Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000777

Physical Location & Seq

Genomic Coordinates Reverse (-)

53567324 .. 53568226

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCCTTCCACATCCTTCACCGGCGGTTATCGCATCTGCGCCTATCTCGACCCCTCAGAACCGAACCACGCTTCTCTCAAGCGCTTCTTCTTGTCTCTACTCGCCAGTCGCCACCACAAGTTCATCCCACTCTTCCAAAACTACTTGTCCGACCTATTTCTCAACCTGGAAACTGAAATTTCAAAAATTGGCAAAGCAAACTTCAACACCCCGAGCGACGACATGTCCTTTAAGTTCGTTTTCTCGCTGTTCTACGGGTCAGAAAGTACTTCATTGGGTTCCAAAGGGCCGAACCTGGTGGCCATATGGCTAGCGCCGCAACTTGCACCGCAGATCACACTCGGGTTGCCCAAGTTGCTGAGCTTTGCTAAAGATTTCTTGCTGCACACGTTTTCCTACCCTGCATTTTTGGTCAAATCGACCTATAAGAAGCTCTACGATGCGTTTTACGAGTCGTCGGCTTCGGTTTTGGATGAGGCCGAGAATAGTTTCGGGATTCAGAGAGACGAAGCTTGCCACAACCTTTTGTTTTTGGCTTGCTTCAATGCTTTTGGTGGCATGAAGATTTTGGCCGTTGTTAAGGAAAATGATGGAAATGTTACTTTCTCGGCGTTGGATAAGATGACTTTGACCAAGTTCGTGGTTTATGAGGCTTTGAGGATTGAACCTCCGGTTCCATTCCAGTACGGGAAGGCCAATGAGGATTTGGTGGTCCATAGCCATGATGCAGCATTTGAGATCAAGAAAGGGGAACATGATCTTCGGATATCAGTCGTTCGCCACGAAGGATCCGAAGATTTTCGAGAATCCGGAGGAGTTTGTGGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

277

Amino Acids

30.78

Weight (kDa)

