Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000777

Physical Location & Seq

Genomic Coordinates Forward (+)

57471379 .. 57472629

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGTCATCTTCATCTTCTTCTGCTGTTCCCAAACCACAACCAAAGCTTCCACTAAAACGGATCCCCGGTGACTATGGCGCACCCTTCTTTGGTGCCATCAAGGATCGGTACGATTTTTTCTACAACCAAGGTCGCGACCAGTTCTTTAAAGCCCGAATCCAAAAGTACAACTCCACTGTGTTCCGTACAAACATGCCTCCTGGTCCCTTCATTGCTTCAAACCCGAAGGTCGTGACTGTCCTGGATGCCATAAGCTTTCCGATTCTCTTTGACAACTCGAAAGTCGAAAAACGTGACATCTTCGATGGCACTTACATGCCATCGACAGACTTCACCGGTGGCTATCGCATTTGCTCATTTCTTGACCCATCCGAAGCTAAACACACTTCTCTAAAAAATTTCTTCTTGTCTCTACTCTCAGCTAACCACAAGAATGTCATACCACTTTTCCATACCCACTTCACCGACCTATTTGTCAAAGCCGAGGCTCAGTTGTTAAAAGATGGAAAATCAGACTTTAACACACTGAATGACAAAACTTCCTTCGACTTCATCTTTGAGCTGTTTTTTGGGAAAAACCCATCGGACACAACTCTGGGGTCAAAAGGATCAACCTTGGTTACCCTTTGGCTCTTACCCCAACTTTCTCCTCAGCTCACACTAGGGTTGCCCAAGTTGTTCAATGTTTTCGAAGATTTCTTGCTTCACACGTTTCCCTTCCCTGCCCTTTTTGTTAAACCGGCTTATAACAAGGTATACAAGGCCTTTTACCAGTCTGCAGCTAAGGCCTTGGACGAAGCTGAGAGTAATTTCGGGATTTCAAGAGACGAAGCATGCCACAACCTAGTGTTCTTGGTGTGCTTCAATGCTTATGGTGGCATGAAGCTTTTGTTCCCTTCCTTGTTGAAATGGGTCGGATTAGCAGGAGAGGATTTACACGGCAAGCTCCGTGATGAAATCAGGGCAGTTGTTAAAGAAGCTGGAGGTAAGATTACTCTTGCAGCTTTGGATAAGATGACACTAACCAAGTCAGTTGTTTATGAGGCCTTGAGGATTGATCCTTCCGTCCCATTCCAATACGGAAAGGCCAAGGAAGATCTAATAATCGAGAGCCATGACGCAGCATTTGAGATAAAAAAGGGAGAAATAATCTTCGGGTACCAGACCATTGCAACTAGGGATGGAAAAATTTTCAAGAACCCCGAGGAGTTTGTAGGTGACAGGTTTGTGGGGAGGGCGAGAAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

416

Amino Acids

46.73

Weight (kDa)

