(s) 1039
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 110
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 4 cut(s) 87, 323, 503, 594
BseDI CCNNGG 3 cut(s) 148, 592, 1065
BseGI GGATG 4 cut(s) 331, 347, 459, 775
BseLI CCNNNNNNNGG 2 cut(s) 86, 110
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 405, 647, 768
BseRI GAGGAG 1 cut(s) 1196
BseXI GCAGC 2 cut(s) 666, 1109
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 2 cut(s) 369, 1254
BshFI GGCC 5 cut(s) 225, 587, 600, 647, 1064
BshNI GGYRCC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 3 cut(s) 222, 1040, 1293
BslI CCNNNNNNNGG 2 cut(s) 86, 110
BsmAI GTCTC 3 cut(s) 435, 795, 1250
BsmBI CGTCTC 1 cut(s) 795
BsnI GGCC 5 cut(s) 225, 587, 600, 647, 1064
BsoBI CYCGRG 1 cut(s) 639
Bsp143I GATC 7 cut(s) 124, 631, 893, 1107, 1125, 1156, 1264
Bsp1720I GCTNAGC 1 cut(s) 656
Bsp68I TCGCGA 1 cut(s) 1254
BspACI CCGC 4 cut(s) 360, 615, 627, 916
BspANI GGCC 5 cut(s) 225, 587, 600, 647, 1064
BspCNI CTCAG 3 cut(s) 404, 648, 769
BspFNI CGCG 2 cut(s) 369, 1254
BspLI GGNNCC 4 cut(s) 115, 226, 578, 1158
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 4 cut(s) 901, 1151, 1164, 1259
BspT107I GGYRCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 148, 592, 1065
BssMI GATC 7 cut(s) 124, 631, 893, 1107, 1125, 1156, 1264
BssT1I CCWWGG 2 cut(s) 148, 1065
Bst2UI CCWGG 4 cut(s) 87, 323, 503, 594
Bst4CI ACNGT 4 cut(s) 199, 271, 1224, 1273
Bst6I CTCTTC 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 835, 920
BstDEI CTNAG 3 cut(s) 391, 656, 777
BstF5I GGATG 4 cut(s) 331, 347, 459, 775
BstFNI CGCG 2 cut(s) 369, 1254
BstH2I RGCGCY 1 cut(s) 615
BstHHI GCGC 2 cut(s) 377, 614
BstKTI GATC 7 cut(s) 127, 634, 896, 1110, 1128, 1159, 1267
BstMAI GTCTC 3 cut(s) 435, 795, 1250
BstMBI GATC 7 cut(s) 124, 631, 893, 1107, 1125, 1156, 1264
BstMWI GCNNNNNNNGC 2 cut(s) 366, 919
BstNI CCWGG 4 cut(s) 87, 323, 503, 594
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 6 cut(s) 85, 220, 321, 501, 592, 1292
BstSFI CTRYAG 1 cut(s) 897
BstUI CGCG 2 cut(s) 369, 1254
BstV1I GCAGC 2 cut(s) 666, 1109
BstX2I RGATCY 2 cut(s) 893, 1156
BstXI CCANNNNNNTGG 1 cut(s) 1009
BstYI RGATCY 2 cut(s) 893, 1156
BsuRI GGCC 5 cut(s) 225, 587, 600, 647, 1064
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 4 cut(s) 331, 347, 459, 775
BtsI GCAGTG 1 cut(s) 1292
BtsIMutI CAGTG 1 cut(s) 1292
BtuMI TCGCGA 1 cut(s) 1254
Cac8I GCNNGC 2 cut(s) 835, 920
CfoI GCGC 2 cut(s) 377, 614
Cfr13I GGNCC 3 cut(s) 224, 585, 1081
CseI GACGC 1 cut(s) 358
Csp6I GTAC 5 cut(s) 187, 207, 565, 1054, 1361