5.99

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07410 FvH4_2g07421 FvH4_2g07423 FvH4_5g16260
malus_domestica	MD10G1085800.v1.1
prunus_persica	Prupe.8G110100_v2.0.a1
pyrus_communis	pycom10g03730 pycom10g06740
rosa_chinensis	RchiOBHm_Chr6g0260901 RchiOBHm_Chr6g0260921 RchiOBHm_Chr6g0260931 RchiOBHm_Chr6g0260961 RchiOBHm_Chr6g0261011
rosa_laevigata	RLG00000014467 RLG00000014470 RLG00000014471 RLG00000014473 RLG00000014475 RLG00000014476 RLG00000014477 RLG00000014478 RLG00000018641 RLG00000022453
rosa_multiflora	Rmu_sc0003025.1_g000005 Rmu_sc0003337.1_g000004 Rmu_sc0003337.1_g000028 Rmu_sc0005816.1_g000002 Rmu_sc0005816.1_g000003 Rmu_sc0005816.1_g000011 Rmu_sc0005816.1_g000029 Rmu_sc0005980.1_g000002 Rmu_sc0009186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00122160 Rroxscaffold_7G00207490 Rroxscaffold_7G00207500 Rroxscaffold_7G00207550 Rroxscaffold_7G00207560 Rroxscaffold_7G00207620
rosa_rugosa	Rorug02G0235500.1 Rorug05G0593300 Rorug05G0593300 Rorug05G0593400 Rorug05G0593500.1 Rorug05G0594400
rosa_samantha	Rh6AG112800 Rh6AG113000 Rh6AG113100 Rh6AG113300 Rh6AG113900 Rh6BG106900 Rh6BG107000 Rh6BG107200 Rh6BG107500 Rh6CG103900 Rh6CG104000 Rh6CG104300 Rh6CG104400 Rh6CG104600 Rh6DG094800 Rh6DG094900 Rh6DG095100 Rh6DG095200 Rh6DG095400
rosa_wichuraiana	Rw0G011910 Rw6G009600 Rw6G009610 Rw6G009620 Rw6G009630 Rw6G009670 Rw6G009710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	809
AciI	CCGC	3 cut(s)	24, 317, 329
AclWI	GGATC	2 cut(s)	783, 796
AcoI	YGGCCR	2 cut(s)	300, 570
AcsI	RAATTY	1 cut(s)	177
AfaI	GTAC	2 cut(s)	268, 686
AfeI	AGCGCT	1 cut(s)	83
AflIII	ACRYGT	2 cut(s)	222, 387
AgsI	TTSAA	4 cut(s)	183, 205, 544, 665
AhdI	GACNNNNNGTC	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	165, 294
AluBI	AGCT	3 cut(s)	363, 433, 512
AluI	AGCT	3 cut(s)	363, 433, 512
Alw26I	GTCTC	2 cut(s)	99, 498
AlwI	GGATC	2 cut(s)	783, 796
Ama87I	CYCGRG	2 cut(s)	211, 341
Aor13HI	TCCGGA	1 cut(s)	809
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	5 cut(s)	287, 300, 477, 570, 693
ApeKI	GCWGC	2 cut(s)	382, 728
ApoI	RAATTY	1 cut(s)	177
Asp700I	GAANNNNTTC	2 cut(s)	488, 798
AspLEI	GCGC	3 cut(s)	41, 84, 316
AspS9I	GGNCC	2 cut(s)	287, 712
AsuHPI	GGTGA	1 cut(s)	10
AsuNHI	GCTAGC	1 cut(s)	310
AvaI	CYCGRG	2 cut(s)	211, 341
AvaII	GGWCC	1 cut(s)	712
BalI	TGGCCA	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	788
BbvI	GCAGC	2 cut(s)	369, 740
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	1 cut(s)	557
BciT130I	CCWGG	2 cut(s)	167, 296
BcoDI	GTCTC	2 cut(s)	99, 498
BfaI	CTAG	1 cut(s)	311
BfoI	RGCGCY	2 cut(s)	85, 317
BisI	GCNGC	3 cut(s)	317, 383, 729
BlpI	GCTNAGC	1 cut(s)	359
BlsI	GCNGC	3 cut(s)	318, 384, 730
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	167, 296
Bme18I	GGWCC	1 cut(s)	712
BmeRI	GACNNNNNGTC	1 cut(s)	223
BmeT110I	CYCGRG	2 cut(s)	211, 341
BmgT120I	GGNCC	2 cut(s)	287, 712
BmiI	GGNNCC	3 cut(s)	280, 675, 790
BmrFI	CCNGG	2 cut(s)	167, 296
BmsI	GCATC	3 cut(s)	42, 430, 715
BmtI	GCTAGC	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	62
BsaWI	WCCGGW	2 cut(s)	670, 809
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	105, 682