8.91

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	314 - 410	1e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07410 FvH4_2g07421 FvH4_2g07423 FvH4_5g16260
malus_domestica	MD10G1085800.v1.1
prunus_persica	Prupe.8G110100_v2.0.a1
pyrus_communis	pycom10g03730 pycom10g06740
rosa_chinensis	RchiOBHm_Chr6g0260901 RchiOBHm_Chr6g0260921 RchiOBHm_Chr6g0260931 RchiOBHm_Chr6g0260961 RchiOBHm_Chr6g0261011
rosa_laevigata	RLG00000014467 RLG00000014470 RLG00000014471 RLG00000014473 RLG00000014475 RLG00000014476 RLG00000014477 RLG00000014478 RLG00000018641 RLG00000022453
rosa_multiflora	Rmu_sc0003025.1_g000005 Rmu_sc0003337.1_g000004 Rmu_sc0003337.1_g000028 Rmu_sc0005816.1_g000002 Rmu_sc0005816.1_g000003 Rmu_sc0005816.1_g000011 Rmu_sc0005816.1_g000029 Rmu_sc0005980.1_g000002 Rmu_sc0009186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00122160 Rroxscaffold_7G00207490 Rroxscaffold_7G00207500 Rroxscaffold_7G00207550 Rroxscaffold_7G00207560 Rroxscaffold_7G00207620
rosa_rugosa	Rorug02G0235500.1 Rorug05G0593300 Rorug05G0593300 Rorug05G0593400 Rorug05G0593500.1 Rorug05G0594400
rosa_samantha	Rh6AG112800 Rh6AG113000 Rh6AG113100 Rh6AG113300 Rh6AG113900 Rh6BG106900 Rh6BG107000 Rh6BG107200 Rh6BG107500 Rh6CG103900 Rh6CG104000 Rh6CG104300 Rh6CG104400 Rh6CG104600 Rh6DG094800 Rh6DG094900 Rh6DG095100 Rh6DG095200 Rh6DG095400
rosa_wichuraiana	Rw0G011910 Rw6G009600 Rw6G009610 Rw6G009620 Rw6G009630 Rw6G009670 Rw6G009710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	747
AasI	GACNNNNNNGTC	1 cut(s)	473
Acc65I	GGTACC	1 cut(s)	1158
AccB1I	GGYRCC	2 cut(s)	92, 1158
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	1 cut(s)	135
AclWI	GGATC	5 cut(s)	55, 68, 111, 616, 1052
AcsI	RAATTY	2 cut(s)	397, 1188
AfaI	GTAC	4 cut(s)	110, 167, 187, 1160
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	708
AgeI	ACCGGT	1 cut(s)	335
AgsI	TTSAA	6 cut(s)	219, 682, 822, 865, 907, 1195
AjnI	CCWGG	2 cut(s)	199, 240
Alw26I	GTCTC	2 cut(s)	414, 819
AlwI	GGATC	5 cut(s)	55, 68, 111, 616, 1052
Ama87I	CYCGRG	1 cut(s)	1202
AoxI	GGCC	4 cut(s)	762, 786, 1044, 1086
ApeKI	GCWGC	3 cut(s)	779, 1001, 1121
ApoI	RAATTY	2 cut(s)	397, 1188
ArsI	GACNNNNNNTTYG	4 cut(s)	539, 571, 1109, 1141
AsiGI	ACCGGT	1 cut(s)	335
Asp718I	GGTACC	1 cut(s)	1158
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	4 cut(s)	80, 325, 454, 1229
AsuII	TTCGAA	1 cut(s)	690
AvaI	CYCGRG	1 cut(s)	1202
AvaII	GGWCC	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	60
BanI	GGYRCC	2 cut(s)	92, 1158
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	3 cut(s)	791, 1013, 1133
BccI	CCATC	7 cut(s)	104, 299, 328, 376, 497, 589, 1175
BceAI	ACGGC	1 cut(s)	955
BciT130I	CCWGG	2 cut(s)	201, 242
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	414, 819
BfaI	CTAG	3 cut(s)	662, 845, 1176
BfmI	CTRYAG	1 cut(s)	777