CviAII CATG 4 cut(s) 337, 856, 1091, 1150
CviQI GTAC 5 cut(s) 187, 207, 565, 1054, 1361
DdeI CTNAG 3 cut(s) 391, 656, 777
DpnI GATC 7 cut(s) 126, 633, 895, 1109, 1127, 1158, 1266
DpnII GATC 7 cut(s) 124, 631, 893, 1107, 1125, 1156, 1264
EaeI YGGCCR 2 cut(s) 598, 645
Eam1104I CTCTTC 1 cut(s) 473
EarI CTCTTC 1 cut(s) 473
Eco130I CCWWGG 2 cut(s) 148, 1065
Eco32I GATATC 1 cut(s) 1136
Eco47I GGWCC 1 cut(s) 1081
Eco57I CTGAAG 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 639
EcoRII CCWGG 4 cut(s) 85, 321, 501, 592
EcoRV GATATC 1 cut(s) 1136
EcoT14I CCWWGG 2 cut(s) 148, 1065
ErhI CCWWGG 2 cut(s) 148, 1065
Esp3I CGTCTC 1 cut(s) 795
FaeI CATG 4 cut(s) 340, 859, 1094, 1153
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FatI CATG 4 cut(s) 336, 855, 1090, 1149
Fnu4HI GCNGC 4 cut(s) 361, 615, 680, 1098
FokI GGATG 4 cut(s) 334, 338, 446, 782
Fsp4HI GCNGC 4 cut(s) 361, 615, 680, 1098
FspBI CTAG 1 cut(s) 1320
GlaI GCGC 2 cut(s) 376, 613
GluI GCNGC 4 cut(s) 361, 615, 680, 1098
HaeII RGCGCY 1 cut(s) 615
HaeIII GGCC 5 cut(s) 225, 587, 600, 647, 1064
HapII CCGG 3 cut(s) 222, 1040, 1293
HgaI GACGC 1 cut(s) 358
HhaI GCGC 2 cut(s) 377, 614
Hin1II CATG 4 cut(s) 340, 859, 1094, 1153
Hin6I GCGC 2 cut(s) 375, 612
HinP1I GCGC 2 cut(s) 375, 612
HindIII AAGCTT 3 cut(s) 65, 807, 860
HinfI GANTC 4 cut(s) 177, 749, 793, 1174
HpaII CCGG 3 cut(s) 222, 1040, 1293
HphI GGTGA 3 cut(s) 101, 346, 1226
Hpy188I TCNGA 7 cut(s) 182, 394, 487, 798, 926, 1133, 1161
Hpy188III TCNNGA 5 cut(s) 383, 1111, 1171, 1178, 1253
HpyCH4III ACNGT 4 cut(s) 199, 271, 1224, 1273
HpyCH4IV ACGT 1 cut(s) 686
HpyCH4V TGCA 6 cut(s) 257, 624, 682, 899, 913, 1097
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 919
HpyF3I CTNAG 3 cut(s) 391, 656, 777
HpySE526I ACGT 1 cut(s) 686
Hsp92II CATG 4 cut(s) 340, 859, 1094, 1153
HspAI GCGC 2 cut(s) 375, 612
Kzo9I GATC 7 cut(s) 124, 631, 893, 1107, 1125, 1156, 1264
LmnI GCTCC 1 cut(s) 927
Lsp1109I GCAGC 2 cut(s) 666, 1109
LweI GCATC 2 cut(s) 727, 1084
MaeI CTAG 1 cut(s) 1320
MaeII ACGT 1 cut(s) 686
MaeIII GTNAC 4 cut(s) 89, 128, 812, 967
MalI GATC 7 cut(s) 126, 633, 895, 1109, 1127, 1158, 1266
MboI GATC 7 cut(s) 124, 631, 893, 1107, 1125, 1156, 1264
MflI RGATCY 2 cut(s) 893, 1156
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 3 cut(s) 81, 513, 522
MluNI TGGCCA 1 cut(s) 647
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 4 cut(s) 510, 871, 963, 1292
Mox20I TGGCCA 1 cut(s) 647
MroXI GAANNNNTTC 1 cut(s) 1166
MscI TGGCCA 1 cut(s) 647
MseI TTAA 3 cut(s) 878, 948, 1325
MslI CAYNNNNRTG 4 cut(s) 335, 641, 1089, 1369
Msp20I TGGCCA 1 cut(s) 647