BseAI	TCCGGA	1 cut(s)	809
BseBI	CCWGG	2 cut(s)	167, 296
BseGI	GGATG	3 cut(s)	11, 123, 478
BseMII	CTCAG	2 cut(s)	69, 350
BseNI	ACTGG	2 cut(s)	105, 682
BseRI	GAGGAG	1 cut(s)	828
BseXI	GCAGC	2 cut(s)	369, 740
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	5 cut(s)	289, 302, 479, 572, 695
BsiHKCI	CYCGRG	2 cut(s)	211, 341
BsiSI	CCGG	3 cut(s)	21, 671, 810
BsmAI	GTCTC	2 cut(s)	99, 498
BsmBI	CGTCTC	1 cut(s)	498
BsnI	GGCC	5 cut(s)	289, 302, 479, 572, 695
BsoBI	CYCGRG	2 cut(s)	211, 341
Bsp13I	TCCGGA	1 cut(s)	809
Bsp143I	GATC	4 cut(s)	333, 738, 757, 788
Bsp1720I	GCTNAGC	1 cut(s)	359
BspACI	CCGC	3 cut(s)	24, 317, 329
BspANI	GGCC	5 cut(s)	289, 302, 479, 572, 695
BspCNI	CTCAG	2 cut(s)	68, 351
BspEI	TCCGGA	1 cut(s)	809
BspLI	GGNNCC	3 cut(s)	280, 675, 790
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	783, 796
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	105, 682
BssAI	RCCGGY	1 cut(s)	20
BssMI	GATC	4 cut(s)	333, 738, 757, 788
Bst2UI	CCWGG	2 cut(s)	167, 296
Bst6I	CTCTTC	1 cut(s)	137
BstC8I	GCNNGC	3 cut(s)	312, 514, 538
BstDEI	CTNAG	2 cut(s)	55, 359
BstF5I	GGATG	3 cut(s)	11, 123, 478
BstH2I	RGCGCY	2 cut(s)	85, 317
BstHHI	GCGC	3 cut(s)	41, 84, 316
BstKTI	GATC	4 cut(s)	336, 741, 760, 791
BstMAI	GTCTC	2 cut(s)	99, 498
BstMBI	GATC	4 cut(s)	333, 738, 757, 788
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 316, 355
BstNI	CCWGG	2 cut(s)	167, 296
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	165, 294
BstV1I	GCAGC	2 cut(s)	369, 740
BstX2I	RGATCY	1 cut(s)	788
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	788
BsuRI	GGCC	5 cut(s)	289, 302, 479, 572, 695
BtsCI	GGATG	3 cut(s)	11, 123, 478
Cac8I	GCNNGC	3 cut(s)	312, 514, 538
CfoI	GCGC	3 cut(s)	41, 84, 316
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	287, 712
CsiI	ACCWGGT	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	267, 685
CviAII	CATG	4 cut(s)	223, 559, 722, 755
CviQI	GTAC	2 cut(s)	267, 685
DdeI	CTNAG	2 cut(s)	55, 359
DpnI	GATC	4 cut(s)	335, 740, 759, 790
DpnII	GATC	4 cut(s)	333, 738, 757, 788
DriI	GACNNNNNGTC	1 cut(s)	223
EaeI	YGGCCR	2 cut(s)	300, 570
Eam1104I	CTCTTC	1 cut(s)	137
Eam1105I	GACNNNNNGTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	712
Eco47III	AGCGCT	1 cut(s)	83
Eco88I	CYCGRG	2 cut(s)	211, 341
EcoRII	CCWGG	2 cut(s)	165, 294
EcoRV	GATATC	1 cut(s)	768
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	4 cut(s)	226, 562, 725, 758
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FatI	CATG	4 cut(s)	222, 558, 721, 754
FauNDI	CATATG	1 cut(s)	305
Fnu4HI	GCNGC	3 cut(s)	317, 383, 729
FokI	GGATG	2 cut(s)	110, 485
Fsp4HI	GCNGC	3 cut(s)	317, 383, 729
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	3 cut(s)	40, 83, 315
GluI	GCNGC	3 cut(s)	317, 383, 729
HaeII	RGCGCY	2 cut(s)	85, 317
HaeIII	GGCC	5 cut(s)	289, 302, 479, 572, 695
HapII	CCGG	3 cut(s)	21, 671, 810
HhaI	GCGC	3 cut(s)	41, 84, 316
Hin1II	CATG	4 cut(s)	226, 562, 725, 758
Hin6I	GCGC	3 cut(s)	39, 82, 314
HinP1I	GCGC	3 cut(s)	39, 82, 314
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	3 cut(s)	452, 496, 806
HpaII	CCGG	3 cut(s)	21, 671, 810