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	3 cut(s)	780, 1002, 1122
BlsI	GCNGC	3 cut(s)	781, 1003, 1123
Bme1390I	CCNGG	3 cut(s)	66, 201, 242
Bme18I	GGWCC	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	1202
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	4 cut(s)	62, 94, 205, 1160
BmrFI	CCNGG	3 cut(s)	66, 201, 242
BmsI	GCATC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	1002
Bpu10I	CCTNAGC	2 cut(s)	651, 783
Bpu14I	TTCGAA	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	1069
BpuMI	CCSGG	1 cut(s)	66
BsaJI	CCNNGG	7 cut(s)	64, 127, 483, 615, 789, 1089, 1203
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	2 cut(s)	335, 739
Bse1I	ACTGG	2 cut(s)	139, 772
Bse3DI	GCAATG	2 cut(s)	210, 1167
BseBI	CCWGG	2 cut(s)	201, 242
BseDI	CCNNGG	7 cut(s)	64, 127, 483, 615, 789, 1089, 1203
BseGI	GGATG	3 cut(s)	250, 368, 1186
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	2 cut(s)	210, 1167
BseMII	CTCAG	4 cut(s)	432, 503, 665, 792
BseNI	ACTGG	2 cut(s)	139, 772
BseRI	GAGGAG	2 cut(s)	639, 1220
BseXI	GCAGC	3 cut(s)	791, 1013, 1133
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	764, 788, 1046, 1088
BshNI	GGYRCC	2 cut(s)	92, 1158
BshTI	ACCGGT	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	1202
BsiSI	CCGG	3 cut(s)	66, 336, 740
BslFI	GGGAC	2 cut(s)	189, 1052
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	414, 819
BsmBI	CGTCTC	1 cut(s)	819
BsmFI	GGGAC	2 cut(s)	189, 1052
BsnI	GGCC	4 cut(s)	764, 788, 1046, 1088
BsoBI	CYCGRG	1 cut(s)	1202
Bsp119I	TTCGAA	1 cut(s)	690
Bsp143I	GATC	5 cut(s)	60, 103, 608, 1057, 1096
Bsp68I	TCGCGA	1 cut(s)	135
BspANI	GGCC	4 cut(s)	764, 788, 1046, 1088
BspCNI	CTCAG	4 cut(s)	431, 502, 664, 793
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	4 cut(s)	62, 94, 205, 1160
BspMAI	CTGCAG	1 cut(s)	781
BspPI	GGATC	5 cut(s)	55, 68, 111, 616, 1052
BspT104I	TTCGAA	1 cut(s)	690
BspT107I	GGYRCC	2 cut(s)	92, 1158
BsrDI	GCAATG	2 cut(s)	210, 1167
BsrFI	RCCGGY	2 cut(s)	335, 739
BsrI	ACTGG	2 cut(s)	139, 772
BssAI	RCCGGY	2 cut(s)	335, 739
BssECI	CCNNGG	7 cut(s)	64, 127, 483, 615, 789, 1089, 1203
BssMI	GATC	5 cut(s)	60, 103, 608, 1057, 1096
BssNAI	GTATAC	1 cut(s)	757
BssT1I	CCWWGG	4 cut(s)	127, 615, 789, 1089
Bst1107I	GTATAC	1 cut(s)	757
Bst2UI	CCWGG	2 cut(s)	201, 242
Bst4CI	ACNGT	2 cut(s)	178, 238
BstBI	TTCGAA	1 cut(s)	690
BstC8I	GCNNGC	2 cut(s)	835, 944
BstDEI	CTNAG	5 cut(s)	418, 489, 651, 783, 801
BstEII	GGTNACC	1 cut(s)	619
BstF5I	GGATG	3 cut(s)	250, 368, 1186
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	5 cut(s)	63, 106, 611, 1060, 1099
BstMAI	GTCTC	2 cut(s)	414, 819
BstMBI	GATC	5 cut(s)	60, 103, 608, 1057, 1096
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstNI	CCWGG	2 cut(s)	201, 242
BstNSI	RCATGY	3 cut(s)	196, 319, 837
BstPI	GGTNACC	1 cut(s)	619
BstSCI	CCNGG	3 cut(s)	64, 199, 240
BstSFI	CTRYAG	1 cut(s)	777