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 3 cut(s) 222, 1040, 1293
MspR9I CCNGG 6 cut(s) 87, 222, 323, 503, 594, 1294
MvaI CCWGG 4 cut(s) 87, 323, 503, 594
MvnI CGCG 2 cut(s) 369, 1254
MwoI GCNNNNNNNGC 2 cut(s) 366, 919
NciI CCSGG 2 cut(s) 222, 1294
NdeII GATC 7 cut(s) 124, 631, 893, 1107, 1125, 1156, 1264
NlaIII CATG 4 cut(s) 340, 859, 1094, 1153
NlaIV GGNNCC 4 cut(s) 115, 226, 578, 1158
NmeAIII GCCGAG 1 cut(s) 956
NmuCI GTSAC 2 cut(s) 89, 812
NruI TCGCGA 1 cut(s) 1254
NspI RCATGY 1 cut(s) 340
OliI CACNNNNGTG 1 cut(s) 641
PdmI GAANNNNTTC 1 cut(s) 1166
PfeI GAWTC 3 cut(s) 177, 793, 1174
PflFI GACNNNGTC 1 cut(s) 1003
PfoI TCCNGGA 1 cut(s) 321
PkrI GCNGC 4 cut(s) 362, 616, 681, 1099
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
Psp6I CCWGG 4 cut(s) 85, 321, 501, 592
PspGI CCWGG 4 cut(s) 85, 321, 501, 592
PspN4I GGNNCC 4 cut(s) 115, 226, 578, 1158
PspPI GGNCC 3 cut(s) 224, 585, 1081
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 893, 1156
PsyI GACNNNGTC 1 cut(s) 1003
RruI TCGCGA 1 cut(s) 1254
RsaI GTAC 5 cut(s) 188, 208, 566, 1055, 1362
RsaNI GTAC 5 cut(s) 187, 207, 565, 1054, 1361
RseI CAYNNNNRTG 4 cut(s) 335, 641, 1089, 1369
SaqAI TTAA 3 cut(s) 878, 948, 1325
SatI GCNGC 4 cut(s) 361, 615, 680, 1098
Sau3AI GATC 7 cut(s) 124, 631, 893, 1107, 1125, 1156, 1264
Sau96I GGNCC 3 cut(s) 224, 585, 1081
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 6 cut(s) 87, 222, 323, 503, 594, 1294
SfaNI GCATC 2 cut(s) 727, 1084
SfcI CTRYAG 1 cut(s) 897
SinI GGWCC 1 cut(s) 1081
SmiMI CAYNNNNRTG 4 cut(s) 335, 641, 1089, 1369
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 3 cut(s) 81, 513, 522
SsiI CCGC 4 cut(s) 360, 615, 627, 916
SspMI CTAG 1 cut(s) 1320
StyD4I CCNGG 6 cut(s) 85, 220, 321, 501, 592, 1292
StyI CCWWGG 2 cut(s) 148, 1065
TaaI ACNGT 4 cut(s) 199, 271, 1224, 1273
TaiI ACGT 1 cut(s) 689
TaqI TCGA 7 cut(s) 264, 291, 306, 384, 548, 716, 1170
TasI AATT 3 cut(s) 81, 513, 522
TatI WGTACW 2 cut(s) 186, 564
TauI GCSGC 2 cut(s) 363, 617
TfiI GAWTC 3 cut(s) 177, 793, 1174
Tru1I TTAA 3 cut(s) 878, 948, 1325
Tru9I TTAA 3 cut(s) 878, 948, 1325
TscAI CASTG 1 cut(s) 1292
TseFI GTSAC 2 cut(s) 89, 812
TseI GCWGC 2 cut(s) 679, 1097
Tsp45I GTSAC 2 cut(s) 89, 812
TspDTI ATGAA 7 cut(s) 220, 448, 559, 690, 872, 945, 1166
TspRI CASTG 1 cut(s) 1292
Tth111I GACNNNGTC 1 cut(s) 1003
VpaK11BI GGWCC 1 cut(s) 1081
XapI RAATTY 1 cut(s) 513
XceI RCATGY 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 1072
XmnI GAANNNNTTC 1 cut(s) 1166
XspI CTAG 1 cut(s) 1320
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.