HphI	GGTGA	1 cut(s)	10
Hpy188I	TCNGA	6 cut(s)	58, 151, 262, 501, 765, 793
Hpy188III	TCNNGA	5 cut(s)	47, 493, 742, 803, 810
Hpy99I	CGWCG	2 cut(s)	221, 460
HpyAV	CCTTC	4 cut(s)	15, 25, 685, 779
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	326, 385, 404, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 316, 355
HpyF3I	CTNAG	2 cut(s)	55, 359
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	4 cut(s)	226, 562, 725, 758
HspAI	GCGC	3 cut(s)	39, 82, 314
Kpn2I	TCCGGA	1 cut(s)	809
Kzo9I	GATC	4 cut(s)	333, 738, 757, 788
Lsp1109I	GCAGC	2 cut(s)	369, 740
LweI	GCATC	3 cut(s)	42, 430, 715
MabI	ACCWGGT	1 cut(s)	294
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	4 cut(s)	335, 740, 759, 790
MboI	GATC	4 cut(s)	333, 738, 757, 788
MboII	GAAGA	5 cut(s)	79, 124, 574, 752, 806
MflI	RGATCY	1 cut(s)	788
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	2 cut(s)	177, 186
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	174, 594
MnlI	CCTC	7 cut(s)	64, 469, 643, 651, 678, 694, 806
Mox20I	TGGCCA	1 cut(s)	302
MroI	TCCGGA	1 cut(s)	809
MroXI	GAANNNNTTC	2 cut(s)	488, 798
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	2 cut(s)	231, 579
MslI	CAYNNNNRTG	1 cut(s)	720
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	3 cut(s)	21, 671, 810
MspR9I	CCNGG	2 cut(s)	167, 296
MvaI	CCWGG	2 cut(s)	167, 296
MwoI	GCNNNNNNNGC	3 cut(s)	30, 316, 355
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	4 cut(s)	333, 738, 757, 788
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	4 cut(s)	226, 562, 725, 758
NlaIV	GGNNCC	3 cut(s)	280, 675, 790
NmeAIII	GCCGAG	2 cut(s)	505, 587
NspI	RCATGY	1 cut(s)	226
PciI	ACATGT	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	2 cut(s)	780, 789
PdmI	GAANNNNTTC	2 cut(s)	488, 798
PfeI	GAWTC	2 cut(s)	496, 806
PkrI	GCNGC	3 cut(s)	318, 384, 730
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PscI	ACATGT	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	165, 294
PspGI	CCWGG	2 cut(s)	165, 294
PspN4I	GGNNCC	3 cut(s)	280, 675, 790
PspPI	GGNCC	2 cut(s)	287, 712
PsuI	RGATCY	1 cut(s)	788
RsaI	GTAC	2 cut(s)	268, 686
RsaNI	GTAC	2 cut(s)	267, 685
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	231, 579
SatI	GCNGC	3 cut(s)	317, 383, 729
Sau3AI	GATC	4 cut(s)	333, 738, 757, 788
Sau96I	GGNCC	2 cut(s)	287, 712
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	167, 296
SexAI	ACCWGGT	1 cut(s)	294
SfaNI	GCATC	3 cut(s)	42, 430, 715
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	177, 186
SsiI	CCGC	3 cut(s)	24, 317, 329
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	165, 294
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	3 cut(s)	48, 419, 802
TasI	AATT	2 cut(s)	177, 186
TatI	WGTACW	1 cut(s)	266
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	496, 806
Tru1I	TTAA	2 cut(s)	231, 579
Tru9I	TTAA	2 cut(s)	231, 579
TseI	GCWGC	2 cut(s)	382, 728
TspDTI	ATGAA	3 cut(s)	112, 261, 575
VpaK11BI	GGWCC	1 cut(s)	712
XapI	RAATTY	1 cut(s)	177
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XmnI	GAANNNNTTC	2 cut(s)	488, 798
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.