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	791, 1013, 1133
BstX2I	RGATCY	2 cut(s)	60, 1096
BstYI	RGATCY	2 cut(s)	60, 1096
BstZ17I	GTATAC	1 cut(s)	757
BsuRI	GGCC	4 cut(s)	764, 788, 1046, 1088
BtsCI	GGATG	3 cut(s)	250, 368, 1186
BtsIMutI	CAGTG	2 cut(s)	174, 524
BtuMI	TCGCGA	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	835, 944
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	2 cut(s)	335, 739
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	1127
Csp6I	GTAC	4 cut(s)	109, 166, 186, 1159
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	5 cut(s)	193, 316, 834, 880, 1115
CviQI	GTAC	4 cut(s)	109, 166, 186, 1159
DdeI	CTNAG	5 cut(s)	418, 489, 651, 783, 801
DpnI	GATC	5 cut(s)	62, 105, 610, 1059, 1098
DpnII	GATC	5 cut(s)	60, 103, 608, 1057, 1096
DraI	TTTAAA	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
Eco130I	CCWWGG	4 cut(s)	127, 615, 789, 1089
Eco147I	AGGCCT	3 cut(s)	764, 788, 1046
Eco47I	GGWCC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	1202
Eco91I	GGTNACC	1 cut(s)	619
EcoO65I	GGTNACC	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	199, 240
EcoT14I	CCWWGG	4 cut(s)	127, 615, 789, 1089
ErhI	CCWWGG	4 cut(s)	127, 615, 789, 1089
Esp3I	CGTCTC	1 cut(s)	819
FaeI	CATG	5 cut(s)	196, 319, 837, 883, 1118
FaqI	GGGAC	2 cut(s)	189, 1052
FatI	CATG	5 cut(s)	192, 315, 833, 879, 1114
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	3 cut(s)	780, 1002, 1122
FokI	GGATG	3 cut(s)	257, 355, 1193
Fsp4HI	GCNGC	3 cut(s)	780, 1002, 1122
FspBI	CTAG	3 cut(s)	662, 845, 1176
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	780, 1002, 1122
GsuI	CTGGAG	1 cut(s)	1002
HaeIII	GGCC	4 cut(s)	764, 788, 1046, 1088
HapII	CCGG	3 cut(s)	66, 336, 740
HgaI	GACGC	1 cut(s)	1127
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	196, 319, 837, 883, 1118
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	4 cut(s)	44, 253, 884, 1243
HinfI	GANTC	2 cut(s)	156, 262
HpaII	CCGG	3 cut(s)	66, 336, 740
HphI	GGTGA	4 cut(s)	80, 325, 454, 1229
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	6 cut(s)	261, 373, 514, 586, 917, 1250
Hpy188III	TCNNGA	7 cut(s)	134, 232, 362, 814, 822, 1108, 1195
Hpy8I	GTNNAC	1 cut(s)	757
HpyAV	CCTTC	7 cut(s)	94, 217, 220, 553, 727, 906, 1071
HpyCH4III	ACNGT	2 cut(s)	178, 238
HpyCH4IV	ACGT	2 cut(s)	292, 710
HpyCH4V	TGCA	3 cut(s)	779, 1001, 1172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	5 cut(s)	418, 489, 651, 783, 801
HpySE526I	ACGT	2 cut(s)	292, 710
Hsp92II	CATG	5 cut(s)	196, 319, 837, 883, 1118
HspAI	GCGC	1 cut(s)	78
KpnI	GGTACC	1 cut(s)	1162
Kzo9I	GATC	5 cut(s)	60, 103, 608, 1057, 1096
LmnI	GCTCC	1 cut(s)	951
Lsp1109I	GCAGC	3 cut(s)	791, 1013, 1133
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	3 cut(s)	662, 845, 1176
MaeII	ACGT	2 cut(s)	292, 710
MaeIII	GTNAC	5 cut(s)	68, 232, 293, 619, 1217
MalI	GATC	5 cut(s)	62, 105, 610, 1059, 1098
MboI	GATC	5 cut(s)	60, 103, 608, 1057, 1096
MboII	GAAGA	7 cut(s)	6, 9, 292, 394, 704, 1106, 1144
MflI	RGATCY	2 cut(s)	60, 1096
MluCI	AATT	3 cut(s)	397, 808, 1188
MmeI	TCCRAC	1 cut(s)	895
MnlI	CCTC	9 cut(s)	207, 478, 660, 922, 977, 1036, 1044, 1198, 1227
MseI	TTAA	5 cut(s)	147, 497, 519, 735, 972
MslI	CAYNNNNRTG	2 cut(s)	314, 432
MspI	CCGG	3 cut(s)	66, 336, 740
MspR9I	CCNGG	3 cut(s)	66, 201, 242
MvaI	CCWGG	2 cut(s)	201, 242
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	785
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	5 cut(s)	60, 103, 608, 1057, 1096
NlaIII	CATG	5 cut(s)	196, 319, 837, 883, 1118
NlaIV	GGNNCC	4 cut(s)	62, 94, 205, 1160
NmeAIII	GCCGAG	1 cut(s)	508
NmuCI	GTSAC	4 cut(s)	68, 232, 293, 1217
NruI	TCGCGA	1 cut(s)	135
NspI	RCATGY	3 cut(s)	196, 319, 837
NspV	TTCGAA	1 cut(s)	690
PaeI	GCATGC	1 cut(s)	837
PceI	AGGCCT	3 cut(s)	764, 788, 1046
PfeI	GAWTC	2 cut(s)	156, 262
PfoI	TCCNGGA	1 cut(s)	240
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	781, 1003, 1123
PsiI	TTATAA	1 cut(s)	747
Psp6I	CCWGG	2 cut(s)	199, 240
PspEI	GGTNACC	1 cut(s)	619
PspGI	CCWGG	2 cut(s)	199, 240
PspN4I	GGNNCC	4 cut(s)	62, 94, 205, 1160
PspPI	GGNCC	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	60, 1096
RruI	TCGCGA	1 cut(s)	135
RsaI	GTAC	4 cut(s)	110, 167, 187, 1160
RsaNI	GTAC	4 cut(s)	109, 166, 186, 1159
RseI	CAYNNNNRTG	2 cut(s)	314, 432
SaqAI	TTAA	5 cut(s)	147, 497, 519, 735, 972
SatI	GCNGC	3 cut(s)	780, 1002, 1122
Sau3AI	GATC	5 cut(s)	60, 103, 608, 1057, 1096
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	3 cut(s)	66, 201, 242
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	777
SfuI	TTCGAA	1 cut(s)	690
SgrAI	CRCCGGYG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	314, 432
SmlI	CTYRAG	1 cut(s)	1048
SmoI	CTYRAG	1 cut(s)	1048
SphI	GCATGC	1 cut(s)	837
Sse9I	AATT	3 cut(s)	397, 808, 1188
SseBI	AGGCCT	3 cut(s)	764, 788, 1046
SspMI	CTAG	3 cut(s)	662, 845, 1176
StuI	AGGCCT	3 cut(s)	764, 788, 1046
StyD4I	CCNGG	3 cut(s)	64, 199, 240
StyI	CCWWGG	4 cut(s)	127, 615, 789, 1089
TaaI	ACNGT	2 cut(s)	178, 238
TaiI	ACGT	2 cut(s)	295, 713
TaqI	TCGA	7 cut(s)	278, 285, 303, 323, 546, 690, 1107
TasI	AATT	3 cut(s)	397, 808, 1188
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	156, 262
Tru1I	TTAA	5 cut(s)	147, 497, 519, 735, 972
Tru9I	TTAA	5 cut(s)	147, 497, 519, 735, 972
TscAI	CASTG	2 cut(s)	181, 531
TseFI	GTSAC	4 cut(s)	68, 232, 293, 1217
TseI	GCWGC	3 cut(s)	779, 1001, 1121
Tsp45I	GTSAC	4 cut(s)	68, 232, 293, 1217
TspDTI	ATGAA	4 cut(s)	199, 541, 896, 969
TspGWI	ACGGA	5 cut(s)	73, 173, 938, 1054, 1095
TspRI	CASTG	2 cut(s)	181, 531
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	397, 1188
XceI	RCATGY	3 cut(s)	196, 319, 837
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	3 cut(s)	662, 845, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.